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Homology
BLAST of mRNA_P-littoralis_Contig130.113.4 vs. uniprot
Match: A0A6H5KM79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM79_9PHAE) HSP 1 Score: 541 bits (1394), Expect = 3.630e-182 Identity = 296/462 (64.07%), Postives = 339/462 (73.38%), Query Frame = 3
Query: 453 GPKGLTSLSISRNDSLSPAAYSTESGERAIKETVPAAFVNTLESRYLSPSTRCLTPDHERAAKGLHSPGPGTYYPSFEAWDFAPPYEWNRVNKAEKACRNSKTRTYNTKLPWGEPTMPRSPHPARAAEMPTEEERAWLSKRRGSIRPSTAPRCIWVSGVSTRGGLQAWGDIATKTGPIHVGRKGDCSHPWDRPTPRRGPDSQRRGPVHSCEARATSPGFREVRHLNHDLTRQTAGAAMETPGPGQYNIRPPLQRGTSFAGPRPATACSANRNNLLARTVGLFEASAKLSVAS-ARAGETERGSAAGRRRACRPSPPAARSQRLSAPLMGRESPGPAYKLPSDFDQKLVNKKTFHPPRCDGGKTKSSRSTDKPRKKGGNANSGSAHEP---AREGRAEGLPRARRELSNF-LAQSGGCGAVGRALAVPVSTSMGRGFLLRIRADNMVFVRLPWGVLYTAEFLT 1823
G GLTSLS N +SPA Y+T+ GERA+KE PAA VNTLESRYLSPSTRCLTP HER AKG SPGP YYP EAWDF PP WNRVNK++K R +R++N K+ WGE TMPR P+P +AA++PT+EERAWLSKRRG+ RPSTAPRC+W++GV+TRGGLQAWGD+AT TGPIHVG KG+C+ PWDRPTPRRGPDSQRRGP+HS E RATSPGFRE R+LN DLTR+ A A +TPGPGQY+IRPPL+RGTSFAGPR T CS A TV ASAK AS + + G G R RPS A SQRLS PL GRESPGPAY LPSDFDQK VNKKTFHPPRC G S T++PR G +AN + R + + LP+ARRE S+ +A+SG A+GRAL VPV+T MGRG LLRIRAD M FVRLPWGVLYT E LT
Sbjct: 107 GTAGLTSLSAG-NAFVSPATYTTQPGERAVKEKAPAAVVNTLESRYLSPSTRCLTPSHEREAKGAQSPGPAVYYPH-EAWDFGPPKHWNRVNKSDKPGRMPSSRSFNAKVTWGEATMPRPPNPVKAAQIPTKEERAWLSKRRGTARPSTAPRCMWLNGVNTRGGLQAWGDVATNTGPIHVGNKGNCASPWDRPTPRRGPDSQRRGPIHSREVRATSPGFRETRYLNRDLTRKGACKATDTPGPGQYSIRPPLERGTSFAGPRRPTKCSK------AATVNAMVASAKGRAASYEKTSGAKNGMVRGGDRQSRPS--TAPSQRLSIPLKGRESPGPAYALPSDFDQKFVNKKTFHPPRCTG---TSPFGTEEPRGTGRSANLAPRADEDGHVRAKQTKRLPKARREASSGPVAKSGRVDAIGRALGVPVNTCMGRGILLRIRADGMTFVRLPWGVLYTTEVLT 555
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2166 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-20_004790.1 |
| Cds size | 1767 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789593.1454904-UTR-P-littoralis_Contig130:463224..463390 | 1680789593.1454904-UTR-P-littoralis_Contig130:463224..463390 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig130 463225..463390 - |
