mRNA_P-littoralis_Contig130.92.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig130.92.1
Unique NamemRNA_P-littoralis_Contig130.92.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig130.92.1 vs. uniprot
Match: D8LC76_ECTSI (Possible CAMK/ Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC76_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 2.330e-38
Identity = 140/354 (39.55%), Postives = 183/354 (51.69%), Query Frame = 1 
Query:   85 AVEDATDEARGERTAPKGQRAHRKSHEDHRSH-YPPEDCLSELPTPIGTVA--QVLVETPTNEEEEERNATAAAPQKRDCADVTRIGDKHENTQESLSSVDPTGPDAQVTTVVGVTVDVAKPLDGTVPHIATSRKGSTVRQTGREIQAAAGYRRRSSYLPGQAVGRARSSRGASVQLALPFFSEEGWPSACNPSS-VDEANASQAGADVQAQASDHTEEDQQWEDYHALNPRRQHSTPNFVSVRSQFGGKRISVELFESGDSDXXXXXXXXXSGEDRGAKKLEAEKAKLAEGPLSWQQSEEGKKRMAQLTKATVRVETPANKLSRKYLKLFAPSNSAHETYRVLATMHRRMNGT 1134
            A  D  DEA+ E     G+ A R + +  RS     ED  SEL  P G  A  QVL E                  +R+C+     G+    TQ    ++ P     Q++           PL+ T    A +R  +    TG   Q A  Y+RR+SY+PGQA+   RS+  ASVQLALP    EG P+  N +S  D        A+ + +  D     Q W++YHAL+P RQHST + V+ R +   +++SVELF  GD D  XXXXXXX                  + PL W QS+EG+  M +LTK TV VE+PA K+SRKYLKLFAPSNSAH+TY+VLA +HRRMNGT
Sbjct:  128 ASRDPADEAKQETATTLGESAQRPAVDHKRSQSLTDEDFFSELSVPTGMAAAGQVLAE------------------RRECSGPRLDGENDHLTQTPAPALPPVDSTTQLSGDA-----TTLPLE-TTRQAAGARAVAAFDPTGIGTQPAVRYQRRASYMPGQAMRPGRSAARASVQLALPPIVTEGEPAPANETSNADAVRTIHEAAESEVEEPDQPMGGQTWKEYHALHPDRQHSTADLVAYR-RTRNRQLSVELFGEGD-DTSXXXXXXXXXXXXXXXXXXXXXXXXLDTPL-WPQSDEGRSMMEKLTKVTVAVESPATKISRKYLKLFAPSNSAHDTYKVLAALHRRMNGT 454
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.92.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC76_ECTSI2.330e-3839.55Possible CAMK/ Leucine rich repeat protein n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig130contigP-littoralis_Contig130:409946..412404 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LC76
PFAMsLRR_1,LRR_8,Pkinase
Model size1135
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.82e-39
EggNOG OGsCOG4886@1|root,2QPYS@2759|Eukaryota
Descriptionprotein serine/threonine kinase activity
Cds size1134
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789592.2352548-CDS-P-littoralis_Contig130:409945..4099991680789592.2352548-CDS-P-littoralis_Contig130:409945..409999Pylaiella littoralis U1_48CDSP-littoralis_Contig130 409946..409999 -
1680789592.2451632-CDS-P-littoralis_Contig130:411324..4124041680789592.2451632-CDS-P-littoralis_Contig130:411324..412404Pylaiella littoralis U1_48CDSP-littoralis_Contig130 411325..412404 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig130.92.1prot_P-littoralis_Contig130.92.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig130 409946..412404 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig130.92.1

