mRNA_P-littoralis_Contig1300.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1300.2.1
Unique NamemRNA_P-littoralis_Contig1300.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1300.2.1 vs. uniprot
Match: A0A6H5L4M4_9PHAE (Resolvase/invertase-type recombinase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M4_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 5.380e-111
Identity = 177/195 (90.77%), Postives = 187/195 (95.90%), Query Frame = 1
Query:    1 MAYVNTKTAIERLGVSNVNLRKWGKPEAIPTIGTPGGQRLYDIETFQKTQALRSEESRLCARKIAKERRNASRIDIGYARVSSAKQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKL*RCIMQEQIDRVLVAYKDRLCRFAFEIIQFVCDENNTELVVLNQNENGSAETELMEDLMAVVHVFSSRLYG 585
            MA+VNTKTAIERLGVSNV LRKW K EAIPTI TPGGQR+YDIETFQKTQALRSEE+RLCAR++AK+++NASRIDIGYARVS +KQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKL RCIMQ QIDRVLVAYKDRLCRFAFEIIQF+CDENNTELVVLNQNENGSAE ELMEDLMAVVHVFSSRLYG
Sbjct:    1 MAFVNTKTAIERLGVSNVTLRKWDKLEAIPTIRTPGGQRVYDIETFQKTQALRSEEARLCARRMAKDKKNASRIDIGYARVSFSKQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKLLRCIMQGQIDRVLVAYKDRLCRFAFEIIQFICDENNTELVVLNQNENGSAEAELMEDLMAVVHVFSSRLYG 195          
BLAST of mRNA_P-littoralis_Contig1300.2.1 vs. uniprot
Match: A0A1W9L0A6_9GAMM (DNA invertase n=1 Tax=Beggiatoa sp. IS2 TaxID=1934247 RepID=A0A1W9L0A6_9GAMM)

HSP 1 Score: 156 bits (395), Expect = 5.100e-45
Identity = 79/195 (40.51%), Postives = 119/195 (61.03%), Query Frame = 1
Query:    1 MAYVNTKTAIERLGVSNVNLRKWGKPEAIPTIGTPGGQRLYDIETFQKTQALRSEESRLCARKIAKERRNASRIDIGYARVSSAKQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKL*RCIMQEQIDRVLVAYKDRLCRFAFEIIQFVCDENNTELVVLNQNENGSAETELMEDLMAVVHVFSSRLYG 585
            MAYVNT+TA  RLGV +  LR W +   I T+ TPGG RLYD+++ +                       + R    YARVSS  QK+DL  Q ++++   P   ++ DIGSGLNFKRKG   L   +M  Q+  ++V +KDRLCRF +E+I+ +  +N+ +++VL++++  S + EL+ DL++++HVFS RLYG
Sbjct:    1 MAYVNTRTACNRLGVHSNTLRNWDRDGKIKTMRTPGGIRLYDLDSLE-----------------------SDRRKFIYARVSSRNQKDDLNSQIEYLKTRFPNHELIEDIGSGLNFKRKGLNTLLELVMSGQVSEIIVTHKDRLCRFGYELIEAIATKNSCKIMVLDESKL-SPQAELVNDLLSIIHVFSCRLYG 171          
BLAST of mRNA_P-littoralis_Contig1300.2.1 vs. uniprot
Match: A0A1U7N6P8_9CYAN (DNA invertase n=11 Tax=Moorena TaxID=1155738 RepID=A0A1U7N6P8_9CYAN)

HSP 1 Score: 151 bits (382), Expect = 4.550e-43
Identity = 82/195 (42.05%), Postives = 119/195 (61.03%), Query Frame = 1
Query:    1 MAYVNTKTAIERLGVSNVNLRKWGKPEAIPTIGTPGGQRLYDIETFQKTQALRSEESRLCARKIAKERRNASRIDIGYARVSSAKQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKL*RCIMQEQIDRVLVAYKDRLCRFAFEIIQFVCDENNTELVVLNQNENGSAETELMEDLMAVVHVFSSRLYG 585
            M YV  + A E LGVS   LR W +   I TI TP  QR YD+++                  +  E +N  +  I YARVS+ +QKEDL RQ  F++   P   ++ DIGSGLN++RKG K L   ++   +  ++VA+KDR+ RF FE+I+++C++N   +VVL+Q+ N S E E++ED++A+VHVFS RLYG
Sbjct:    1 MRYVPPRKAREILGVSERTLRYWEQEGKIKTIRTPSNQRRYDVDS------------------VLGEVKN--KPTIIYARVSTRRQKEDLERQAAFLQGKFPNAEVIKDIGSGLNYRRKGLKALLGRVLSRDVSEIVVAHKDRMARFGFELIEWICEQNGCRIVVLDQS-NLSPEREMVEDILAIVHVFSCRLYG 174          
BLAST of mRNA_P-littoralis_Contig1300.2.1 vs. uniprot
Match: A0A6P0SSH2_9CYAN (IS607 family transposase n=5 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0SSH2_9CYAN)

