mRNA_P-littoralis_Contig130.123.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig130.123.1
Unique NamemRNA_P-littoralis_Contig130.123.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig130.123.1 vs. uniprot
Match: D7FSB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB1_ECTSI)

HSP 1 Score: 306 bits (784), Expect = 1.650e-99
Identity = 160/199 (80.40%), Postives = 172/199 (86.43%), Query Frame = 1 
Query:  139 MPVGENNFDRLTKSALKWRPESAERTAWAQVFFSLLTQASSLAAFPSYNVVLGFWGLYSVYTKSLQSTQVYLALLFFSILLDIIFCSIWGNNDAGIFDGLTTRFCLVMLILNMVAKVAAVYCFSRLYKEMESAAIQPQESLSAGQKQGGLQAAGGGGLGGAYNMEPVSKNEETAPIKSPDASVFSAGSAASFGLSPKAR 735
            MPVGENNFDRL KSAL+WRPESAERTAW QVFFSLLTQASSLAAFPSYNVVLG WGLYSVYTKSLQSTQVYL LL FSILLDIIFCSIWG+NDAGIFDG T  FCLVMLILNM+AK+AAVYCF R YKEMES AI+PQE L A  KQGG Q+AGG G   AY+M P+S +EE AP+ SPDAS+ S+GSAASF LSPK R
Sbjct:    1 MPVGENNFDRLAKSALRWRPESAERTAWMQVFFSLLTQASSLAAFPSYNVVLGLWGLYSVYTKSLQSTQVYLGLLCFSILLDIIFCSIWGSNDAGIFDGSTASFCLVMLILNMLAKLAAVYCFLRFYKEMESGAIRPQERLGAPAKQGGRQSAGGRG---AYDMAPMSTHEERAPVGSPDASLMSSGSAASFALSPKGR 196
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BLAST of mRNA_P-littoralis_Contig130.123.1 vs. uniprot
Match: A0A835YRK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK6_9STRA)

HSP 1 Score: 150 bits (378), Expect = 1.460e-38
Identity = 79/160 (49.38%), Postives = 102/160 (63.75%), Query Frame = 1 
Query:  139 MPVGENNFDRLTKSALKWRPESAERTAWAQVFFSLLTQASSLAAFPSYNVVLGFWGLYSVYTKSLQSTQVYLALLFFSILLDIIFCSIWGNNDAGIFDGLTTRFCLVMLILNMVAKVAAVYCFSRLYK----EMESAAIQPQE-------SLSAGQKQGG 585
            M  G N+F+R+ K  L W PE  ER+AW QVF S+LTQ    A+FPSYNVVLGFWGLY  +T+S Q+   YL  L  SILLDII+CS+WG+N A +FDG T  FCLVMLI NM  K  ++  F +L+K    E+   A++P         +L   +K+GG
Sbjct:    1 MAPGVNHFNRIRKELLTWHPEYVERSAWIQVFLSILTQLGGEASFPSYNVVLGFWGLYVAFTRSFQACNCYLWFLAASILLDIIYCSVWGSNKAKVFDGPTAIFCLVMLIFNMGVKAVSLLYFKQLHKTLVAELTDRALRPANRRASINLALKQARKEGG 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSB1_ECTSI1.650e-9980.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YRK6_9STRA1.460e-3849.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig130contigP-littoralis_Contig130:495355..500044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1469
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_004850.1
Cds size606
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig130.123.1prot_P-littoralis_Contig130.123.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig130 496080..499906 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789593.6586702-UTR-P-littoralis_Contig130:495354..4960791680789593.6586702-UTR-P-littoralis_Contig130:495354..496079Pylaiella littoralis U1_48UTRP-littoralis_Contig130 495355..496079 -
