prot_P-littoralis_Contig130.35.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig130.35.1
Unique Nameprot_P-littoralis_Contig130.35.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length223
Homology
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BLAST of mRNA_P-littoralis_Contig130.35.1 vs. uniprot
Match: D8LC60_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC60_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 7.910e-49
Identity = 105/212 (49.53%), Postives = 131/212 (61.79%), Query Frame = 0 
Query:   16 RPEVSVRIRGRGETTLEAQFNDAETVAKFKARVFGGDMAEGQKCRLIASGRELRDPQPMWLYGIQEGACLHVMISKKRAEGQTKQGSPKAVVAAXXXXXXXXXXXXXSSSAAXXXXXXXXXSPPGLSFIGAMDGYLILCTLTTGMLVSGWTFYMVFPELISPLSACLMLLLTLLQLAAMMPLLLRAVSRVLRACH-----RSSSRVPERRRQ 222
            RP VSVR+RGR ETTLE QF+DAETVA FK RVFG  + EG++CRLIASG+EL+D   M  Y IQEG+C+HVMIS++ +    ++G+P A                  S+AA         S      +G   G  ILC LT GM+++ WT YMVFPEL S  + CL+LLLTLLQLAA +P+L +A+S  L AC      R  S VP RRRQ
Sbjct:    3 RPAVSVRVRGRDETTLEVQFDDAETVADFKTRVFGDVIGEGKRCRLIASGKELQDSHKMGSYRIQEGSCMHVMISQRGSVAGAERGTPCAAAV-------------PPSAAA---------STSSSRGVGRGAGSAILCALTLGMVMAAWTVYMVFPELFSCAATCLLLLLTLLQLAATLPILKQALSAALGACWWRPWVRRPSSVPGRRRQ 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.35.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC60_ECTSI7.910e-4949.53Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 28..91
e-value: 8.5E-8
score: 31.9
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 19..94
score: 13.859252
NoneNo IPR availableGENE3D3.10.20.90coord: 19..106
e-value: 3.2E-8
score: 35.3
NoneNo IPR availablePANTHERPTHR14557:SF5TRANSMEMBRANE AND UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN 1coord: 19..195
IPR040352Transmembrane and ubiquitin-like domain-containing protein 1/2PANTHERPTHR14557PROTEIN C7ORF21coord: 19..195
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 19..94

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig130contigP-littoralis_Contig130:188963..193217 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig130.35.1mRNA_P-littoralis_Contig130.35.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig130 188841..194525 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig130.35.1 ID=prot_P-littoralis_Contig130.35.1|Name=mRNA_P-littoralis_Contig130.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp
MLRPSNSVRTRPAILRPEVSVRIRGRGETTLEAQFNDAETVAKFKARVFG
GDMAEGQKCRLIASGRELRDPQPMWLYGIQEGACLHVMISKKRAEGQTKQ
GSPKAVVAAAAALAAPPAPPAPSSSAAPPAPAPSSSSPPGLSFIGAMDGY
LILCTLTTGMLVSGWTFYMVFPELISPLSACLMLLLTLLQLAAMMPLLLR
AVSRVLRACHRSSSRVPERRRQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin-like_dom
IPR040352TMUB1/2
IPR029071Ubiquitin-like_domsf