mRNA_P-littoralis_Contig1300.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1300.3.1
Unique NamemRNA_P-littoralis_Contig1300.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1300.3.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 219 bits (557), Expect = 1.430e-67
Identity = 113/153 (73.86%), Postives = 129/153 (84.31%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAFVSHKRSTQPIVSNSSAESEYIAAGEGLREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVMSVEHVRTEEQHADVLTKAPSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG  +SH   TQ IVS SS E+EYIAAGEG++EALFVR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPLSS RSKHIDVR+HFIR LFRSG +S++ V T EQHADVLTKA S+   +YHR+ LMNLPE
Sbjct:  230 YVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGEISIKFVSTSEQHADVLTKAHSKSSLQYHRRKLMNLPE 381
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BLAST of mRNA_P-littoralis_Contig1300.3.1 vs. uniprot
Match: A0A6H5KR64_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR64_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 1.130e-65
Identity = 101/152 (66.45%), Postives = 122/152 (80.26%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAFVSHKRSTQPIVSNSSAESEYIAAGEGLREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVMSVEHVRTEEQHADVLTKAPSRDLFRYHRKALMNLP 457
            +VD+SYAD   DRRS +G+A  VGG  V     TQP+ + S+ E+EYIAAGEG++EALFVR VLSFIAPETSG+TI+V EDNEGA+AL+QNP SS RSKHIDVRFHFIRELF++G ++ ++V TEEQHAD+LTK   R    YHRKALMNLP
Sbjct:   60 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNLP 211
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BLAST of mRNA_P-littoralis_Contig1300.3.1 vs. uniprot
Match: A0A6H5KGI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGI0_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 8.360e-65
Identity = 110/153 (71.90%), Postives = 129/153 (84.31%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAFVSHKRSTQPIVSNSSAESEYIAAGEGLREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVMSVEHVRTEEQHADVLTKAPSRDLFRYHRKALMNLPE 460
            YVDASYAD   D+RSV+G+AT VGG  VSH   TQ I+S SS E+EYIAAGEG++EALFVR VLSF+APETSGS+IKVLEDN+GA+AL+QNPLSSGR+KHIDVR+HFI  LFRSG +SV+ V T EQHAD+LTKA SR   +YHR+ LMNLPE
Sbjct:  235 YVDASYADTE-DKRSVTGMATTVGGTVVSHGSKTQSILSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIHGLFRSGDISVKFVPTTEQHADLLTKALSRANLQYHRRKLMNLPE 386
[Close]
BLAST of mRNA_P-littoralis_Contig1300.3.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 1.200e-64
Identity = 112/153 (73.20%), Postives = 129/153 (84.31%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAFVSHKRSTQPIVSNSSAESEYIAAGEGLREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVMSVEHVRTEEQHADVLTKAPSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG  +SH   TQ IVS SS E+EYIAAGEG++EALFVR VLSFIAPETSGS+I+VLEDN+GAMAL+QNPLSS RSKHIDVR+HFIR LFRSG +S++ V T EQHAD+LTKA S+   +YHR+ LMNLPE
Sbjct:  445 YVDASYAD-AEDRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVRAVLSFIAPETSGSSIQVLEDNQGAMALVQNPLSSARSKHIDVRYHFIRGLFRSGDISIKFVSTSEQHADMLTKALSKSSLQYHRRKLMNLPE 596
[Close]
BLAST of mRNA_P-littoralis_Contig1300.3.1 vs. uniprot
Match: A0A6H5K9K6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K6_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 2.230e-64
Identity = 107/152 (70.39%), Postives = 125/152 (82.24%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAFVSHKRSTQPIVSNSSAESEYIAAGEGLREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVMSVEHVRTEEQHADVLTKAPSRDLFRYHRKALMNLP 457
            YVDASYAD    RRSV+GIA  VGG  VSH   TQ IVS S++E+EYIAAGEG++EALFVR VLSFIAPETSG+ IKVLEDN+GA++L+QNP SS RSKHIDVRFHFIRELF+SG +SVE++ T+EQHAD+LTKA  R     HR ALMN+P
Sbjct:  219 YVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKALGRTKLEDHRNALMNIP 370
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BLAST of mRNA_P-littoralis_Contig1300.3.1 vs. uniprot
Match: A0A6H5JQH8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH8_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 2.620e-63