1680789593.7347486-UTR-P-littoralis_Contig130:499906..5000441680789593.7347486-UTR-P-littoralis_Contig130:499906..500044Pylaiella littoralis U1_48UTRP-littoralis_Contig130 499907..500044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789593.6702547-CDS-P-littoralis_Contig130:496079..4961441680789593.6702547-CDS-P-littoralis_Contig130:496079..496144Pylaiella littoralis U1_48CDSP-littoralis_Contig130 496080..496144 -
1680789593.6800506-CDS-P-littoralis_Contig130:496704..4969731680789593.6800506-CDS-P-littoralis_Contig130:496704..496973Pylaiella littoralis U1_48CDSP-littoralis_Contig130 496705..496973 -
1680789593.6912782-CDS-P-littoralis_Contig130:497668..4977311680789593.6912782-CDS-P-littoralis_Contig130:497668..497731Pylaiella littoralis U1_48CDSP-littoralis_Contig130 497669..497731 -
1680789593.7120247-CDS-P-littoralis_Contig130:499442..4995321680789593.7120247-CDS-P-littoralis_Contig130:499442..499532Pylaiella littoralis U1_48CDSP-littoralis_Contig130 499443..499532 -
1680789593.7251375-CDS-P-littoralis_Contig130:499787..4999061680789593.7251375-CDS-P-littoralis_Contig130:499787..499906Pylaiella littoralis U1_48CDSP-littoralis_Contig130 499788..499906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig130.123.1

>prot_P-littoralis_Contig130.123.1 ID=prot_P-littoralis_Contig130.123.1|Name=mRNA_P-littoralis_Contig130.123.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=202bp
MPVGENNFDRLTKSALKWRPESAERTAWAQVFFSLLTQASSLAAFPSYNV
VLGFWGLYSVYTKSLQSTQVYLALLFFSILLDIIFCSIWGNNDAGIFDGL
TTRFCLVMLILNMVAKVAAVYCFSRLYKEMESAAIQPQESLSAGQKQGGL
QAAGGGGLGGAYNMEPVSKNEETAPIKSPDASVFSAGSAASFGLSPKART
G*
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mRNA from alignment at P-littoralis_Contig130:495355..500044-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig130.123.1 ID=mRNA_P-littoralis_Contig130.123.1|Name=mRNA_P-littoralis_Contig130.123.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4690bp|location=Sequence derived from alignment at P-littoralis_Contig130:495355..500044- (Pylaiella littoralis U1_48)
AGGAAGGACACAAGCTCTGCTGTCAACTACCAGCACACAGCATAAATATA
ACTACAGCAGCAGCACTTCACAAACGGCGGGCGTTTCTCTGCTGTAGTGA
CTTTTAGCGCGCGAAACCCGTCACTAGAGGGTGTAAAGATGCCTGTCGGA
GAAAACAACTTCGACCGACTTACGAAGAGCGCTCTAAAATGGCGTCCGGA
AAGCGCCGAGCGTACGGCGTGGGCACAAGTATTTTTCTCTCTCCTCACCC
AAGCCAGGTGTGTTGACTCCGAACTCGACATTCTCAGCTGTGTCAATATG
CAGTCAGTAGCCTGGCATACACGAGCAGGAATGGACCGGTTCGCTTTCTT
CGAGTGCCAACCACCGACTGAAATACCCCGTTGTGAGAACCTTCAACATT
TGCACGAACTACGTGTTATCTTGAAATCCCTATTTTCAGACAGCAAGCAT
GTACGGTGCTGTAGTCGATAATGCCAACTCTACCATCCCTCCCACACGCC
GTTCGTATGCAGCTCACTGGCAGCGTTCCCGTCGTACAACGTGGTGCTTG