HSP 1 Score: 150 bits (380), Expect = 1.380e-42
Identity = 86/193 (44.56%), Postives = 118/193 (61.14%), Query Frame = 1
Query:    7 YVNTKTAIERLGVSNVNLRKWGKPEAIPTIGTPGGQRLYDIETFQKTQALRSEESRLCARKIAKERRNASRIDIGYARVSSAKQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKL*RCIMQEQIDRVLVAYKDRLCRFAFEIIQFVCDENNTELVVLNQNENGSAETELMEDLMAVVHVFSSRLYG 585
            YV  + A  RLGVS   L +W +   I  I TPGGQR YD+ +     ++RSE+ R              R  I YARVSS  QK DL +Q QF++   P   I+ DIGSGLNFKRKG + L   ++      V+VA+KDRLCRF F++I ++C +  T+++VL++  N S E E++ED++AV+HVFS RLYG
Sbjct:    7 YVPPRVASNRLGVSTKTLERWLESGKIQGIKTPGGQRRYDLNSVV---SIRSEKIR------------TDRSTILYARVSSRSQKNDLEQQVQFLQSRYPDAEIIKDIGSGLNFKRKGLQALLDRVIGGSCKYVVVAHKDRLCRFGFDLISWLCSKFQTKILVLDEK-NLSPEQEMVEDVLAVIHVFSCRLYG 183          
BLAST of mRNA_P-littoralis_Contig1300.2.1 vs. uniprot
Match: A0A846H8F0_9CYAN (IS607 family transposase n=1 Tax=Hassallia byssoidea VB512170 TaxID=1304833 RepID=A0A846H8F0_9CYAN)

HSP 1 Score: 150 bits (380), Expect = 1.380e-42
Identity = 83/193 (43.01%), Postives = 111/193 (57.51%), Query Frame = 1
Query:    7 YVNTKTAIERLGVSNVNLRKWGKPEAIPTIGTPGGQRLYDIETFQKTQALRSEESRLCARKIAKERRNASRIDIGYARVSSAKQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKL*RCIMQEQIDRVLVAYKDRLCRFAFEIIQFVCDENNTELVVLNQNENGSAETELMEDLMAVVHVFSSRLYG 585
            YV+   A   LGV+   LR+W K E I  I T GGQR YDI  F                          R  + YARVSS KQ+EDL RQ  ++    P   I+++IG GLN+KRK F  L   +MQ  I+R+++AYKDRL RF F+   ++C  N+ E+VVLNQ E  S E E++ED++A++H FS+RLYG
Sbjct:    5 YVSPADAARTLGVNERTLRRWEKEEKITAIRTVGGQRRYDITAFTTKPV---------------------RCTVIYARVSSPKQREDLQRQCDYLESKYPNSEIIAEIGGGLNYKRKKFLALLERVMQGDIERIVIAYKDRLARFGFDFFAWLCSLNSCEIVVLNQVEL-SPEREMVEDILAILHCFSARLYG 175          
BLAST of mRNA_P-littoralis_Contig1300.2.1 vs. uniprot
Match: A0A6M0GB08_9CYAN (IS607 family transposase n=1 Tax=Symploca sp. SIO2E6 TaxID=2607809 RepID=A0A6M0GB08_9CYAN)