| 1680789593.2182796-UTR-P-littoralis_Contig130:468306..468539 | 1680789593.2182796-UTR-P-littoralis_Contig130:468306..468539 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig130 468307..468539 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789593.1601284-CDS-P-littoralis_Contig130:463390..464474 | 1680789593.1601284-CDS-P-littoralis_Contig130:463390..464474 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig130 463391..464474 - |
| 1680789593.1789348-CDS-P-littoralis_Contig130:464858..465223 | 1680789593.1789348-CDS-P-littoralis_Contig130:464858..465223 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig130 464859..465223 - |
| 1680789593.1962206-CDS-P-littoralis_Contig130:465509..465599 | 1680789593.1962206-CDS-P-littoralis_Contig130:465509..465599 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig130 465510..465599 - |
| 1680789593.2077186-CDS-P-littoralis_Contig130:468078..468306 | 1680789593.2077186-CDS-P-littoralis_Contig130:468078..468306 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig130 468079..468306 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig130.113.4 >prot_P-littoralis_Contig130.113.4 ID=prot_P-littoralis_Contig130.113.4|Name=mRNA_P-littoralis_Contig130.113.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=589bp
MVLFGAYNTAERFVDDDRLAAHFPGPGSYPFKSVVEGAPVPRYAKKLVED GVVRPDGSAIVFRERDGWVRGVEGPKGLTSLSISRNDSLSPAAYSTESGE RAIKETVPAAFVNTLESRYLSPSTRCLTPDHERAAKGLHSPGPGTYYPSF EAWDFAPPYEWNRVNKAEKACRNSKTRTYNTKLPWGEPTMPRSPHPARAA EMPTEEERAWLSKRRGSIRPSTAPRCIWVSGVSTRGGLQAWGDIATKTGP IHVGRKGDCSHPWDRPTPRRGPDSQRRGPVHSCEARATSPGFREVRHLNH DLTRQTAGAAMETPGPGQYNIRPPLQRGTSFAGPRPATACSANRNNLLAR TVGLFEASAKLSVASARAGETERGSAAGRRRACRPSPPAARSQRLSAPLM GRESPGPAYKLPSDFDQKLVNKKTFHPPRCDGGKTKSSRSTDKPRKKGGN ANSGSAHEPAREGRAEGLPRARRELSNFLAQSGGCGAVGRALAVPVSTSM GRGFLLRIRADNMVFVRLPWGVLYTAEFLTRVHVVSGRASVSSIDPDVPN SDSGGMGHVAEDSVASTKKEGRRHEDVQFTLDSPADKA* back to topmRNA from alignment at P-littoralis_Contig130:463225..468539- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig130.113.4 ID=mRNA_P-littoralis_Contig130.113.4|Name=mRNA_P-littoralis_Contig130.113.