GGTTTTGGGGCCTGTACAGCGTGTATACCAAGAGCCTGCAATCAACGCAA
GTGTAAGTGTTGTTGTGTTTGCAGAATACCTGCTGAACGCGTATTACATC
GCCTGTACTATTTACTGCTTTGTTGTCGTCGCTTCAAACCGAGCGACTTG
TACTGGCCAGTGTTCCACGTAGCATGTGTGTGTGTGTGTGTGTTGTTATC
TCACATTTTCCGACGCAGACTTCACCTTTCACGTATAAGTTGGGCGCACC
AGCCGGGGGTCACACAGGAGGAAGGTCCGAAGATGTTTTTTTTTCCCGGT
ACACGTACGAGTAGCTAACTTTTTTCTATTTTCGAGTAACTTTTTTCTAT
TTTCGAGTGCTAAACACCTACGTACCACAAATGGATCAATAGTATAGTAG
GAGTATTCTAACCCCGGCGTGGATTAAAATTGATCAGTGTTGGTCAACAA
TCACCTGCTTTGTATCAGTTCGTGTGTGTGTTTTCGTCCCATATATTCTG
GGCACCAGTCTACACCTTTCGGTATAATAAGGTGGGCGCACCAGCCGGGG
TCATACAAGACATTTTTGTTTTTCTCTCCACCCACCTTCTGCGGTGCTTG
CCTTTTTAATTTTTAGCCTTTCGACTTTTTGTCGCGGGAAGGGTTCAACC
GTTCTTTACCCTCGTCAACTGCTACGTCGAATTCGATTGTTTGTCATGTA
GCGGTTGACAAAAATCCGTGACAATACCGTCCACGTACAAAAAAAGCTAC
ACGTACTGTACATGTCATACGTCGAAGCAATTTACATGCCACGCGCTAAG
AAAGACCGCTATCTACCCATGGTTACTCCCATGACACATGAGTATTGATG
GGAAATCGGAAACGTCGGCCCACTGCTCAAGAATATGTCATGAAACATAT
GATTGATATTATTGTCAATAAGTATTGATGCATGTTGACCATTTGCCATC
GCTACAAGTATTTAGCATCTGGAATCGACGGGAGGAACCTACTGTACTGA
GACTGAACTACTATTGAGAAAAAAAGTATTGAATCCATCATGGCTATCGA
TCAGTATTGATGTCACTTCTGTTGATGCACCATTGATCAATGTTGATCAG
TTGTAATCGATAATGCAAGCGATTGCCTCTTGATCGATTATTCGAAATGG
CAAATGATGTCCCGTCTTCTCGAAGAAGGTAAGATTTGTTCTTGTGTGCG
CATACGTACGTGGTCGGATTTATATCCATGACGGTTTCATGTTTCCTTAG
AAGCAGCGATTTATGCGGACACCCTTTGGATTATTCACTGCTGTGCCCCA
AACACACGTCAACCTGCTGTTTCTTATTCTGGAACCTAGTACAAAACCAT
AGACAACGATACTCTCGGGTCGCTGTCGTAAATACGATCACACCCGGCGT
ATAACCCGGCTCTGAGGGTACGAACAGCCCCGAGGGTACGAACAAGATGC
GCGCCGATTTTTAGTGGCGCGTTAAGGTCGCAGTACATAGTCTCACCATC
GTGGGGCGTTCTGTGTGGCCCATGCATGATTGTCAAGGCTGACGTCGGTC
AGGGCCGAGTTGGCCTAATGGACAAGATAGCTGCAGCGCTGCCTGCACGT
TGCATTTGAATGTAGCCTCGATATAGCCTCTACTGAACAACTGGATATTT
GCGTTATTTGTGTTAACGTTGTATTCAACACGCCCTGGCGTTGTAACATG
ACTCCATCAATACGCGCTCCCGTTTACGTTCGTTCCATCCTTGTCCCGTC
GACGTGCCCGCAGATATTTGGCCCTGCTTTTCTTCTCCATTCTCTTGGAT
ATTATCTTCTGCTCTATTTGGGGTAAGTGCGCAGTCAATAAAATGCGCGA
AATAGGACACTTTCTGTTTTTTTGGCATTGGGTACCTTCACAAATTGCCG
GGCATTGCCTTGTGAATATGGCATGGCCGTGTCGTCTCTCCGTCATGTAA
TAGCACCCACTTATTTAAGCACCCCTATATCTTCCAACTGATCGTTCATG
ATAGTAGCAAAATTTCAACGTTAGCGAGGGTGATGACGAAAGCGAATCGA
GCAATTCACAAAACCGTACGTACGTGCACTTTTGTCCTGGACACACACCT
TGTGTGCTTCCTGGCCTCCATCGGGGGAATGAGACGTCACTAGCAAATTA
TTTGTCTTCAGCATAAACAGGACGAGCCCGACATTCCTTTTTTTTGGAGA
GAAATACCAGCCCTGACCAACTGATCGGTGAACTGATTACTTTCAGGAGG
CTCATCAGCGTCTGTTGAAGCCGACTGCGTCTATCTTCTACCAGAATTTC
CATGGCACACCTCATCCGACGCACCGCTTGCAGAGCCTACCGCACAACTC
CTTAGGCATACCACGCAACGGTTAGAGTAGCGCATACATATGAGAGTTTG
TTTATCGATATCCACAAAATAAAGCATTTTCCTGAATTATCTCTGGCTGG
CTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGAGTCTCTCCCTCCCTCACT
CTCCCTTTCTCTCTCAGGCAGTAACGATGCCGGTATCTTCGATGGATTGA
