mRNA_P-littoralis_Contig1300.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1300.1.1
Unique NamemRNA_P-littoralis_Contig1300.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1300.1.1 vs. uniprot
Match: A0A6H5L4M4_9PHAE (Resolvase/invertase-type recombinase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4M4_9PHAE)

HSP 1 Score: 249 bits (636), Expect = 5.470e-74
Identity = 119/126 (94.44%), Postives = 121/126 (96.03%), Query Frame = 1
Query:    1 SKSKLTKGWRNVSKRIANLVNEMHNKVALYLVRNYDVIMVGRLSKGVMKTKSHRNQKLLHASLKHYQFRQRLLNKANDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVFNCPKCKHSCDRDIHS 378
            SKSKLTKGWR VSKRIANLVNEMHNKVALYLVRNYD+IMVGRLS GVMKTKSHRNQKLLHASLKHYQFRQRL+N  NDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVF CPKCKHSCDRDIHS
Sbjct:  448 SKSKLTKGWRKVSKRIANLVNEMHNKVALYLVRNYDIIMVGRLSNGVMKTKSHRNQKLLHASLKHYQFRQRLINNGNDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVFTCPKCKHSCDRDIHS 573          
BLAST of mRNA_P-littoralis_Contig1300.1.1 vs. uniprot
Match: A0A349JKJ7_9CYAN (Transposase n=3 Tax=unclassified Microcoleaceae TaxID=2053578 RepID=A0A349JKJ7_9CYAN)

HSP 1 Score: 84.7 bits (208), Expect = 4.530e-17
Identity = 45/122 (36.89%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   43 RIANLVNEMHNKVALYLVRNYDVIMVGRLSKGVMKTKSHRNQKLLHA----SLKHYQFRQRLLNKANDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVFNCPKCKHSCDRDIHSGRFIWL 396
            +I NLV+E+HNK A YLV  Y +I +       M  K  R      A    +L HY+F+Q L ++A  +G  V  V E+ T+K C +CG ++ K+   + F CP+C H+ DRD++    I L
Sbjct:  114 KIKNLVSELHNKTANYLVSKYKLIFLPTFETQQMVNKGKRKLTTKTARAMVTLSHYRFKQTLKHQATKYGCVVVDVTEEYTSKTCSKCGHVHRKLSGSKTFKCPECGHTLDRDLNGAFNILL 235          
BLAST of mRNA_P-littoralis_Contig1300.1.1 vs. uniprot
Match: A7RAM2_PBCVA (Uncharacterized protein C068R n=1 Tax=Paramecium bursaria Chlorella virus AR158 TaxID=380598 RepID=A7RAM2_PBCVA)

HSP 1 Score: 85.5 bits (210), Expect = 1.300e-16
Identity = 51/140 (36.43%), Postives = 78/140 (55.71%), Query Frame = 1
Query:    4 KSKLTKGWR-NVSKRIANLVNEMHNKVALYLVRNYDVIMVG--RLSKGVMKTKSHRNQKL------LHASLKHYQFRQRLLNKANDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVFNCPKCKHSCDRDIHSGRFIWL 396
            K K T+G R  + +R+ NLV+EMH K+A  L  +YD I++      K   K K+ R +K+      +   L HY+FR+RL++ AN  G +V I  E+ T+K C  CG +N  + + + F CP+C    DRD +  R I +
Sbjct:  404 KDKRTRGKRLRLERRVGNLVDEMHWKIARELATDYDTIIIPPFETQKMAKKWKNGRYRKINKTAVRMMLRLAHYRFRERLIHVANKLGTRVVICTEEYTSKTCGNCGVVNADLGSAKKFKCPRCHIHVDRDGNGARNILI 543          
BLAST of mRNA_P-littoralis_Contig1300.1.1 vs. uniprot
Match: K9YGA5_HALP7 (Transposase, IS605 OrfB family n=3 Tax=Halothece sp. (strain PCC 7418) TaxID=65093 RepID=K9YGA5_HALP7)

