mRNA_P-littoralis_Contig130.35.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig130.35.1
Unique NamemRNA_P-littoralis_Contig130.35.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig130.35.1 vs. uniprot
Match: D8LC60_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC60_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 1.480e-44
Identity = 105/212 (49.53%), Postives = 131/212 (61.79%), Query Frame = 3 
Query:  168 RPEVSVRIRGRGETTLEAQFNDAETVAKFKARVFGGDMAEGQKCRLIASGRELRDPQPMWLYGIQEGACLHVMISKKRAEGQTKQGSPKAVVAAXXXXXXXXXXXXXSSSAAXXXXXXXXXSPPGLSFIGAMDGYLILCTLTTGMLVSGWTFYMVFPELISPLSACLMLLLTLLQLAAMMPLLLRAVSRVLRACH-----RSSSRVPERRRQ 788
            RP VSVR+RGR ETTLE QF+DAETVA FK RVFG  + EG++CRLIASG+EL+D   M  Y IQEG+C+HVMIS++ +    ++G+P A                  S+AA         S      +G   G  ILC LT GM+++ WT YMVFPEL S  + CL+LLLTLLQLAA +P+L +A+S  L AC      R  S VP RRRQ
Sbjct:    3 RPAVSVRVRGRDETTLEVQFDDAETVADFKTRVFGDVIGEGKRCRLIASGKELQDSHKMGSYRIQEGSCMHVMISQRGSVAGAERGTPCAAAV-------------PPSAAA---------STSSSRGVGRGAGSAILCALTLGMVMAAWTVYMVFPELFSCAATCLLLLLTLLQLAATLPILKQALSAALGACWWRPWVRRPSSVPGRRRQ 192
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.35.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LC60_ECTSI1.480e-4449.53Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig130contigP-littoralis_Contig130:188841..194525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog104355.XP_007860449.1
PFAMsUBA,ubiquitin
Model size2099
Max annot lvl4751|Fungi
KEGG koko:K04523
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorymitochondrion
GOsGO:0000226,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010605,GO:0016043,GO:0019222,GO:0019538,GO:0019941,GO:0022402,GO:0022607,GO:0030163,GO:0030433,GO:0030474,GO:0030674,GO:0031023,GO:0031593,GO:0033554,GO:0034976,GO:0036503,GO:0042176,GO:0042177,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0048519,GO:0050789,GO:0050896,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051300,GO:0051603,GO:0051716,GO:0060090,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0140030,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Exons5
Evalue7.88e-05
EggNOG OGsCOG5272@1|root,KOG0010@2759|Eukaryota,38CHK@33154|Opisthokonta,3NUAJ@4751|Fungi,3V0AR@5204|Basidiomycota,22827@155619|Agaricomycetes,3H1NK@355688|Agaricomycetes incertae sedis
Ec32 ortholog descriptionUbiquitin-like
Ec32 orthologEc-20_004560.1
DescriptionHeat shock chaperonin-binding motif.
