mRNA_P-littoralis_Contig1301.8.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1301.8.1
Unique NamemRNA_P-littoralis_Contig1301.8.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1301.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1301contigP-littoralis_Contig1301:30213..30648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size436
Hectar predicted targeting categoryother localisation
Exons1
Cds size330
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.1518314-UTR-P-littoralis_Contig1301:30212..303051680789594.1518314-UTR-P-littoralis_Contig1301:30212..30305Pylaiella littoralis U1_48UTRP-littoralis_Contig1301 30213..30305 -
1680789594.1744816-UTR-P-littoralis_Contig1301:30635..306481680789594.1744816-UTR-P-littoralis_Contig1301:30635..30648Pylaiella littoralis U1_48UTRP-littoralis_Contig1301 30636..30648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.1617413-CDS-P-littoralis_Contig1301:30305..306351680789594.1617413-CDS-P-littoralis_Contig1301:30305..30635Pylaiella littoralis U1_48CDSP-littoralis_Contig1301 30306..30635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1301.8.1prot_P-littoralis_Contig1301.8.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1301 30306..30635 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1301.8.1

>prot_P-littoralis_Contig1301.8.1 ID=prot_P-littoralis_Contig1301.8.1|Name=mRNA_P-littoralis_Contig1301.8.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=110bp
MILANEMASLGGFGHWKNEVPDYGHKSVGYTRFWPFFLLSTSCCSILITR
KIKIGCFKTPCLENVVVSKGSSKIVVFFCNTNTHDDVSYDGLGGGVDVLA
FDFCFFHIL*
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mRNA from alignment at P-littoralis_Contig1301:30213..30648-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1301.8.1 ID=mRNA_P-littoralis_Contig1301.8.1|Name=mRNA_P-littoralis_Contig1301.8.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=436bp|location=Sequence derived from alignment at P-littoralis_Contig1301:30213..30648- (Pylaiella littoralis U1_48)
CGCCGTTTGATTTATGATTCTTGCCAATGAGATGGCGTCCTTGGGCGGTT
TCGGTCACTGGAAAAATGAGGTACCCGATTATGGCCACAAAAGCGTCGGG
TATACCCGTTTTTGGCCGTTCTTCTTATTGTCAACCAGCTGCTGTTCGAT
TTTGATCACACGCAAGATTAAGATTGGGTGCTTCAAAACGCCATGTTTGG
AAAATGTTGTTGTTTCGAAAGGCTCTTCAAAAATCGTCGTGTTTTTTTGC
AACACAAACACACACGATGACGTATCATATGATGGCCTCGGAGGTGGGGT
GGATGTTCTTGCCTTTGATTTTTGTTTCTTCCATATTCTCTGAGAAAAAA
AAATGACGGCACCAGCATCGCGACTTACATATCATGCAGGTAAATATATC
GATAGGTGAGGTTTCCTTCAACAGGCCAATGATTAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1301:30213..30648-

>mRNA_P-littoralis_Contig1301.8.1 ID=mRNA_P-littoralis_Contig1301.8.1|Name=mRNA_P-littoralis_Contig1301.8.1|organism=Pylaiella littoralis U1_48|type=CDS|length=330bp|location=Sequence derived from alignment at P-littoralis_Contig1301:30213..30648- (Pylaiella littoralis U1_48)
ATGATTCTTGCCAATGAGATGGCGTCCTTGGGCGGTTTCGGTCACTGGAA
AAATGAGGTACCCGATTATGGCCACAAAAGCGTCGGGTATACCCGTTTTT
GGCCGTTCTTCTTATTGTCAACCAGCTGCTGTTCGATTTTGATCACACGC
AAGATTAAGATTGGGTGCTTCAAAACGCCATGTTTGGAAAATGTTGTTGT
TTCGAAAGGCTCTTCAAAAATCGTCGTGTTTTTTTGCAACACAAACACAC
ACGATGACGTATCATATGATGGCCTCGGAGGTGGGGTGGATGTTCTTGCC
TTTGATTTTTGTTTCTTCCATATTCTCTGA
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