mRNA_P-littoralis_Contig130.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig130.62.1
Unique NamemRNA_P-littoralis_Contig130.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig130.62.1 vs. uniprot
Match: A0A0K8RPM6_IXORI (Putative ubiquitin/40s ribosomal protein s27a fusion (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A0K8RPM6_IXORI)

HSP 1 Score: 65.9 bits (159), Expect = 2.070e-11
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 PPDQQRLIFAGKQLEDGRTLSDYNIQKVSPVKLLSFS 111
            PPDQQRLIFAGKQLEDGRTLSDYNIQK S + L+ FS
Sbjct:   45 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXFS 81
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BLAST of mRNA_P-littoralis_Contig130.62.1 vs. uniprot
Match: A0A667YNB5_9TELE (Ribosomal protein S27a n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667YNB5_9TELE)

HSP 1 Score: 65.9 bits (159), Expect = 2.070e-11
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 PPDQQRLIFAGKQLEDGRTLSDYNIQKVSPVKLLSFSQLLS 123
            PPDQQRLIFAGKQLEDGRTLSDYNIQK+   +LL  S +L+
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKLLHYRLLHISMVLN 77
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BLAST of mRNA_P-littoralis_Contig130.62.1 vs. uniprot
Match: A0A7T8JVH6_CALRO (AGAP002599-PA n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8JVH6_CALRO)

HSP 1 Score: 65.9 bits (159), Expect = 7.670e-11
Identity = 32/38 (84.21%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 PPDQQRLIFAGKQLEDGRTLSDYNIQKVSPVKLLSFSQ 114
            PPDQQRLIFAGKQLEDGRTLSDYNIQK SP  L S S+
Sbjct:  104 PPDQQRLIFAGKQLEDGRTLSDYNIQKESPFILCSDSE 141
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BLAST of mRNA_P-littoralis_Contig130.62.1 vs. uniprot
Match: A0A3P8VG79_CYNSE (Ubiquitin-like domain-containing protein n=1 Tax=Cynoglossus semilaevis TaxID=244447 RepID=A0A3P8VG79_CYNSE)

HSP 1 Score: 65.5 bits (158), Expect = 8.840e-11
Identity = 30/34 (88.24%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 PPDQQRLIFAGKQLEDGRTLSDYNIQKVSPVKLL 102
            PPDQQRLIFAGKQLEDGRTLSDYNIQK SP+ L+
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESPLHLV 70
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BLAST of mRNA_P-littoralis_Contig130.62.1 vs. uniprot
Match: A0A8C6PM34_NOTFU (Ubiquitin A-52 residue ribosomal protein fusion product 1 n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=A0A8C6PM34_NOTFU)

HSP 1 Score: 63.9 bits (154), Expect = 9.430e-11
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 PPDQQRLIFAGKQLEDGRTLSDYNIQKVSPVKLL 102
            PPDQQRLIFAGKQLEDGRTLSDYNIQKV  + LL
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKVLQIVLL 70
[Close]
BLAST of mRNA_P-littoralis_Contig130.62.1 vs. uniprot
Match: A0A4W4EBK4_ELEEL (Ribosomal protein S27a n=2 Tax=Clupeocephala TaxID=186625 RepID=A0A4W4EBK4_ELEEL)

HSP 1 Score: 63.5 bits (153), Expect = 1.200e-10
Identity = 33/39 (84.62%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 PPDQQRLIFAGKQLEDGRTLSDYNIQKVSPVKLLSFSQL 117
            PPDQQRLIFAGKQLEDGRTLSDYNIQKV  V L+SF  L
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKVRNV-LVSFVTL 74
[Close]
BLAST of mRNA_P-littoralis_Contig130.62.1 vs. uniprot
Match: A0A4W6F9B6_LATCA (Ubiquitin-like domain-containing protein n=1 Tax=Lates calcarifer TaxID=8187 RepID=A0A4W6F9B6_LATCA)

HSP 1 Score: 64.7 bits (156), Expect = 1.210e-10
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 PPDQQRLIFAGKQLEDGRTLSDYNIQKVSPVKLLSFSQLLSTF*RAFRTRTEVFS 165
            PPDQQRLIFAGKQLEDGRTLSDYNIQK S + L+   Q+        +T T +FS
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVGGMQIF------VKTLTGIFS 85
[Close]
BLAST of mRNA_P-littoralis_Contig130.62.1 vs. uniprot
Match: A0A6A6GHU4_9PEZI (Ubiquitin family-domain-containing protein n=1 Tax=Elsinoe ampelina TaxID=302913 RepID=A0A6A6GHU4_9PEZI)