HSP 1 Score: 150 bits (379), Expect = 1.680e-42
Identity = 78/193 (40.41%), Postives = 121/193 (62.69%), Query Frame = 1
Query:    7 YVNTKTAIERLGVSNVNLRKWGKPEAIPTIGTPGGQRLYDIETFQKTQALRSEESRLCARKIAKERRNASRIDIGYARVSSAKQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKL*RCIMQEQIDRVLVAYKDRLCRFAFEIIQFVCDENNTELVVLNQNENGSAETELMEDLMAVVHVFSSRLYG 585
            ++  + A   LGV    L +W +   I  I TP GQR YD+E++QK      E              ++SR+ I YARVSS KQK DL RQ   + +  P    ++DIGSGLN+KR+G  +L + +++ ++  +++A+KDRL RF FE+I+++C ENN ++++LNQ E  S E E++ED++++VH+FS RLYG
Sbjct:    5 FLPPREAAAALGVHRRTLTRWEQQGKIVAIRTPSGQRRYDVESYQKKNLNYGEAHT-----------DSSRLTITYARVSSRKQKVDLDRQVAVLTNLYPHGKSITDIGSGLNYKRQGLIQLLKFVLEGKVKLIIIAHKDRLVRFGFELIEWLCTENNCKIIILNQ-ETLSPEKEMIEDILSIVHIFSCRLYG 185          
BLAST of mRNA_P-littoralis_Contig1300.2.1 vs. uniprot
Match: A0A839HLC5_9GAMM (IS607 family transposase n=2 Tax=Thiospirillum jenense TaxID=1653858 RepID=A0A839HLC5_9GAMM)

HSP 1 Score: 148 bits (374), Expect = 8.500e-42
Identity = 83/193 (43.01%), Postives = 112/193 (58.03%), Query Frame = 1
Query:    7 YVNTKTAIERLGVSNVNLRKWGKPEAIPTIGTPGGQRLYDIETFQKTQALRSEESRLCARKIAKERRNASRIDIGYARVSSAKQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKL*RCIMQEQIDRVLVAYKDRLCRFAFEIIQFVCDENNTELVVLNQNENGSAETELMEDLMAVVHVFSSRLYG 585
            YV T+ A +RLG     LR+W     IP I T  GQR YD++ + + Q                      RI I Y RVSS KQ+ DL RQ QF+R+  P   I+ DIGSGLNFKRKG K +    M+    +++VA++DRL RF +E+IQ V + N  ELVVL+Q  + S E EL +DL+ ++HVFS R++G
Sbjct:    4 YVTTREAAKRLGCHPETLRRWANAGKIPHIRTSSGQRRYDVDAYLRIQT--------------------QRIVISYCRVSSFKQRHDLDRQVQFMRNQYPQAEIIKDIGSGLNFKRKGLKTILERAMRGDCIQLVVAHRDRLARFGYELIQQVIEHNGGELVVLDQTSH-SPEHELTKDLLNILHVFSYRMHG 175          
BLAST of mRNA_P-littoralis_Contig1300.2.1 vs. uniprot
Match: UPI0005A2CEF3 (IS607 family transposase n=1 Tax=Allocoleopsis franciscana TaxID=2886352 RepID=UPI0005A2CEF3)

HSP 1 Score: 148 bits (374), Expect = 9.830e-42
Identity = 80/193 (41.45%), Postives = 112/193 (58.03%), Query Frame = 1
Query:    7 YVNTKTAIERLGVSNVNLRKWGKPEAIPTIGTPGGQRLYDIETFQKTQALRSEESRLCARKIAKERRNASRIDIGYARVSSAKQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKL*RCIMQEQIDRVLVAYKDRLCRFAFEIIQFVCDENNTELVVLNQNENGSAETELMEDLMAVVHVFSSRLYG 585
            +V  + A  RLGVS   L +W +   I    TPGGQR YD+++                        +  RI I YARVSS  QK DL  Q  F++   P   I+ DIGSGLN++RKGF  L   I+   +  V+VA+KDRLCRF F+++ ++C+    EL+VLNQ+ + S E E++ED++A++HVFS RLYG
Sbjct:    7 HVPPRVAAARLGVSTKTLERWLEAGKIKAFITPGGQRRYDLDSIIPAG-------------------DTERISIIYARVSSRSQKNDLLTQIDFLQSHYPNAKIIQDIGSGLNYRRKGFLSLLERILSNDVGLVVVAHKDRLCRFGFDLVAWLCERQKCELLVLNQS-HLSPEREMVEDILAIIHVFSCRLYG 179          
BLAST of mRNA_P-littoralis_Contig1300.2.1 vs. uniprot
Match: A0A6P0SVG0_9CYAN (IS607 family transposase n=2 Tax=unclassified Moorena TaxID=2683338 RepID=A0A6P0SVG0_9CYAN)