Cds size669
COG categoryO
BRITEko00000,ko00001,ko03051,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig130.35.1prot_P-littoralis_Contig130.35.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig130 188963..193217 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789589.5808501-UTR-P-littoralis_Contig130:188840..1889621680789589.5808501-UTR-P-littoralis_Contig130:188840..188962Pylaiella littoralis U1_48UTRP-littoralis_Contig130 188841..188962 +
1680789589.642683-UTR-P-littoralis_Contig130:193217..1945251680789589.642683-UTR-P-littoralis_Contig130:193217..194525Pylaiella littoralis U1_48UTRP-littoralis_Contig130 193218..194525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789589.5925803-CDS-P-littoralis_Contig130:188962..1890641680789589.5925803-CDS-P-littoralis_Contig130:188962..189064Pylaiella littoralis U1_48CDSP-littoralis_Contig130 188963..189064 +
1680789589.6036284-CDS-P-littoralis_Contig130:191096..1911681680789589.6036284-CDS-P-littoralis_Contig130:191096..191168Pylaiella littoralis U1_48CDSP-littoralis_Contig130 191097..191168 +
1680789589.6122603-CDS-P-littoralis_Contig130:191761..1919181680789589.6122603-CDS-P-littoralis_Contig130:191761..191918Pylaiella littoralis U1_48CDSP-littoralis_Contig130 191762..191918 +
1680789589.6202781-CDS-P-littoralis_Contig130:192520..1926631680789589.6202781-CDS-P-littoralis_Contig130:192520..192663Pylaiella littoralis U1_48CDSP-littoralis_Contig130 192521..192663 +
1680789589.6318855-CDS-P-littoralis_Contig130:193022..1932171680789589.6318855-CDS-P-littoralis_Contig130:193022..193217Pylaiella littoralis U1_48CDSP-littoralis_Contig130 193023..193217 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig130.35.1

>prot_P-littoralis_Contig130.35.1 ID=prot_P-littoralis_Contig130.35.1|Name=mRNA_P-littoralis_Contig130.35.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=223bp
MLRPSNSVRTRPAILRPEVSVRIRGRGETTLEAQFNDAETVAKFKARVFG
GDMAEGQKCRLIASGRELRDPQPMWLYGIQEGACLHVMISKKRAEGQTKQ
GSPKAVVAAAAALAAPPAPPAPSSSAAPPAPAPSSSSPPGLSFIGAMDGY
LILCTLTTGMLVSGWTFYMVFPELISPLSACLMLLLTLLQLAAMMPLLLR
AVSRVLRACHRSSSRVPERRRQ*
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mRNA from alignment at P-littoralis_Contig130:188841..194525+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig130.35.1 ID=mRNA_P-littoralis_Contig130.35.1|Name=mRNA_P-littoralis_Contig130.35.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5685bp|location=Sequence derived from alignment at P-littoralis_Contig130:188841..194525+ (Pylaiella littoralis U1_48)