Identity = 107/153 (69.93%), Postives = 125/153 (81.70%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAFVSHKRSTQPIVSNSSAESEYIAAGEGLREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVMSVEHVRTEEQHADVLTKAPSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRS+SG+AT VGG  VSH   TQ IVS SS E+EYIAAGEG++EALFVR VLSF+APE SGS+I+VLE N+GA+AL+QNPLSSGR+KHIDVRFHFIR LFR G ++V+ V T EQHAD+LTK  SR   +YHR+ LM LPE
Sbjct:  101 YVDASYADTK-DRRSMSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRDVLSFVAPEPSGSSIQVLEGNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRPGDIAVKFVPTTEQHADLLTKGLSRASLQYHRRKLMILPE 252
[Close]
BLAST of mRNA_P-littoralis_Contig1300.3.1 vs. uniprot
Match: A0A6H5KQ05_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ05_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 2.900e-63
Identity = 109/153 (71.24%), Postives = 129/153 (84.31%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAFVSHKRSTQPIVSNSSAESEYIAAGEGLREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVMSVEHVRTEEQHADVLTKAPSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG  +SH  +TQ IVS SS E+EYIAAGEG++EALFVR VLSF+ PETSGS+I+VL+DN+GA+AL+QNPL SGR+KHIDVR+HFIR LFRSG +SV+ V T EQHAD+LTKA SR   +YHR+ LMNLPE
Sbjct:  352 YVDASYADTE-DRRSVSGLATTVGGTVISHGSNTQSIVSVSSTEAEYIAAGEGVKEALFVRAVLSFVPPETSGSSIEVLDDNQGAIALVQNPLRSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRVSLQYHRRKLMNLPE 503
[Close]
BLAST of mRNA_P-littoralis_Contig1300.3.1 vs. uniprot
Match: A0A6H5KPN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPN5_9PHAE)

HSP 1 Score: 203 bits (517), Expect = 4.470e-63
Identity = 107/153 (69.93%), Postives = 125/153 (81.70%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAFVSHKRSTQPIVSNSSAESEYIAAGEGLREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVMSVEHVRTEEQHADVLTKAPSRDLFRYHRKALMNLPE 460
            YVDASYAD   DRRSVSG+AT VGG  VSH   TQ IVS S+ E+EYIAA +G++EALFVR V SF+ PETSGS+I+VLEDN+GA+AL+QNPLSSGR+KHIDVRFHFIR LFRSG +SV+ V T EQHAD+LTKA SR   +YHR+   NLPE
Sbjct:  107 YVDASYADTE-DRRSVSGLATTVGGTVVSHGSKTQSIVSLSATEAEYIAAEDGVKEALFVRAVQSFVVPETSGSSIQVLEDNQGAIALVQNPLSSGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHADLLTKALSRASLQYHRRKPTNLPE 258
[Close]
BLAST of mRNA_P-littoralis_Contig1300.3.1 vs. uniprot
Match: A0A6H5KCR8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR8_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 5.190e-63
Identity = 98/152 (64.47%), Postives = 120/152 (78.95%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAFVSHKRSTQPIVSNSSAESEYIAAGEGLREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVMSVEHVRTEEQHADVLTKAPSRDLFRYHRKALMNLP 457
            +VD+SYAD   DRRS +G+A  VGG  V     TQP+ + S+ E+EYIAAGEG++EALFVR VLSFIAPETSG+TI+V EDNEGA+AL+QNP SS RSKHIDVRF FIREL ++G ++ +++ TEEQHAD+LTK   R    YHRKALMNLP
Sbjct:   33 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVREDNEGALALVQNPFSSTRSKHIDVRFPFIRELVKAGKITADYISTEEQHADMLTKVLGRGKLEYHRKALMNLP 184
[Close]
BLAST of mRNA_P-littoralis_Contig1300.3.1 vs. uniprot
Match: A0A6H5KCN6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN6_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 5.340e-63
Identity = 101/151 (66.89%), Postives = 122/151 (80.79%), Query Frame = 2 
Query:    2 YVDASYADDPADRRSVSGIATMVGGAFVSHKRSTQPIVSNSSAESEYIAAGEGLREALFVRHVLSFIAPETSGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVMSVEHVRTEEQHADVLTKAPSRDLFRYHRKALMNL 454
            +VD+SYAD   DRRS +G+A  VGG  V     TQP+ + S+ E+EYIAAGEG++EALFVR VLSFIAPETSG+TI+VLEDNEGA+AL+QNP SS RSKHIDVRFHFIRELF++G ++ ++V TEEQHAD+LTK   R    YHRKALMNL
Sbjct:  261 FVDSSYADSTVDRRSTTGLAVTVGGTVVCASTKTQPVTAQSTTEAEYIAAGEGVKEALFVRGVLSFIAPETSGATIRVLEDNEGALALVQNPFSSARSKHIDVRFHFIRELFKAGKITADYVSTEEQHADMLTKVLGRGKLEYHRKALMNL 411