>prot_P-littoralis_Contig130.92.1 ID=prot_P-littoralis_Contig130.92.1|Name=mRNA_P-littoralis_Contig130.92.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=378bp
MEVNKQKGERGMEESSKSEEANSDGEGDAVEDATDEARGERTAPKGQRAH
RKSHEDHRSHYPPEDCLSELPTPIGTVAQVLVETPTNEEEEERNATAAAP
QKRDCADVTRIGDKHENTQESLSSVDPTGPDAQVTTVVGVTVDVAKPLDG
TVPHIATSRKGSTVRQTGREIQAAAGYRRRSSYLPGQAVGRARSSRGASV
QLALPFFSEEGWPSACNPSSVDEANASQAGADVQAQASDHTEEDQQWEDY
HALNPRRQHSTPNFVSVRSQFGGKRISVELFESGDSDDSSTSSTSSSGED
RGAKKLEAEKAKLAEGPLSWQQSEEGKKRMAQLTKATVRVETPANKLSRK
YLKLFAPSNSAHETYRVLATMHRRMNGT
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mRNA from alignment at P-littoralis_Contig130:409946..412404-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig130.92.1 ID=mRNA_P-littoralis_Contig130.92.1|Name=mRNA_P-littoralis_Contig130.92.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2459bp|location=Sequence derived from alignment at P-littoralis_Contig130:409946..412404- (Pylaiella littoralis U1_48)
ATGGAGGTGAACAAGCAGAAGGGGGAAAGGGGAATGGAAGAGAGTTCGAA
ATCGGAAGAGGCGAACAGTGATGGCGAGGGGGATGCAGTGGAAGATGCTA
CTGACGAGGCAAGAGGAGAGAGAACAGCACCGAAAGGGCAGCGCGCGCAT
CGCAAGTCTCATGAAGACCATAGGTCGCACTACCCCCCTGAAGATTGTTT
GTCTGAACTGCCAACACCAATAGGAACAGTAGCGCAGGTGCTTGTAGAAA
CTCCAACGAACGAGGAGGAGGAGGAGCGGAATGCAACCGCTGCAGCACCT
CAGAAGCGAGATTGTGCAGACGTGACCAGGATCGGCGATAAGCACGAGAA
CACGCAGGAGTCACTTTCAAGTGTGGATCCTACTGGGCCAGACGCACAAG
TGACTACCGTCGTGGGTGTCACGGTGGATGTCGCCAAACCCTTGGACGGG
ACTGTACCCCATATAGCAACATCAAGGAAGGGCTCAACAGTTAGGCAGAC
GGGAAGAGAAATACAAGCAGCAGCAGGGTATCGGCGACGATCGTCCTATC
TACCAGGGCAAGCGGTGGGGCGAGCGCGTTCATCGAGAGGAGCAAGCGTA
CAGCTAGCGCTTCCGTTTTTTTCGGAGGAAGGATGGCCATCTGCGTGCAA
CCCTTCGAGTGTCGATGAAGCTAACGCCTCCCAAGCAGGCGCTGATGTAC
AAGCACAAGCATCTGACCATACGGAGGAGGATCAGCAGTGGGAGGACTAC
CACGCACTGAATCCAAGGAGGCAGCACAGCACGCCAAACTTTGTTTCAGT
TCGAAGCCAGTTCGGCGGGAAACGGATTTCTGTGGAACTGTTCGAATCGG
GTGATTCTGACGATTCGTCTACTAGCAGCACCAGCAGCTCTGGTGAAGAT
AGAGGTGCGAAAAAGCTGGAAGCAGAGAAGGCCAAACTCGCTGAAGGCCC
CTTGTCGTGGCAGCAAAGCGAAGAGGGTAAAAAGAGGATGGCACAGCTGA
CGAAGGCGACCGTGCGTGTTGAGACCCCTGCCAACAAGTTATCACGCAAG
TACCTCAAGCTCTTTGCTCCCTCCAACTCGGTGAGACTTTGGTTGCGGTT
TTGGGTCGGTAGATGTGCTGCATTTGACAAAAGGGAACACGAATTTTGCC
ACTCAGAGCGTTGCCGCTTTGTCACGAAACATGTACTACCGCAAGGTCTC
TTCACCAAAGCGTATCTACCCCTACCTTTCGCAGTCTTTATCCTCAGTAC
AGAAGTTGATCCTGCTGTGGTGAGTATTTTCACACAGAGAAGCAAGCCCC
CAAGAAAAACTGGCTGGTCTCTAGCACTCCCCCAATCGCGGATTGTTCCT
GCCTACCAAACATAATTTTACGGGCCATGCACGAAACCCCCTTTTCTTGT
TGCGTAGGCATGCGCTGCTCTCCGAAGAAAAATGTGTTTTTATGTACCCA
CAAAATGAGACATTGCACGGAGCCCCCAACCTCACCTCTGCGATGGCATG