TCTGATGTTTTGTGAAAAACCAACCTGAGAAAAAACAAAAAAAAAGACAA
AAAGCGTTGCCGCCGGCTGCACAACAAGGGTGCTGCAGCAAACTTGCTTC
AAAGGACAACCAACACCTAACGATGTTGAGACCATCTAATAGTGTCCGGA
CTCGCCCAGCGATATTGAGACCGGAAGTGAGCGTTCGTATTCGTGGGAGA
GGAGAAACAACGCTGGAAGCGCAGGTAGGCGCCTTATGTAACCGAAACCG
CGTGTTGGACAGTTTTTTTTTTATTTTTTGCATGTAATAGGTGTCGGTCA
GGACACCGACCGGTGTTCCGGTACACTGCAGCACTGCAGCAGCAAGACGA
AGACACGTCATTGTTGAAGCAGACACACTTTCGAATCGTGTGTCAGGTGT
GGGGTGACCACGCTTACATTGCTCGATGCTGCTGTGCGGGTCCGTGCAAA
GTTTAATTTTGGGGGACATGCCTTGCAGAGTATTTTATACAAAATGCCGC
GTCCGTTTCGCTGCTGTGTTCTACTCGAAGTATATACTTCTACAGCGTAT
ATACGAGTTGCATGAATTTTCTGCCCTTCTGCCTTTTTGCCTCCTTCACG
CCTGCGTACTTGCGCTGCCTGAAACTGTTACTGGGCCGGTGAAGCAAGAA
GAGAGTAGTACGCCCAGTGTCCTTTTTATCGACACCTTGGCATCTGAATT
CGGTGTCTTTTTGTCTTTTTGTCACTCCTCTGTGACTTTTTATTTTATTT
TTGACTTTTTATTTCTTTTTATTTCATTTTGTGACTTGGCTCTGGACCAT
GCTTCCTTTTCTTGTTTTCTTGTATCTTGTTCTCTTTTTGTACAGCGTTG
TGTGATTTCTCGGGGTCCGTTTTTGTTTTTGTCGGAGTCTCCTTGTCGTG
CCTTTATTTGGTGGACTGAGGGGATCTCCCGAGTACTATATACCTCTTCT
GGGGCAAGCAGCCTGTGACCACGGAAATCGTACCTGATCGGTGGAGGACG
GACATTGGAAGGTACTGAGGAGAGATCGGAATGGTTTTTAATGTGAAGAC
AACAACAACAACAACAACAACAACAACAACAATGAATCCCGGTCCAGTAA
CACGACCTGGGATTTGTTCTCATATCGTGCGTTAGGGTAGAAAGCGATGA
ATTCGTGAGTAAACAAAATTCGATTGAATTGTCGACGAGGGAACGGAACG
GTTGCACCCTTCTCGCGACAAAAAATAAGCCAAGTACAGTACCGCAGTGG
GAAGTGGAGAAAAATAAAATAAAATCCTGTGTTGACTTCCTACTGCTGTG
TGACCCCGGTTGGAGCGTCTACCTACCCGAAAGGAGTAGCGTGGCGTCCA
ATTAAAGGGATGGCAACACACACACACAGAGTACACTTTCACGGACGGCG
AGAAGACGATACTGCTGCATTCACCCCGCGTGTACCGTATTTTTACTACG
GAGTGCCAGCACGTATGGCTAATAGTGGTATATACTACTTCGAAGTACAA
GTATATGTTATCACAGCAGTTGACGAGGGTAAGGGACGGTTGAACCCTTC
AAGCGATGAAAAGCTGAAAGAGAGGCAAAAAGGCAAGCAATGCAGAATGT
AGGTGGAGGGAAAAAATATACAAGTATACAAGTACGAAGTGTATGGTACT
TCGTATATACGAGTATCCTGTGTGATCTCCTTCTTGTTCTGTGTCTCAAA
CTGTACCCCGGCTGGTGCACCCACTTCATGTCGAAAATTGTAGAATGGTG
ACCCGAATAAATGGGACGAAAAACACGCACCCACACTTCGTAATTAATGG
CATGGCTTAGCCCTCCGGGCCAATGAAACATGAAACAGCACGCATTTCGA
CCGTCGTCACACGAGATATCTGGCCTACGTACGGCAGTGTATCTCCCAGG
ACGAGTGGATGCTTGCGGCATTCTTGTACCGGCGCCAGTACACACCATCG
TAAATCAGCGCTACTGCGTACTGTCAAGGGGATGACGGCCCGCTTTTGTT
TTTGTCTATGTTGTTGTTGCTTAATTAACATTGGGGATAACGGCCCGATT
GACTGGGCAATTATGTACTTCGAAGTATCATTCGGGCGGCATTTATGTCG
CTGCTGCTCCTGCTGCTGCTGTGGCCTTGCAGAAACAACAACCGATACCG