CCACGAGGTTCTGCCTCGTCATGCTCATCCTCAACATGGTGGCAAAGGTT
GCGGCAGTCTACTGTTTCTCGAGATTGTACAAAGAGATGGAGTCTGCAGC
GATCCAGCCCCAAGAGAGCTTGAGCGCTGGCCAAAAGCAAGGAGGGCTCC
AGGCGGCGGGGGGAGGGGGGCTGGGGGGCGCGTATAATATGGAACCGGTA
TCGAAGAACGAAGAAACGGCTCCCATTAAATCACCCGACGGTAAGAGAGA
GGGCTGGACTCAGAAAATCGCAAGAAGCGCAGCTGTTGAGTAAGCCGACG
TGCGCCGCGTTCCGAGTGCACGTGGGGAAGTGGCGATGGAACTGAGCGTT
CAACGGTAAAATAGAGCGCGTACGTCACGGTGCGGTTGGTGATCCAACGT
GGCTTCGGTCCAAGTTGGTTGAGTACCCTGTTTCCGTTGAGTTTTTACTT
TTTGGTATGGCTGCGCACGTGCACCCCAGCGCCCACGAGTGGTTGCTCCA
CATGTTTATGCTGCCGTTCCGACGCCGCCCTCTTGACCGGTCAAATAGGA
TTCTACCCGCAATCTACCTGTTTCTGTATGGTTTGGTCCCACACACTGAG
TCGAAGTAGCACCATGGCCAATCAACATAATCTTCAAGAATGTTTCGATT
CATACCGCTCCAGAGTATAACGCTCAAGTCGGAGAAAACGAGCTACGTAG
AGTGCCTCCTATAGTCCTTCCACGCCATTCACCTGACGCGTGTGTGTCGT
TACCGTCCGCATTCAACCGTCTGGCCGTTACCGTAACCGATCGCTTCCAG
CGAGCGTTTTCAGTGCTGGCAGCGCGGCATCTTTCGGCCTTTCTCCAAAA
GCAAGAACTGGCTGAGCGGCGCACCGTGGGGGTGGTAAATACTGCTGCTG
CCGCAGTTTCTTGTTTTTCGGTTACTGGCGATGTAGAGAGGTACAAGTTG
AATGTATACTTCGTAGGGGGAAGGCTGAAGGTGCAGTTGGTGAAATGTTT
AGGGTGCGGGTACCTCCGACACGAAAATACTTTAAAAAAGGGATCGTCTT
ACTACAAACACACCCACATGTGGTTCCCCTCACCACGCTCTTGTACAGAA
AAATCTGAAATTCCGAAAAGGTACGTAGTACACAGTGGGAGTTGCTGCCT
ATAACCCAACGATCTGGGGTATGACTCAAAATGAAGATCGAGCTGGTAAA
GGCTGCTCGCTCTGTTCTTTGTTTCGATTCGATTTTACATTCGACATTTA
CGTGTTGTGATTGTCGTATCTGTGCCGTGTTGTTGTCGGTTTTCGATGTT
TTTCTCAAGGATAGTTTAAGCGTTCGTCTTGCCCATATTTTCATGCCGTA
GGATTTTCTGTGGCGATAGGAGAGTCGAAGGAGATTACACATGTTTATGT
AACGTGCGACAGAACGCATTTAGTTTCGGGTATGTATCTAGCGAAAAACA
TTTTTTAGGAGAAGTAGACCCCTTTCTCAGCCAAAGGATACCTCCTACCT
TCCGGGAGCCAGAAGGGCGAATGAAGTTCTCCGTGAACAGGCTGGCCGTA
TGGAGTCGCGGAACAGGAGGGCCCCGAGATTCATTTTCAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig130:495355..500044-

>mRNA_P-littoralis_Contig130.123.1 ID=mRNA_P-littoralis_Contig130.123.1|Name=mRNA_P-littoralis_Contig130.123.1|organism=Pylaiella littoralis U1_48|type=CDS|length=606bp|location=Sequence derived from alignment at P-littoralis_Contig130:495355..500044- (Pylaiella littoralis U1_48)
ATGCCTGTCGGAGAAAACAACTTCGACCGACTTACGAAGAGCGCTCTAAA
ATGGCGTCCGGAAAGCGCCGAGCGTACGGCGTGGGCACAAGTATTTTTCT
CTCTCCTCACCCAAGCCAGCTCACTGGCAGCGTTCCCGTCGTACAACGTG
GTGCTTGGGTTTTGGGGCCTGTACAGCGTGTATACCAAGAGCCTGCAATC
AACGCAAGTATATTTGGCCCTGCTTTTCTTCTCCATTCTCTTGGATATTA
TCTTCTGCTCTATTTGGGGTAATAACGATGCCGGTATCTTCGATGGATTG
ACCACGAGGTTCTGCCTCGTCATGCTCATCCTCAACATGGTGGCAAAGGT
TGCGGCAGTCTACTGTTTCTCGAGATTGTACAAAGAGATGGAGTCTGCAG
CGATCCAGCCCCAAGAGAGCTTGAGCGCTGGCCAAAAGCAAGGAGGGCTC
CAGGCGGCGGGGGGAGGGGGGCTGGGGGGCGCGTATAATATGGAACCGGT
ATCGAAGAACGAAGAAACGGCTCCCATTAAATCACCCGACGCGAGCGTTT
TCAGTGCTGGCAGCGCGGCATCTTTCGGCCTTTCTCCAAAAGCAAGAACT
GGCTGA
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