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=5315bp|location=Sequence derived from alignment at P-littoralis_Contig130:463225..468539- (Pylaiella littoralis U1_48) GGAAAGTTTACAAACTCTGTTGTTTGTGCACACGAGGTAGGGACTCTACC
TCTACGACGGTGACACGTTTGTAGCCTCTTGAGCCATCGAGGGCTTCGCG
CATGACGAGTGGGAGTGGTGGTGCGGTGATGAGGCCTACTTGGACGGGCC
ATATAGAGCGCCCGACCCTTCGAGTTCCCAGAAGCATCTTGATGTTCTGA
GGGTACTATACCGCCGCGTAGACAAACCGCAACATGGTGTTGTTCGGGGC
TTACAACACAGCAGAGCGGTTCGTCGATGACGATAGACTAGCCGCGCATT
TTCCTGGGCCTGGTTCGTACCCATTCAAGTCTGTTGTCGAAGGGGCTCCC
GTTCCACGATATGCAAAAAAACTCGTGGAGGATGGCGTCGTCAGGCCGGA
TGGAAGCGCGATAGTATTCAGAGAACGAGACGGCTGGGTCAGGGGGGTAG
AAGGTCCGAAGGTGAAGCAGCAGCGGCAGCAGCAGCGAAAGTAGCAGCAA
CGAAAGTTTAAAATAGCCAGCGATTTATGCAGCAGCTGGTCGGTTGAAGT
TTTCGCATGTTTTGTGGTGTCAACGGTATTTTGTTTGTTCGTAATTCTTG
AACGAATAAAGCCACAGCGATGACAGAGCCATCCTCCGTGAGCTGCTTGT
ATGATCCTCCTCGTGTGATGATCGTTTGGGCTCTCAAGGCGTCGGTAGGC
TCACAAAAAAGCAGGGATCATCTCGGTATCGATTTTTGAGGTTGGTAACA
AATTCCGTGGTAATCACCCTCCACGGTATCGAACAGTACGGTAATCTACG
GAATCGACCACCGTGGTAATGCCGTCGTACTCGACCCTTGCTTCAATGTA
GATATCGTGCTTCGAAGTACAAGTATGGCACTGTTCGGAAACGGATGGTA
ATTCCCAAATCTCACGGTATTCTACCAATTGCCAATTACCGCGGTTACGG
TATTTTACCGCGGTAAAATTACCGAGAGACCCCCTGAAAAAAAGTGGTCA
TGTACTACACATGCGAAAACAGAGGCAAATAAGATAAAAAGACCTGCCGC
TGCTCCGCGCAGCAAGTCTTGCTCAGCTTGGCACCGGTTTGCTTTTTCGT
TGACCACGCTCGAGCGAATCGAGTCACGCCAATGGCGAAGACATCTGCTG
CGAGTTGTGCGTATGTCCCTTTTCGTGTGGTGCTCGTTTGGGGCCGCAAG
GCATAAACGTGCTCGCAAAAAAAATACTATTGGCACAATATTGTGAAAAC
ACAGAGAGAGGGAAAGTTGCACAGCAGCACAGACCGGAAAAAAAGATATT
TTCGTCTATTCTTTATTTTTTTCACATGCGGCTGCCGCGAGCAATTTGTT
TGCGGACGTGCCGATTTAAATCTAAACCGAAAGATCACCACACGAGGAGG
ACCATACACAGAGCTCGCGGCACATACTCCTTGTCGTTGATGTGTCTCCA
TCCGTTCGAGAGTGGTCAACGCCAAGCCGAAGAAGACCTGCTGCACGGAG
CAGCGGCAGGTCTTTTTTGTCTTGTTTTCGCGTGTTTTTGACGTCATCAG
CTATTTTTACGAACCTACCGTCGCCTTGAGTGCTCAGACGATCCCCACAT