CCGTACCACTGCTGTACGAGCACTTCACTAAAATGCAGTCGTCTGTGTGC
AACGGCTGTAACCGTCGTCGTCGAACGCGTCATCGTTTTCTCGCTTCCGA
AACCAGTTCAATGATGCGGAGACGGTGGCGAAGTTCAAGGCGCGTGTTTT
CGGTGGCGACATGGCAGAAGGCCAAAAGGTCAGGGAATCAAAAGAAGGGC
CAAACGAGGAACACTGCTGTTGTTCGTTTATTTTTTGGAACGTTCAGAGA
TTCCCGCGAAAAAGAAGGGGAAGACCCGACGTACCGGTGAAAATTAGTGG
AAGAGATTGACCGAAGCGGGCTCCTGAGAGACGCCGCATGCCCTTCCCCC
TAGCTGGTGTCTCGTGTATTTCGTGCTTCGTACTCGAAGTGTATCTTAGC
GGCAGCAGGAGGAGGGGGATTGCAGTACGCATCACAGCTAGTAACGTCTG
CGCGCTTTGTTCCCGGTGCATCAGCGTTGTTCTCCGACCTATTCACAACA
CAGACAAGGGATAAACAGGGAACCACACGAGAGACTCGTCGAAGCCGAAC
TGCTGCTTTTGTGTGCTTGTGTGTGCTTTTTTTTCGTTCCCTACCTGCTC
TTTTCCCCGCCTGTTTTTGTACATATTTTATTTTGTCCTCCTCGCACCCC
AAATCCCGAAACCGTGCTGACTCTGGCCCTTGCCCCCCAACGCGTAACGT
AAACTAACCTTCGTAATCCGACCGATTCCTCGTGCTTCGCCCGCCTCTCT
TGTGGCCCGATTTACGAGCAGTGCCGACTGATCGCAAGCGGCAGAGAGCT
GCGGGACCCGCAGCCGATGTGGCTTTACGGTATACAAGAGGGCGCCTGCC
TGCACGTGATGATTAGCAAGAAACGCGCGGAGGGGCAGACCAAACAGGGG
TCCCCCAAAGCTGTTGTTGCTGCTGCAGGTGCAGAATGACAGAAAGAACA
CAACCATCACCACGTTTTATGGACTTCGCGAAAATTTGGTTCACGTGTAG
GAAATGAGTCGTGCGGATAAACTTGTGCATGTATTTCCTGTATCGAGGGA
GAGCCTATTTTTTCGGCGGCCCCACCAATGCGTGCTTGGCACACGCTTGC
ATCGCTCGGGGCGACTGTGTCGCCTGCTGAGCGGTGAAGACTGGACTGCT
CGGTTGTTTGTTGACAAGATTTTCCAGTCGTGCATCGTTGGTGTGAAGCC
TCGGGGTGCCTTCTCTACGCCCGCCTCCCCCTCACGCTAGCGTGCTGGCT
GCAAATCCCGTGCTCGACTTCGATGTACGAACCTAGAATATATCTTGTGA
AGGCTTCAGTTCATGGCTACAGGGAGCCTAAGCCATCTACCATACTGTAA
AGTAAATAATCCTGTGTTGACTTTGCTCCTGTGTGGCTTGTACGAGCCCC
GGCTGGTGCGCCCAACCAGGCTGGTGCGCCGAACCTCTACCTTAAGGTGT
AGACTGGTGTCACACACACACTCTACCGCCGTTTCCCTTTAATGTTGTTG
TACGTTCGATATCACCATCATCATCGGCAGCAGCACTAGCAGCACCACCA
GCACCACCAGCACCATCATCATCAGCAGCACCACCAGCACCAGCACCATC
ATCATCATCACCGCCCGGGCTATCATTTATAGGTGCCATGGATGGTTATT
TGATCCTGTGCACTCTAACCACGGTGAGGGCAATCATATGATGCGGATCC
AGAAGCAGTAACATACTACCATAGCAGTCATGTATCCTGCGCGTCGACTC
GGCTTTAAGGGGCCTTGGCTCTACCCGAGCTGCGGTACACGGCTCTTGCT
ATTCTACGATGATCGTGTGTCTACGCAAAAGAGCCGCATAGCCCCGTGGG
CGTGTTTATAAGTTTCAGGTTCAAGTACCGTCGCTCCGAGTTGCACAAAT
ACAGGAAGGAAGGAGAAGCTCCGCCCGTGACCGGATGATCCGATGTACAA
ACGGTACGTACCCAACCAACTGAACCCTGCGTCGTCCGTGCTTTGCGTGC
GTGCGTCTGTGCGAACGCTGATGTCACCACAGGGAATGCTGGTCTCCGGT
TGGACGTTCTACATGGTGTTTCCGGAGCTGATTTCACCCCTGTCGGCGTG
CCTCATGCTGCTGCTCACCCTCCTGCAGCTAGCGGCCATGATGCCTCTCC
TGTTGAGAGCCGTGTCGAGGGTGCTCCGGGCATGCCACAGATCATCGTCC
CGGGTACCTGAAAGGAGAAGACAGTGAGGGGAGGAAATCCGGACGCAACA
GATTTGTAGAGTAGGTGTACAGTAGGTGTGTGTGTCTGCGCTGGGGGCAC