TCCAGTCAATCTGCTGTTTCACGGGCTGTGGTGCTGATCCCGAATTCTCC
AAACTTTTATTGGGTAGCATATCCAACAAGCTACAGACCATCTATCTGAG
TTCATCCAATATAGTCAGTTCTACGAATGAGAGCGCATGTCGGGCTTGAT
ACAACGCTAAATATATCCTGATCTTCTGGTGATATTTTCGGAGGTAGACA
CATAATTATTCTTTGCTTAAAGTGAATTTGGCAGTGACGACTACTGGAGT
TTACTCTTGGTTTCAATTGATTTTAGGCTCTTGCCGGCTCATTGTCATCG
CTGTAGTGTTGGTCCCAAGCCATACCAACGATGTTGTAGTTCTATGGCCA
CATGGCTCTGCTGTGGCTGGCCAGGGTTCAGCTGATAAAGGCCATTCTAT
CGATGTACCACTTTGGCGTGAATTTTGTGATGTACCACTTTGGCGTGAAT
TTTGTCGCCGAAGAGCTAAAAATGAGCCCAGTAGGTACAGAAAACGGGCT
TGCTTTCAGTAACTATGGCGCAGCATTCCTGTAGTTTAAAGCACAACCAC
CATTTCATATTAGCGACTGGCGGAGTAGAATGTGACTTTTTAGGCTTCCC
GTTGCTTTCGTAGCAAGCCGCGGTCTGAGCGAGGAGCACCAGCAGTGACG
GCGGTCGTGACCCCAAAAGTATTGGCAGCACAATTTTTGATGAATTTGGG
AGGGGCTCTGAGTGTCGCGGTGGTCACATGATACTCATCACCAACATGTG
TGGATTGAAAAGACTAGTGTGGATTGAGCAACAGAGTGCCAAACCAGCAC
ATGTGCGTACATAGCTCCCACATAGCTCCCACTAGCTCCCACAGGCGGTC
ATACCTCCCGCTATCATACATACCTGTCTGTTTCTCTGTTCTTATTTTAC
ACAAGGCCCACGAGACCTACAGAGTGCTAGCAACCATGCACCGACGAATG
AACGGGACG
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Coding sequence (CDS) from alignment at P-littoralis_Contig130:409946..412404-

>mRNA_P-littoralis_Contig130.92.1 ID=mRNA_P-littoralis_Contig130.92.1|Name=mRNA_P-littoralis_Contig130.92.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1134bp|location=Sequence derived from alignment at P-littoralis_Contig130:409946..412404- (Pylaiella littoralis U1_48)
ATGGAGGTGAACAAGCAGAAGGGGGAAAGGGGAATGGAAGAGAGTTCGAA
ATCGGAAGAGGCGAACAGTGATGGCGAGGGGGATGCAGTGGAAGATGCTA
CTGACGAGGCAAGAGGAGAGAGAACAGCACCGAAAGGGCAGCGCGCGCAT
CGCAAGTCTCATGAAGACCATAGGTCGCACTACCCCCCTGAAGATTGTTT
GTCTGAACTGCCAACACCAATAGGAACAGTAGCGCAGGTGCTTGTAGAAA
CTCCAACGAACGAGGAGGAGGAGGAGCGGAATGCAACCGCTGCAGCACCT
CAGAAGCGAGATTGTGCAGACGTGACCAGGATCGGCGATAAGCACGAGAA
CACGCAGGAGTCACTTTCAAGTGTGGATCCTACTGGGCCAGACGCACAAG
TGACTACCGTCGTGGGTGTCACGGTGGATGTCGCCAAACCCTTGGACGGG
ACTGTACCCCATATAGCAACATCAAGGAAGGGCTCAACAGTTAGGCAGAC
GGGAAGAGAAATACAAGCAGCAGCAGGGTATCGGCGACGATCGTCCTATC
TACCAGGGCAAGCGGTGGGGCGAGCGCGTTCATCGAGAGGAGCAAGCGTA
CAGCTAGCGCTTCCGTTTTTTTCGGAGGAAGGATGGCCATCTGCGTGCAA
CCCTTCGAGTGTCGATGAAGCTAACGCCTCCCAAGCAGGCGCTGATGTAC
AAGCACAAGCATCTGACCATACGGAGGAGGATCAGCAGTGGGAGGACTAC
CACGCACTGAATCCAAGGAGGCAGCACAGCACGCCAAACTTTGTTTCAGT
TCGAAGCCAGTTCGGCGGGAAACGGATTTCTGTGGAACTGTTCGAATCGG
GTGATTCTGACGATTCGTCTACTAGCAGCACCAGCAGCTCTGGTGAAGAT
AGAGGTGCGAAAAAGCTGGAAGCAGAGAAGGCCAAACTCGCTGAAGGCCC
CTTGTCGTGGCAGCAAAGCGAAGAGGGTAAAAAGAGGATGGCACAGCTGA
CGAAGGCGACCGTGCGTGTTGAGACCCCTGCCAACAAGTTATCACGCAAG
TACCTCAAGCTCTTTGCTCCCTCCAACTCGGCCCACGAGACCTACAGAGT
GCTAGCAACCATGCACCGACGAATGAACGGGACG
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