GAGAAGGATCATACACACAGCTCACGGAGGATGGCTTCGTCATTGCCGTG
GCTTCATTCGTCGGAAAGTTATGAGCGAAAATGCAAGCTGATCTCAGCGC
AACAAAACTACCCTACTGCTGCTGCTGTACGTGCAGTCTTCAGGGACCGG
CTCCACAACCAATCTCCTACATATTTTTACAGAAATCAATCAGCATTAGA
ACGGCGGACCAAAAGTTGCTAGCAATCAAAAACTGGTTCGGAAACGAGTA
ATTTTCGACAGGAACTCTCAACTGTACAAGAACCCTGATATGAGCTAAGT
TCGCGTCCAGTCCTTTTGTCCACCGAGGACGCGGAGAACGGCGGCGTCGC
GCTCAACTTTCCATCAAATCTCCTGGTTTCGTGCAGTTTCTGCCTGCTGC
ATACGTCTATAAACAATTGACAGGTTCACACGAATTCCTCTAGAATCGTC
TCTGACTACCTGCTGCTGCTGCTGCTGCTGCCAGGGCAGTCGACGCCACT
AACACACCACATCGGTAGGCTGTGGCAATTTCGTTGGGTGTGGTTGCTTG
TAACGAGCTTGCGCTGTCCGCAACTGAAGCAGGATTGTATGAGTTGATCC
GCTTTTTTTCACGCCAACTTGTATGCCAGAAGATGGTTCTCAAAACCATA
TGTTTTGCACCTCCGTCTTGTGCTTCAAGGCCTCTACCGAGAAGCCGCCG
AGATGGTATCCATAGCGGAGGTCAAGCTGCTGCGATTGCAGTACAGTATC
TCGATACGTTTACTTTCGCTCTATTGAGGTTCCAATGGAAGAGGGTGGGA
CATGGAGCGTACAGCAGTCAGGGGGGGCATCGCCAAGGATTCTTGATCTA
GAAGTTTTGACGTCTGGGAGAAAAACAACTATGCCGTTTCAGCCGAAAAT
ATCACCACGGAGCCTCGGGATGTGTACCGGAAACTGCTCCCGCTCAGCGT
TGCCTTTACATACCTATATATTAGATTTTGCACAGTGATGTTGAGCAGCC
TGCATCAAGCTATGATGTGCGCTTTGAGTAGAAATGGAGTTTGCCTAGTA
CAGCGCGGCGTCGTCTACATTACGGACCACGATGTAGCCCAACATGCTGA
TAACCTTACGCAGTCATGCAGTGGACACTCTATAGCTCTAGAATAGTTTT
GCCACCAGGGCGATATCATTTGATCCTTAACTGACGTAAGGTCTTCACAG
CGTCCCGTCAAGTCCTGCCTATCTTCGTGGGCAGACCCTGTGATGTCGGT
TATTTGATGCCTGGGTGCAACGCAGAAAGCGTAACTCCATATCATCACCC
TCCGCGTGTCTCTTCGCACTCGTTCATGTTACGCGAGCAGGGTCTTACGA
GCTTATCTATCAGCAGAAATGACTCCCTTAGTCCGGCGGCATATTCTACG
GAGTCTGGCGAGCGTGCCATCAAAGAAACAGTGAGTGAGCGGGGGAGGCG
CTTGGGCCCTCGCCTACACTGCACATGAGAGCAAACGAGAAATAAATGTG
GTACTGCGCTGCATAGGTTCACTTGACGTTCTCCGATGTGAGAGGCCGAG
AAGTATAATGTTTGGCACTGGTGTTGGCGCCAAGAAAGAGCTGTCACTGG
TCGTCTGCGACACTTCCACGGCGTACATTGAACGTTATGCAATCTAGGAA
TAATACATTTGGTTCGTATATACTGTGCAAATATCCATACTGTTTACGGC
CCTACTTGCCATTCAGGTACCTGCCGCCTTCGTCAACACCCTCGAGTCTC
GCTACCTCAGCCCCTCGACGCGATGCCTCACGCCAGACCACGAGCGAGCT
GCGAAAGGACTGCACAGTCCCGGCCCGGGCACGTACTACCCTTCCTTTGA
GGCGTGGGACTTCGCACCGCCTTACGAGTGGAACCGAGTGAACAAGGCTG
AGAAAGCTTGCCGGAATTCGAAAACCAGGACATACAACACCAAGTTGCCT
TGGGGCGAACCGACCATGCCGCGCTCGCCTCATCCTGCAAGAGCAGCAGA