HSP 1 Score: 78.2 bits (191), Expect = 4.090e-14
Identity = 48/133 (36.09%), Postives = 70/133 (52.63%), Query Frame = 1
Query:   10 KLTKGWRNVSKRIANLVNEMHNKVALYLVRNYDVIMVGRL--SKGVMKTKSHRNQKLLHA--SLKHYQFRQRLLNKANDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVFNCPKCKHSCDRDIHSGRFIWL 396
            K+ K    +  RI NLV ++HNKVA +LV  Y VI +     S+ V+K K   N K   +  +L H++F + LL+KA   G  V    E  T+K C  CG I+ ++   + F CP C ++  RD +  R I L
Sbjct:  272 KMRKAATQIRHRIQNLVKDLHNKVAKFLVSCYKVIFLPTFNTSEMVLKDKRKINSKTARSMMTLSHHKFAEHLLHKAKRKGVLVVRCNESYTSKTCPECGHIHDRLGGSKKFKCPSCGYTVHRDWNGARNIML 404          
BLAST of mRNA_P-littoralis_Contig1300.1.1 vs. uniprot
Match: A0A845YEN4_9CYAN (Transposase n=2 Tax=Symploca sp. SIO2G7 TaxID=2607798 RepID=A0A845YEN4_9CYAN)

HSP 1 Score: 76.3 bits (186), Expect = 1.570e-13
Identity = 44/132 (33.33%), Postives = 66/132 (50.00%), Query Frame = 1
Query:   13 LTKGWRNVSKRIANLVNEMHNKVALYLVRNYDVIMVGRLSKGVMKTKSHRN--QKLLHASL--KHYQFRQRLLNKANDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVFNCPKCKHSCDRDIHSGRFIWL 396
            + K    + ++I NLV ++HNK A +LV NY V+ +       M  KS R   +K     L   H++F+Q LL  A      V +  E  T+K C  CG I+ K+   + F CP+C +S  RD +  R I +
Sbjct:  213 MRKASHRIRRKIQNLVKDLHNKAARFLVDNYKVVFLPTFDTSEMVVKSKRKLAKKTARNMLTWSHFKFKQHLLQMAQRERVIVVLCNESYTSKTCPECGHIHSKLGGNKKFQCPQCGYSAHRDWNGARNIMI 344          
BLAST of mRNA_P-littoralis_Contig1300.1.1 vs. uniprot
Match: UPI001E1D2CBE (uncharacterized protein LOC123543738 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D2CBE)

HSP 1 Score: 76.3 bits (186), Expect = 2.110e-13
Identity = 40/128 (31.25%), Postives = 67/128 (52.34%), Query Frame = 1
Query:   43 RIANLVNEMHNKVALYLVRNYDVIMVGRLSKGVMKTKSHRNQKLLHASL-----KHYQFRQRLLNKANDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVFNCPKCKHSCDRDIHSGRFIWLGYHGL 411
            ++   V+++H K+  YLV+NY ++++G++S   +  K   N      +      +HY+FRQRLL++  D   +     E+ T+K C  CG  N K+  +E F C  C +   RD++  R I   Y GL
Sbjct:  346 KLKTYVDDVHLKLCSYLVKNYKLVVLGKISVSSIVRKDRPNHLAKKGNRDLLCWQHYRFRQRLLHRVRDTDCEAVAQDERYTSKTCGNCGVKNNKLGGKETFICESCNYKTHRDVNGARNILCKYLGL 473          
BLAST of mRNA_P-littoralis_Contig1300.1.1 vs. uniprot
Match: UPI001E1DA77B (uncharacterized protein LOC123544810 isoform X1 n=5 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA77B)

HSP 1 Score: 76.3 bits (186), Expect = 2.150e-13
Identity = 41/128 (32.03%), Postives = 70/128 (54.69%), Query Frame = 1
Query:   43 RIANLVNEMHNKVALYLVRNYDVIMVGRLSKGVMKTKSHRNQ--KLLHASL---KHYQFRQRLLNKANDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVFNCPKCKHSCDRDIHSGRFIWLGYHGL 411
            ++   V+++H K+  YLV+NY ++++G++S   +  K  +N   K  +  L   +HY+FRQRLL++      +     E+ T+K C  CG  N K+  +E F+C  C +   RD++  R I   Y GL
Sbjct:  366 KLKTYVDDVHLKLCSYLVKNYKLVVLGKISVSSIVRKDRQNHLPKSANRDLLCWQHYRFRQRLLHRVRGTDCEAVAQDERYTSKTCGNCGVKNNKLGGKETFHCKSCNYITHRDVNGARNILCKYLGL 493          
BLAST of mRNA_P-littoralis_Contig1300.1.1 vs. uniprot
Match: B5VXV0_LIMMA (Transposase, IS605 OrfB family n=2 Tax=Limnospira TaxID=2596745 RepID=B5VXV0_LIMMA)