HSP 1 Score: 63.5 bits (153), Expect = 1.330e-10
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 1 
Query:    1 PPDQQRLIFAGKQLEDGRTLSDYNIQKVSPV 93
            PPDQQRLIFAGKQLEDGRTLSDYNIQKVS +
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKVSGI 67
[Close]
BLAST of mRNA_P-littoralis_Contig130.62.1 vs. uniprot
Match: A0A811YF85_NYCPR ((raccoon dog) hypothetical protein n=1 Tax=Nyctereutes procyonoides TaxID=34880 RepID=A0A811YF85_NYCPR)

HSP 1 Score: 65.1 bits (157), Expect = 1.550e-10
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 1 
Query:    1 PPDQQRLIFAGKQLEDGRTLSDYNIQKVSPVKLLSFSQLLSTF*RAFRTRTEVFSGQQETSGIMWCVQDN 210
            PPDQQRLIFAGKQLEDGRTLSDYNIQK S + L+   +       A R+  E+ S      GI+  VQ++
Sbjct:   37 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR------GACRSSMEIPSTLDRARGILASVQEH 100
[Close]
BLAST of mRNA_P-littoralis_Contig130.62.1 vs. uniprot
Match: A0A0V1AQ62_TRISP (Polyubiquitin-B (Fragment) n=2 Tax=Trichinella spiralis TaxID=6334 RepID=A0A0V1AQ62_TRISP)

HSP 1 Score: 65.5 bits (158), Expect = 1.560e-10
Identity = 38/72 (52.78%), Postives = 44/72 (61.11%), Query Frame = 1 
Query:    1 PPDQQRLIFAGKQLEDGRTLSDYNIQKVSPVKLLSFSQLLSTF*RAFRTRTEVFSGQQETSGIMWCVQDNFR 216
            PPDQQRLIFAGKQLEDGRTLSDYNIQK S + L+     L    R F    +    + E+S  + CV   FR
Sbjct:   71 PPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVL---RLRGGMRNFGKTDQTAISEVESSRTIGCVNIQFR 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0K8RPM6_IXORI2.070e-1183.78Putative ubiquitin/40s ribosomal protein s27a fusi... [more]
A0A667YNB5_9TELE2.070e-1175.61Ribosomal protein S27a n=1 Tax=Myripristis murdjan... [more]
A0A7T8JVH6_CALRO7.670e-1184.21AGAP002599-PA n=1 Tax=Caligus rogercresseyi TaxID=... [more]
A0A3P8VG79_CYNSE8.840e-1188.24Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
A0A8C6PM34_NOTFU9.430e-1188.24Ubiquitin A-52 residue ribosomal protein fusion pr... [more]
A0A4W4EBK4_ELEEL1.200e-1084.62Ribosomal protein S27a n=2 Tax=Clupeocephala TaxID... [more]
A0A4W6F9B6_LATCA1.210e-1061.82Ubiquitin-like domain-containing protein n=1 Tax=L... [more]
A0A6A6GHU4_9PEZI1.330e-1093.55Ubiquitin family-domain-containing protein n=1 Tax... [more]
A0A811YF85_NYCPR1.550e-1052.86(raccoon dog) hypothetical protein n=1 Tax=Nyctere... [more]
A0A0V1AQ62_TRISP1.560e-1052.78Polyubiquitin-B (Fragment) n=2 Tax=Trichinella spi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig130contigP-littoralis_Contig130:279958..280408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog244447.XP_008323363.1
Preferred nameUBB
PFAMsubiquitin
Model size453
Max annot lvl33208|Metazoa
KEGG koko:K04551,ko:K08770
KEGG Pathwayko03320,ko04137,ko04144,ko05012,ko05167,map03320,map04137,map04144,map05012,map05167
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000280,GO:0000902,GO:0003006,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006464,GO:0006725,GO:0006807,GO:0006810,GO:0006928,GO:0006950,GO:0006974,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007127,GO:0007140,GO:0007141,GO:0007143,GO:0007144,GO:0007275,GO:0007276,GO:0007292,GO:0007399,GO:0007417,GO:0007420,GO:0007548,GO:0007568,GO:0008150,GO:0008152,GO:0008340,GO:0008406,GO:0008584,GO:0008585,GO:0009653,GO:0009888,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010259,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0010970,GO:0016043,GO:0016567,GO:0019222,GO:0019538,GO:0019953,GO:0021536,GO:0021761,GO:0021854,GO:0021872,GO:0021879,GO:0021884,GO:0021886,GO:0021888,GO:0021953,GO:0021954,GO:0021979,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0030030,GO:0030154,GO:0030162,GO:0030182,GO:0030705,GO:0030900,GO:0031175,GO:0031323,GO:0031329,GO:0031386,GO:0031974,GO:0031981,GO:0032268,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032990,GO:0033554,GO:0034641,GO:0034643,GO:0035295,GO:0036211,GO:0036477,GO:0042176,GO:0042391,GO:0042592,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0046483,GO:0046545,GO:0046546,GO:0046660,GO:0046661,GO:0046907,GO:0047497,GO:0048232,GO:0048285,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048583,GO:0048584,GO:0048608,GO:0048609,GO:0048666,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048871,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051246,GO:0051321,GO:0051640,GO:0051641,GO:0051646,GO:0051649,GO:0051654,GO:0051656,GO:0051704,GO:0051716,GO:0051881,GO:0060255,GO:0060322,GO:0060612,GO:0060613,GO:0061136,GO:0061448,GO:0061458,GO:0061982,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0072384,GO:0072520,GO:0080090,GO:0090304,GO:0097009,GO:0097458,GO:0099111,GO:0120025,GO:0120036,GO:0120039,GO:0140013,GO:1901214,GO:1901360,GO:1901564,GO:1901796,GO:1901798,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903046,GO:1903050,GO:1903362,GO:2000241,GO:2000242,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons1
Evalue3.54e-12
EggNOG OGsCOG5272@1|root,KOG0001@2759|Eukaryota,38ECC@33154|Opisthokonta,3B9NC@33208|Metazoa,3CXIG@33213|Bilateria,484F0@7711|Chordata,495KV@7742|Vertebrata
Ec32 ortholog descriptionUbiquitin-like
Ec32 orthologEc-06_008610.2
Descriptionintracellular transport of virus
Cds size132
COG categoryO
BRITEko00000,ko00001,ko04121,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789590.887661-UTR-P-littoralis_Contig130:279957..2802761680789590.887661-UTR-P-littoralis_Contig130:279957..280276Pylaiella littoralis U1_48UTRP-littoralis_Contig130 279958..280276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789590.902023-CDS-P-littoralis_Contig130:280276..2804081680789590.902023-CDS-P-littoralis_Contig130:280276..280408Pylaiella littoralis U1_48CDSP-littoralis_Contig130 280277..280408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig130.62.1prot_P-littoralis_Contig130.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig130 280277..280408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig130.62.1