GATGCCGACGGAGGAGGAGCGCGCGTGGCTGTCGAAAAGGCGCGGATCGA
TCCGTCCTAGCACGGCCCCGCGATGCATTTGGTGAGGTAGATCCCCAAGG
CAGGCTCTATGAAGATATGTGGTCTGTAGTACTGTACGTGAAATATTTTT
TCTGCACAAAGTTTGGACGAATCTCGTACCGACTCTAGTTTGTGCATGTG
TACGATATCCAACGGGAATTGTCTGAGCTTGGGATTGGTTGCTGAGTAGC
GGCCATTGGCTCATCAGAAACTATTTTTTCTTTAGGTCCCCTGGAGTGGA
CTGCGCCTGTAAGGTGCGTTCAACTTGTTGCGTGGCCGAGCGTAGCTCGA
AACCTCTTGTTTTGCAAGCGGTGATGACGTCTGCAGAAGCCAGTTTTATT
TTGTATCACTCAAAAACCTTCCACAATTAACGCAAACGTACATGTCGCCT
CTGCAACACCGACAGGGTGAGCGGGGTGAGCACGAGGGGCGGGCTGCAAG
CGTGGGGCGACATTGCAACGAAGACGGGCCCAATACACGTGGGTCGCAAG
GGCGACTGTTCACATCCTTGGGATCGACCAACCCCTCGCCGAGGACCCGA
CTCTCAACGCCGAGGCCCTGTTCACTCGTGCGAGGCACGGGCAACGTCAC
CCGGCTTTCGCGAAGTGCGCCACCTAAACCACGACCTCACACGACAAACC
GCAGGTGCCGCCATGGAAACTCCAGGTCCCGGGCAATATAACATTCGCCC
CCCCTTGCAGCGTGGGACGAGCTTCGCTGGTCCCAGGCCCGCGACGGCGT
GCAGCGCCAACAGAAATAATCTTCTGGCAAGGACGGTTGGTTTGTTTGAA
GCGTCCGCCAAACTCAGCGTGGCAAGTGCAAGGGCTGGCGAAACGGAGAG
AGGTTCAGCCGCAGGACGGCGAAGAGCGTGCCGGCCGTCGCCGCCAGCGG
CCCGTTCGCAACGGCTGTCAGCACCGCTCATGGGGAGAGAGAGCCCGGGC
CCGGCGTACAAGCTACCGAGCGATTTCGACCAAAAGCTGGTCAACAAGAA
AACGTTCCACCCCCCACGTTGTGACGGAGGAAAGACGAAATCATCACGTA
GTACGGATAAGCCAAGAAAAAAGGGGGGAAACGCGAATTCTGGATCAGCC
CACGAGCCCGCCCGAGAAGGGAGAGCCGAGGGACTGCCGCGAGCTCGACG
GGAGCTATCTAACTTTTTAGCGCAGTCGGGGGGCTGTGGTGCTGTTGGCA
GGGCATTGGCAGTGCCGGTCAGCACATCTATGGGGAGGGGGTTTCTCTTG
CGGATTCGCGCCGACAATATGGTCTTCGTGCGTCTGCCCTGGGGCGTTCT
GTATACCGCGGAGTTTCTGACCCGAGTACATGTCGTTTCCGGTAGGGCGT
CTGTTTCCTCGATTGACCCTGACGTGCCCAACTCGGACAGCGGAGGCATG
GGGCATGTCGCTGAAGACAGTGTGGCATCAACGAAAAAAGAGGGGCGGCG
GCACGAGGACGTGCAGTTCACCCTCGATAGTCCGGCCGATAAAGCATAAA
TGTGGGAATGGGGCAATAGTCGGGTATGTTTACCCGCCGTGGTGAGCCGC
AGCAGACTTGGGTAGCGTCTGTACCACCGATGGTAGATAACACCCGTGCT
TCTCCTGAGCACGGGTAACGGAGAATGATATTTCCGAGTTTTGTTTCGCA