HSP 1 Score: 75.9 bits (185), Expect = 2.940e-13
Identity = 47/137 (34.31%), Postives = 71/137 (51.82%), Query Frame = 1
Query:    4 KSKLTKGWRNVSKRIANLVNEMHNKVALYLVRNYDVIMVGRLSKGVMKTKSHRNQKLLHASLK------HYQFRQRLLNKANDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVFNCPKCKHSCDRDIHSGRFIWL 396
            + ++ K    + +RI NLV+++H KVA +LV +Y +I +   +   M  KS R  KL   S+K      HY+F + L+ +A   G  V    E  T+K C  CG I+ K+   +VF CP C ++  RD    R I L
Sbjct:  349 RDQMRKASHRMRERIRNLVDDLHKKVAHFLVNHYKLIFLPTFNSSQMVLKSRR--KLNSKSVKNLLTWSHYRFAKHLMQQAERKGVLVVRCNESYTSKTCPHCGKIHEKLGGSKVFKCPNCGYTAPRDWVGARNIML 483          
BLAST of mRNA_P-littoralis_Contig1300.1.1 vs. uniprot
Match: A0A1V0SEV1_9VIRU (Transposase n=1 Tax=Hokovirus HKV1 TaxID=1977638 RepID=A0A1V0SEV1_9VIRU)

HSP 1 Score: 75.9 bits (185), Expect = 3.150e-13
Identity = 40/132 (30.30%), Postives = 75/132 (56.82%), Query Frame = 1
Query:    4 KSKLTKGWRNVSKRIANLVNEMHNKVALYLVRNYD-VIMVGRLSKGVMKTKSHRNQKLLHASLKHYQFRQRLLNKANDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVFNCPKCKHSCDRDIHSGRFIWL 396
            K KL      + ++I N+V E+HNK++LYL +NY+ +I+    +  +++ K ++  K +     HY+F++ +  K+ ++G ++ IV E+ T++ C  CG ++   K   +  C  CK   DRDI+  R I +
Sbjct:  578 KKKLXXXXXXLEEKIKNMVKEVHNKISLYLCKNYENIILPSFETSKMLRGKLNKKVKTVLQRQSHYKFKEHIKAKSEEYGSQIYIVTEEYTSQSCGICGKLSKNYK-NRIKKCSFCKTKIDRDINGSRNILI 708          
BLAST of mRNA_P-littoralis_Contig1300.1.1 vs. uniprot
Match: A0A1V0SKR3_9VIRU (Transposase n=1 Tax=Klosneuvirus KNV1 TaxID=1977640 RepID=A0A1V0SKR3_9VIRU)

HSP 1 Score: 75.1 bits (183), Expect = 3.970e-13
Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 1
Query:    1 SKSKLTKGWRNVSKRIANLVNEMHNKVALYLVRNYDVIMVGRLSKGVM---------KTKSHRNQ-----KLLHASLKHYQFRQRLLNKANDHGKKVAIVPEQLTTKLCDRCGFINWKMKAEEVFNCPKCKHSCDRDIHSGRFIWL 396
            +K KL    R   + I NLV E+HN+ A YLV+NY  I++       M         K K+  N+     K +   L HY+FRQ L NK  ++G ++ +V E+ T+  C +CG ++ K    E  +C  C +  +RD++  R I L
Sbjct:  204 NKKKLKVKIRLTYRHIKNLVKELHNQTANYLVKNYKKILIPEFKTQEMIKNINLTDNKQKARVNKLDKRVKFVLLMLSHYRFRQHLTNKCVEYGCQIDVVTEEHTSMCCTKCGSLSKKYNGREK-HCDNCGYKINRDVNGARNILL 348          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1300.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4M4_9PHAE5.470e-7494.44Resolvase/invertase-type recombinase catalytic dom... [more]
A0A349JKJ7_9CYAN4.530e-1736.89Transposase n=3 Tax=unclassified Microcoleaceae Ta... [more]
A7RAM2_PBCVA1.300e-1636.43Uncharacterized protein C068R n=1 Tax=Paramecium b... [more]
K9YGA5_HALP74.090e-1436.09Transposase, IS605 OrfB family n=3 Tax=Halothece s... [more]
A0A845YEN4_9CYAN1.570e-1333.33Transposase n=2 Tax=Symploca sp. SIO2G7 TaxID=2607... [more]
UPI001E1D2CBE2.110e-1331.25uncharacterized protein LOC123543738 n=1 Tax=Merce... [more]
UPI001E1DA77B2.150e-1332.03uncharacterized protein LOC123544810 isoform X1 n=... [more]
B5VXV0_LIMMA2.940e-1334.31Transposase, IS605 OrfB family n=2 Tax=Limnospira ... [more]
A0A1V0SEV1_9VIRU3.150e-1330.30Transposase n=1 Tax=Hokovirus HKV1 TaxID=1977638 R... [more]
A0A1V0SKR3_9VIRU3.970e-1332.88Transposase n=1 Tax=Klosneuvirus KNV1 TaxID=197764... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1300contigP-littoralis_Contig1300:2403..2840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog489825.LYNGBM3L_71330
PFAMsHTH_OrfB_IS605,OrfB_IS605,OrfB_Zn_ribbon
Model size438
Max annot lvl1117|Cyanobacteria
KEGG koko:K07496
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.33e-17
EggNOG OGsCOG0675@1|root,COG0675@2|Bacteria,1FZWK@1117|Cyanobacteria,1H7MR@1150|Oscillatoriales
DescriptionPutative transposase DNA-binding domain
Cds size438
COG categoryL
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789593.9240236-CDS-P-littoralis_Contig1300:2402..28401680789593.9240236-CDS-P-littoralis_Contig1300:2402..2840Pylaiella littoralis U1_48CDSP-littoralis_Contig1300 2403..2840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1300.1.1prot_P-littoralis_Contig1300.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1300 2403..2840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1300.1.1