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1300.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L589_9PHAE1.430e-6773.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR64_9PHAE1.130e-6566.45Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGI0_9PHAE8.360e-6571.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGX6_9PHAE1.200e-6473.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K6_9PHAE2.230e-6470.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JQH8_9PHAE2.620e-6369.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQ05_9PHAE2.900e-6371.24Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KPN5_9PHAE4.470e-6369.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCR8_9PHAE5.190e-6364.47Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN6_9PHAE5.340e-6366.89Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1300contigP-littoralis_Contig1300:8888..9386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog67593.Physo133508
PFAMsRVT_2,Retrotran_gag_2,rve
Model size499
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.5e-21
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QHHC@4776|Peronosporales
Descriptiongag-polypeptide of LTR copia-type
Cds size399
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.0008345-UTR-P-littoralis_Contig1300:8887..89511680789594.0008345-UTR-P-littoralis_Contig1300:8887..8951Pylaiella littoralis U1_48UTRP-littoralis_Contig1300 8888..8951 +
1680789594.0259624-UTR-P-littoralis_Contig1300:9350..93861680789594.0259624-UTR-P-littoralis_Contig1300:9350..9386Pylaiella littoralis U1_48UTRP-littoralis_Contig1300 9351..9386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789594.0142076-CDS-P-littoralis_Contig1300:8951..93501680789594.0142076-CDS-P-littoralis_Contig1300:8951..9350Pylaiella littoralis U1_48CDSP-littoralis_Contig1300 8952..9350 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1300.3.1prot_P-littoralis_Contig1300.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1300 8952..9350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1300.3.1

>prot_P-littoralis_Contig1300.3.1 ID=prot_P-littoralis_Contig1300.3.1|Name=mRNA_P-littoralis_Contig1300.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MVGGAFVSHKRSTQPIVSNSSAESEYIAAGEGLREALFVRHVLSFIAPET
SGSTIKVLEDNEGAMALIQNPLSSGRSKHIDVRFHFIRELFRSGVMSVEH
VRTEEQHADVLTKAPSRDLFRYHRKALMNLPE*
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mRNA from alignment at P-littoralis_Contig1300:8888..9386+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1300.3.1 ID=mRNA_P-littoralis_Contig1300.3.1|Name=mRNA_P-littoralis_Contig1300.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=499bp|location=Sequence derived from alignment at P-littoralis_Contig1300:8888..9386+ (Pylaiella littoralis U1_48)
GTACGTCGACGCGAGCTACGCCGACGACCCGGCTGATAGACGTTCGGTCT
CCGGTATAGCAACCATGGTCGGTGGGGCTTTCGTCAGCCACAAACGTTCA
ACGCAGCCGATAGTTTCGAACTCCTCAGCAGAGTCAGAGTACATTGCGGC
TGGGGAGGGCCTGAGAGAGGCGTTGTTTGTGCGGCATGTGCTTTCGTTTA
TTGCGCCGGAGACGAGTGGTAGCACAATCAAGGTCCTTGAGGACAACGAG
GGGGCTATGGCGCTGATTCAAAACCCTCTCAGCTCTGGCCGTAGCAAACA
CATAGACGTGCGCTTCCATTTTATTCGGGAGTTGTTTAGATCGGGGGTCA
TGTCGGTCGAGCACGTCAGGACAGAGGAACAGCACGCCGACGTTCTCACC
AAGGCGCCGAGCCGGGACTTGTTCCGGTACCACCGGAAAGCATTGATGAA
TTTGCCGGAGTAGGCGACTGTTTTCCCGTCTTTGTTTTGAGCACAGGCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1300:8888..9386+

>mRNA_P-littoralis_Contig1300.3.1 ID=mRNA_P-littoralis_Contig1300.3.1|Name=mRNA_P-littoralis_Contig1300.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=399bp|location=Sequence derived from alignment at P-littoralis_Contig1300:8888..9386+ (Pylaiella littoralis U1_48)
ATGGTCGGTGGGGCTTTCGTCAGCCACAAACGTTCAACGCAGCCGATAGT
TTCGAACTCCTCAGCAGAGTCAGAGTACATTGCGGCTGGGGAGGGCCTGA
GAGAGGCGTTGTTTGTGCGGCATGTGCTTTCGTTTATTGCGCCGGAGACG
AGTGGTAGCACAATCAAGGTCCTTGAGGACAACGAGGGGGCTATGGCGCT
GATTCAAAACCCTCTCAGCTCTGGCCGTAGCAAACACATAGACGTGCGCT
TCCATTTTATTCGGGAGTTGTTTAGATCGGGGGTCATGTCGGTCGAGCAC
GTCAGGACAGAGGAACAGCACGCCGACGTTCTCACCAAGGCGCCGAGCCG
GGACTTGTTCCGGTACCACCGGAAAGCATTGATGAATTTGCCGGAGTAG
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