HSP 1 Score: 148 bits (374), Expect = 1.140e-41
Identity = 80/193 (41.45%), Postives = 115/193 (59.59%), Query Frame = 1
Query:    7 YVNTKTAIERLGVSNVNLRKWGKPEAIPTIGTPGGQRLYDIETFQKTQALRSEESRLCARKIAKERRNASRIDIGYARVSSAKQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKL*RCIMQEQIDRVLVAYKDRLCRFAFEIIQFVCDENNTELVVLNQNENGSAETELMEDLMAVVHVFSSRLYG 585
            YV  + A  RLGVS   L +W +   I  I TPGGQR YD+++       +++                 R  I YARVSS  QK DL +Q QF++   P   I+ D+GSGLNFKRKG + L   ++      ++VA+KDRLCRF F++I ++C +  T+++VL++  N S E E++ED++AV+HVFS RLYG
Sbjct:    7 YVPPRVASIRLGVSTRTLERWLEEGKIQGIKTPGGQRRYDLDSVVSIPTKKTD--------------RGDRATILYARVSSRSQKNDLEQQVQFLKSRYPKAEIIKDVGSGLNFKRKGLQSLLDRVLNGTCKYIVVAHKDRLCRFGFDLISWLCSKFQTKILVLDEK-NLSPEQEMVEDVLAVIHVFSCRLYG 184          
BLAST of mRNA_P-littoralis_Contig1300.2.1 vs. uniprot
Match: A0A1U7MZ12_9CYAN (DNA invertase n=12 Tax=Moorena TaxID=1155738 RepID=A0A1U7MZ12_9CYAN)

HSP 1 Score: 148 bits (373), Expect = 1.390e-41
Identity = 81/193 (41.97%), Postives = 119/193 (61.66%), Query Frame = 1
Query:    7 YVNTKTAIERLGVSNVNLRKWGKPEAIPTIGTPGGQRLYDIETFQKTQALRSEESRLCARKIAKERRNASRIDIGYARVSSAKQKEDLGRQEQFIRDSCPGISILSDIGSGLNFKRKGFKKL*RCIMQEQIDRVLVAYKDRLCRFAFEIIQFVCDENNTELVVLNQNENGSAETELMEDLMAVVHVFSSRLYG 585
            YV  + A +RLGVS   L +W +   I  I TPGGQR YD+++                   AK +R+     I YARVSS  QK DL +Q +F++   PG  ++ DIGSGLNFKRKG + L   ++    + ++VA+KDRLCRF F++I ++C +  T+++VL++  + S E E++ED++A+VHVFS RLYG
Sbjct:    5 YVPPRVAAQRLGVSTRTLERWLEAGKIKGIKTPGGQRRYDLDSVVSIPP-------------AKPKRDI----ILYARVSSRSQKSDLEQQVRFLKSRYPGCEVIFDIGSGLNFKRKGLQSLLDRVLSNTCELIVVAHKDRLCRFGFDLISWLCGKFETKILVLDET-HLSPEQEMVEDILAIVHVFSCRLYG 179          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1300.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4M4_9PHAE5.380e-11190.77Resolvase/invertase-type recombinase catalytic dom... [more]
A0A1W9L0A6_9GAMM5.100e-4540.51DNA invertase n=1 Tax=Beggiatoa sp. IS2 TaxID=1934... [more]
A0A1U7N6P8_9CYAN4.550e-4342.05DNA invertase n=11 Tax=Moorena TaxID=1155738 RepID... [more]
A0A6P0SSH2_9CYAN1.380e-4244.56IS607 family transposase n=5 Tax=unclassified Moor... [more]
A0A846H8F0_9CYAN1.380e-4243.01IS607 family transposase n=1 Tax=Hassallia byssoid... [more]
A0A6M0GB08_9CYAN1.680e-4240.41IS607 family transposase n=1 Tax=Symploca sp. SIO2... [more]
A0A839HLC5_9GAMM8.500e-4243.01IS607 family transposase n=2 Tax=Thiospirillum jen... [more]
UPI0005A2CEF39.830e-4241.45IS607 family transposase n=1 Tax=Allocoleopsis fra... [more]
A0A6P0SVG0_9CYAN1.140e-4141.45IS607 family transposase n=2 Tax=unclassified Moor... [more]
A0A1U7MZ12_9CYAN1.390e-4141.97DNA invertase n=12 Tax=Moorena TaxID=1155738 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1300contigP-littoralis_Contig1300:3917..4501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1173022.Cri9333_4197
PFAMsMerR,MerR_1,Resolvase
Model size585
Max annot lvl1117|Cyanobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.95e-20
EggNOG OGsCOG2452@1|root,COG2452@2|Bacteria,1G5BW@1117|Cyanobacteria,1HB7Q@1150|Oscillatoriales
DescriptionResolvase, N terminal domain
Cds size375
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789593.9586391-UTR-P-littoralis_Contig1300:3916..41261680789593.9586391-UTR-P-littoralis_Contig1300:3916..4126Pylaiella littoralis U1_48UTRP-littoralis_Contig1300 3917..4126 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789593.9716628-CDS-P-littoralis_Contig1300:4126..45011680789593.9716628-CDS-P-littoralis_Contig1300:4126..4501Pylaiella littoralis U1_48CDSP-littoralis_Contig1300 4127..4501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1300.2.1prot_P-littoralis_Contig1300.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1300 4127..4501 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1300.2.1