>prot_P-littoralis_Contig1300.1.1 ID=prot_P-littoralis_Contig1300.1.1|Name=mRNA_P-littoralis_Contig1300.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=146bp
SKSKLTKGWRNVSKRIANLVNEMHNKVALYLVRNYDVIMVGRLSKGVMKT
KSHRNQKLLHASLKHYQFRQRLLNKANDHGKKVAIVPEQLTTKLCDRCGF
INWKMKAEEVFNCPKCKHSCDRDIHSGRFIWLGYHGLTWLHNENDF
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mRNA from alignment at P-littoralis_Contig1300:2403..2840-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1300.1.1 ID=mRNA_P-littoralis_Contig1300.1.1|Name=mRNA_P-littoralis_Contig1300.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig1300:2403..2840- (Pylaiella littoralis U1_48)
TCCAAATCAAAATTGACCAAGGGGTGGCGTAACGTATCCAAAAGGATCGC CAACCTGGTCAATGAGATGCACAACAAGGTCGCCCTCTACTTGGTCCGCA ACTACGATGTCATCATGGTCGGTAGACTTTCGAAGGGTGTGATGAAGACG AAATCACACAGAAACCAGAAACTCCTGCATGCTAGTTTGAAACACTATCA GTTCAGACAGAGACTTCTCAACAAGGCGAATGATCACGGGAAGAAAGTTG CGATCGTGCCCGAACAACTGACAACCAAGCTGTGTGATAGATGTGGATTT ATCAACTGGAAAATGAAAGCAGAAGAGGTTTTCAACTGCCCAAAGTGCAA ACACAGTTGTGACAGAGACATCCACAGCGGTAGATTCATTTGGCTGGGAT ACCATGGTCTTACCTGGCTCCATAATGAAAATGATTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1300:2403..2840-

>mRNA_P-littoralis_Contig1300.1.1 ID=mRNA_P-littoralis_Contig1300.1.1|Name=mRNA_P-littoralis_Contig1300.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=438bp|location=Sequence derived from alignment at P-littoralis_Contig1300:2403..2840- (Pylaiella littoralis U1_48)
TCCAAATCAAAATTGACCAAGGGGTGGCGTAACGTATCCAAAAGGATCGC
CAACCTGGTCAATGAGATGCACAACAAGGTCGCCCTCTACTTGGTCCGCA
ACTACGATGTCATCATGGTCGGTAGACTTTCGAAGGGTGTGATGAAGACG
AAATCACACAGAAACCAGAAACTCCTGCATGCTAGTTTGAAACACTATCA
GTTCAGACAGAGACTTCTCAACAAGGCGAATGATCACGGGAAGAAAGTTG
CGATCGTGCCCGAACAACTGACAACCAAGCTGTGTGATAGATGTGGATTT
ATCAACTGGAAAATGAAAGCAGAAGAGGTTTTCAACTGCCCAAAGTGCAA
ACACAGTTGTGACAGAGACATCCACAGCGGTAGATTCATTTGGCTGGGAT
ACCATGGTCTTACCTGGCTCCATAATGAAAATGATTTT
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