>prot_P-littoralis_Contig130.62.1 ID=prot_P-littoralis_Contig130.62.1|Name=mRNA_P-littoralis_Contig130.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=44bp
PPDQQRLIFAGKQLEDGRTLSDYNIQKVSPVKLLSFSQLLSTF*
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mRNA from alignment at P-littoralis_Contig130:279958..280408-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig130.62.1 ID=mRNA_P-littoralis_Contig130.62.1|Name=mRNA_P-littoralis_Contig130.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=451bp|location=Sequence derived from alignment at P-littoralis_Contig130:279958..280408- (Pylaiella littoralis U1_48)
CCTCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGG
CCGCACCCTTTCGGACTACAACATCCAAAAGGTGAGTCCTGTAAAGCTTT
TGAGTTTTAGTCAGTTGTTGTCGACGTTCTGACGTGCTTTTCGTACACGC
ACTGAAGTGTTTTCGGGCCAACAAGAAACATCAGGGATCATGTGGTGCGT
CCAGGACAATTTCCGTTATTTGTGTTTTCGTTATAACTTTTGAACAAAAA
CGAATTGAGACGCGAACCAGCAACATGAGCAATAACCAGGAAACGGTCAA
GCGATCGCTGCTGAATGTTTTGTTGAGGATACCTCTCTAATTTCAAGTCA
TTTTGGTTAATAATTATAGAAAAAAGCTGTCTTGTGGACAAAAATCGGCT
AGAAATATCCACGTATGCTCTCGAGAAATATCGTTTTTCTAGAAAAACAA
A
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Coding sequence (CDS) from alignment at P-littoralis_Contig130:279958..280408-

>mRNA_P-littoralis_Contig130.62.1 ID=mRNA_P-littoralis_Contig130.62.1|Name=mRNA_P-littoralis_Contig130.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=132bp|location=Sequence derived from alignment at P-littoralis_Contig130:279958..280408- (Pylaiella littoralis U1_48)
CCTCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTGGAGGACGG
CCGCACCCTTTCGGACTACAACATCCAAAAGGTGAGTCCTGTAAAGCTTT
TGAGTTTTAGTCAGTTGTTGTCGACGTTCTGA
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