TGACTCCGTGTAAAGGTACAGGCTCTGACGAACGAGCACCCCGCGTGACT
GATTGACTTCTGTTTGTCCGTGTTGGTCGAATCGCACGAGGGTTGTGTAT
GTAAAAACTGGACTGCATCGCCGGCCTGAACGTGAATGTGCGTACATGTG
ATGTCATACACTGTACGTATTTTAAAATTTGATCATATGATATGTTTTTT
GAAACTTGCCGGATGTGTGTGTGCGTCGACTTTTTGAGCTTCACGTGTGG
CAAGGAACGTCCTTGATTTTTTTTCTATCTTCTCCAACTTTTGCGCTGCC
ACGGCTCTTGACTGTCACGGGGTGACGAAGTCACACGAAACGTTCAGCCG
TGCGTGTTACACCTATGATATCATAGAGGTAGATCGGGGCGACGCTCGCC
CATTTTTGCGCTGGCGGGGGTGTGCATGTCGGAAAAATATGTTTTTTTAG
TTCCTGACAGCGCACCACTGCTTGTTGTATTGCATATGATATGTAGACGA
ATTTGGGCAGCGGAGGTGGCCAAAATTTGAAGCTTGCATTGGATGGTGCG
AAAAGTTGATGCGCGGTTGGTGTGGAGTGTTTTGGTCTGGTACGAGTATG
GTGAGACCGACGGTGGCCGCTCGCCCGCCCTCTGCTAGACTCTGCTAGAT
TTGCTGGTGCCTCGATCGTGGCTGCGCGGTTGGCTTCGAGATGGGCAACC
GTATGAATGCGCTCAGAGGAAGCGAACTCGATGCAAGCTGTTTGTACCTT
TTTTTTCATTATCAGTTTTTCGCCCGTGGCACACCCGCTGCTGCATGTGG
TGCTTGTACATTTGGGTGTACACAGACATTTGTATCGCGAAGTGTGCCCC
AGTGTTGTTTGGGATTGAAAATAAACACGCTTTCGGGAAAGGAAATGCCC
AAGAGAGCATGCTGGAGGGGGGGCGGGGGGGTGGCGCTGCGGTGTCTTGG
ACAGAGCTTTCTTGAGCTCTCGTCTGTTCTGTGTAAGTTTCTGGAGCAGA
CTGGAGCGGAAACACTTGCATCCGCTCGCTTTCGTATGATACAAAGTGGA
AAACTACGGTTTCGGTCAGTGCGTGGCTACGACTTTCACCTTTTTCGTTT
GGTGTCTATGGCGTCGTCACAGTAGTGCTCGCGCACCCGCGTAACACACT
CACGATGTAATTTGATCAGCAGTGAGGGAGTGTGCAGTTTCATGACAATG
TAATATACCGCGAGAGTACATCTGGAACTTTGTCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig130:188841..194525+

>mRNA_P-littoralis_Contig130.35.1 ID=mRNA_P-littoralis_Contig130.35.1|Name=mRNA_P-littoralis_Contig130.35.1|organism=Pylaiella littoralis U1_48|type=CDS|length=669bp|location=Sequence derived from alignment at P-littoralis_Contig130:188841..194525+ (Pylaiella littoralis U1_48)
ATGTTGAGACCATCTAATAGTGTCCGGACTCGCCCAGCGATATTGAGACC
GGAAGTGAGCGTTCGTATTCGTGGGAGAGGAGAAACAACGCTGGAAGCGC
AGTTCAATGATGCGGAGACGGTGGCGAAGTTCAAGGCGCGTGTTTTCGGT
GGCGACATGGCAGAAGGCCAAAAGTGCCGACTGATCGCAAGCGGCAGAGA
GCTGCGGGACCCGCAGCCGATGTGGCTTTACGGTATACAAGAGGGCGCCT
GCCTGCACGTGATGATTAGCAAGAAACGCGCGGAGGGGCAGACCAAACAG
GGGTCCCCCAAAGCTGTTGTTGCTGCTGCAGCAGCACTAGCAGCACCACC
AGCACCACCAGCACCATCATCATCAGCAGCACCACCAGCACCAGCACCAT
CATCATCATCACCGCCCGGGCTATCATTTATAGGTGCCATGGATGGTTAT
TTGATCCTGTGCACTCTAACCACGGGAATGCTGGTCTCCGGTTGGACGTT
CTACATGGTGTTTCCGGAGCTGATTTCACCCCTGTCGGCGTGCCTCATGC
TGCTGCTCACCCTCCTGCAGCTAGCGGCCATGATGCCTCTCCTGTTGAGA
GCCGTGTCGAGGGTGCTCCGGGCATGCCACAGATCATCGTCCCGGGTACC
TGAAAGGAGAAGACAGTGA
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