CCGCATGCATTTGTA back to topCoding sequence (CDS) from alignment at P-littoralis_Contig130:463225..468539- >mRNA_P-littoralis_Contig130.113.4 ID=mRNA_P-littoralis_Contig130.113.4|Name=mRNA_P-littoralis_Contig130.113.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1767bp|location=Sequence derived from alignment at P-littoralis_Contig130:463225..468539- (Pylaiella littoralis U1_48) ATGGTGTTGTTCGGGGCTTACAACACAGCAGAGCGGTTCGTCGATGACGA TAGACTAGCCGCGCATTTTCCTGGGCCTGGTTCGTACCCATTCAAGTCTG TTGTCGAAGGGGCTCCCGTTCCACGATATGCAAAAAAACTCGTGGAGGAT GGCGTCGTCAGGCCGGATGGAAGCGCGATAGTATTCAGAGAACGAGACGG CTGGGTCAGGGGGGTAGAAGGTCCGAAGGGTCTTACGAGCTTATCTATCA GCAGAAATGACTCCCTTAGTCCGGCGGCATATTCTACGGAGTCTGGCGAG CGTGCCATCAAAGAAACAGTACCTGCCGCCTTCGTCAACACCCTCGAGTC TCGCTACCTCAGCCCCTCGACGCGATGCCTCACGCCAGACCACGAGCGAG CTGCGAAAGGACTGCACAGTCCCGGCCCGGGCACGTACTACCCTTCCTTT GAGGCGTGGGACTTCGCACCGCCTTACGAGTGGAACCGAGTGAACAAGGC TGAGAAAGCTTGCCGGAATTCGAAAACCAGGACATACAACACCAAGTTGC CTTGGGGCGAACCGACCATGCCGCGCTCGCCTCATCCTGCAAGAGCAGCA GAGATGCCGACGGAGGAGGAGCGCGCGTGGCTGTCGAAAAGGCGCGGATC GATCCGTCCTAGCACGGCCCCGCGATGCATTTGGGTGAGCGGGGTGAGCA CGAGGGGCGGGCTGCAAGCGTGGGGCGACATTGCAACGAAGACGGGCCCA ATACACGTGGGTCGCAAGGGCGACTGTTCACATCCTTGGGATCGACCAAC CCCTCGCCGAGGACCCGACTCTCAACGCCGAGGCCCTGTTCACTCGTGCG AGGCACGGGCAACGTCACCCGGCTTTCGCGAAGTGCGCCACCTAAACCAC GACCTCACACGACAAACCGCAGGTGCCGCCATGGAAACTCCAGGTCCCGG GCAATATAACATTCGCCCCCCCTTGCAGCGTGGGACGAGCTTCGCTGGTC CCAGGCCCGCGACGGCGTGCAGCGCCAACAGAAATAATCTTCTGGCAAGG ACGGTTGGTTTGTTTGAAGCGTCCGCCAAACTCAGCGTGGCAAGTGCAAG GGCTGGCGAAACGGAGAGAGGTTCAGCCGCAGGACGGCGAAGAGCGTGCC GGCCGTCGCCGCCAGCGGCCCGTTCGCAACGGCTGTCAGCACCGCTCATG GGGAGAGAGAGCCCGGGCCCGGCGTACAAGCTACCGAGCGATTTCGACCA AAAGCTGGTCAACAAGAAAACGTTCCACCCCCCACGTTGTGACGGAGGAA AGACGAAATCATCACGTAGTACGGATAAGCCAAGAAAAAAGGGGGGAAAC GCGAATTCTGGATCAGCCCACGAGCCCGCCCGAGAAGGGAGAGCCGAGGG ACTGCCGCGAGCTCGACGGGAGCTATCTAACTTTTTAGCGCAGTCGGGGG GCTGTGGTGCTGTTGGCAGGGCATTGGCAGTGCCGGTCAGCACATCTATG GGGAGGGGGTTTCTCTTGCGGATTCGCGCCGACAATATGGTCTTCGTGCG TCTGCCCTGGGGCGTTCTGTATACCGCGGAGTTTCTGACCCGAGTACATG TCGTTTCCGGTAGGGCGTCTGTTTCCTCGATTGACCCTGACGTGCCCAAC TCGGACAGCGGAGGCATGGGGCATGTCGCTGAAGACAGTGTGGCATCAAC GAAAAAAGAGGGGCGGCGGCACGAGGACGTGCAGTTCACCCTCGATAGTC CGGCCGATAAAGCATAA back to top
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