>prot_P-littoralis_Contig1300.2.1 ID=prot_P-littoralis_Contig1300.2.1|Name=mRNA_P-littoralis_Contig1300.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=125bp
MAYVNTKTAIERLGVSNVNLRKWGKPEAIPTIGTPGGQRLYDIETFQKTQ
ALRSEESRLCARKIAKERRNASRIDIGYARVSSAKQKEDLGRQEQFIRDS
CPGISILSDIGSGLNFKRKGFKKL*
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mRNA from alignment at P-littoralis_Contig1300:3917..4501-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1300.2.1 ID=mRNA_P-littoralis_Contig1300.2.1|Name=mRNA_P-littoralis_Contig1300.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=585bp|location=Sequence derived from alignment at P-littoralis_Contig1300:3917..4501- (Pylaiella littoralis U1_48)
ATGGCATATGTCAACACCAAGACTGCCATCGAACGCCTCGGGGTCTCCAA TGTTAACCTAAGAAAATGGGGCAAGCCCGAAGCAATCCCGACCATTGGAA CCCCGGGTGGTCAACGTCTTTACGACATCGAAACCTTCCAAAAAACGCAG GCGCTCCGATCAGAGGAATCAAGGCTTTGTGCAAGAAAAATCGCAAAAGA AAGAAGGAACGCGTCCCGCATCGACATCGGATACGCGAGAGTATCGTCCG CAAAGCAGAAAGAGGATCTCGGGAGACAAGAACAGTTCATCAGAGATTCG TGCCCGGGGATATCGATACTATCTGACATCGGATCCGGACTCAACTTTAA AAGGAAAGGCTTCAAAAAGCTTTGACGATGTATCATGCAGGAACAGATCG ATCGCGTGCTGGTTGCCTACAAGGACAGACTGTGCAGATTTGCTTTCGAA ATCATCCAGTTCGTCTGTGACGAAAACAACACAGAACTCGTGGTTCTCAA TCAAAACGAAAACGGTTCTGCAGAGACAGAACTCATGGAGGACCTCATGG CCGTCGTCCACGTTTTCAGTTCGAGACTCTATGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1300:3917..4501-

>mRNA_P-littoralis_Contig1300.2.1 ID=mRNA_P-littoralis_Contig1300.2.1|Name=mRNA_P-littoralis_Contig1300.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=375bp|location=Sequence derived from alignment at P-littoralis_Contig1300:3917..4501- (Pylaiella littoralis U1_48)
ATGGCATATGTCAACACCAAGACTGCCATCGAACGCCTCGGGGTCTCCAA
TGTTAACCTAAGAAAATGGGGCAAGCCCGAAGCAATCCCGACCATTGGAA
CCCCGGGTGGTCAACGTCTTTACGACATCGAAACCTTCCAAAAAACGCAG
GCGCTCCGATCAGAGGAATCAAGGCTTTGTGCAAGAAAAATCGCAAAAGA
AAGAAGGAACGCGTCCCGCATCGACATCGGATACGCGAGAGTATCGTCCG
CAAAGCAGAAAGAGGATCTCGGGAGACAAGAACAGTTCATCAGAGATTCG
TGCCCGGGGATATCGATACTATCTGACATCGGATCCGGACTCAACTTTAA
AAGGAAAGGCTTCAAAAAGCTTTGA
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