mRNA_P-littoralis_Contig130.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig130.30.1
Unique NamemRNA_P-littoralis_Contig130.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig130.30.1 vs. uniprot
Match: D8LUA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUA1_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 5.300e-50
Identity = 113/206 (54.85%), Postives = 130/206 (63.11%), Query Frame = 1 
Query:   10 LEADVLSVVLQYVDTLDDTSPRHHIQHVVQIRGGAECRRVSRGWRTSVEDAIGRALPPMPSVSLASLLVPGRLRFVLLSCRYNHLGE-----GVDRAYDALVSRAEAVGVQLRDATAXXXXXXXXXXXXXXXXPSS---SREQDGSRVSPAECRHYSCYRVALKRIVGEVLDSPAFAWCSTLDPDDSRLLRGCVGALALLKACWFS 603
            LEADVLSVVL++VD+L+   P   + HVV ++GGAECR V R WR +VE  IGR LPPM  VSLA+LLVPGRLR VLLSC+Y  LG          A+ ALVSRA+A          XXXXXXXXX       PS    + E  G          + C RVALKRIV E LDSPAF+WCSTL  DDSRLL  CVGA +L+ A WFS
Sbjct:    3 LEADVLSVVLEFVDSLEGAPPSEEVAHVV-VQGGAECRAVCRSWRITVEKTIGRVLPPMTPVSLAALLVPGRLRGVLLSCQY--LGREFHEHAAAAAFVALVSRADAXXXXXXXXXXXXXXXXXXXAGAPRGVPSQGVMAEEAAGGEGIINNNTSFVCCRVALKRIVREALDSPAFSWCSTLGLDDSRLLESCVGASSLVNARWFS 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LUA1_ECTSI5.300e-5054.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig130contigP-littoralis_Contig130:173593..174363 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size609
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004240.1
Cds size609
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789589.37392-CDS-P-littoralis_Contig130:173592..1736651680789589.37392-CDS-P-littoralis_Contig130:173592..173665Pylaiella littoralis U1_48CDSP-littoralis_Contig130 173593..173665 +
1680789589.3842223-CDS-P-littoralis_Contig130:173710..1740191680789589.3842223-CDS-P-littoralis_Contig130:173710..174019Pylaiella littoralis U1_48CDSP-littoralis_Contig130 173711..174019 +
1680789589.392475-CDS-P-littoralis_Contig130:174136..1743631680789589.392475-CDS-P-littoralis_Contig130:174136..174363Pylaiella littoralis U1_48CDSP-littoralis_Contig130 174137..174363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig130.30.1prot_P-littoralis_Contig130.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig130 173593..174363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig130.30.1

>prot_P-littoralis_Contig130.30.1 ID=prot_P-littoralis_Contig130.30.1|Name=mRNA_P-littoralis_Contig130.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=203bp
MVVLEADVLSVVLQYVDTLDDTSPRHHIQHVVQIRGGAECRRVSRGWRTS
VEDAIGRALPPMPSVSLASLLVPGRLRFVLLSCRYNHLGEGVDRAYDALV
SRAEAVGVQLRDATAAAAAAAAAAAVQKTSSPSSSREQDGSRVSPAECRH
YSCYRVALKRIVGEVLDSPAFAWCSTLDPDDSRLLRGCVGALALLKACWF
SE*
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mRNA from alignment at P-littoralis_Contig130:173593..174363+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig130.30.1 ID=mRNA_P-littoralis_Contig130.30.1|Name=mRNA_P-littoralis_Contig130.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=771bp|location=Sequence derived from alignment at P-littoralis_Contig130:173593..174363+ (Pylaiella littoralis U1_48)
ATGGTGGTGCTGGAGGCCGATGTTCTGAGCGTGGTCCTGCAATACGTGGA
CACTCTCGACGACACGTCGCCGAGTCCGTTGTGTCCGTCAGCAAAAACAA
CAACGGCGGCAGCGCGAGGACATCATATACAACATGTTGTTCAAATTCGA
GGGGGAGCAGAGTGCCGTCGCGTGAGCCGAGGTTGGCGCACCTCGGTCGA
AGATGCCATCGGTCGGGCCCTACCACCGATGCCTTCCGTCTCGCTTGCCT
CCCTGCTCGTGCCCGGCAGGCTCCGCTTTGTGCTGCTATCCTGTCGATAC
AACCATCTAGGAGAGGGGGTGGATCGCGCGTACGATGCGCTCGTCTCGCG
GGCCGAAGCGGTGGGCGTTCAACTTCGCGATGCCACAGCAGCAGCAGCAG
CAGCAGCAGCAGCGGCAGCAGTACAAAGTACAGGTGCAGCAGCAGCAGCA
GAAGCAGCAGCAGCAGCAACAACAACAGCAGCAGTCTCCAGCCCTACGCT
GCTAGCAGCGAGTGAAGGCGTGGCGGCTGGAGTTGTAGTACCAGAGACGT
CGTCGCCATCATCATCTCGGGAACAAGACGGAAGTCGGGTTAGTCCTGCG
GAATGTCGCCATTACTCCTGCTACCGGGTCGCGCTGAAGCGGATCGTGGG
AGAAGTCTTGGACAGCCCAGCATTCGCGTGGTGCAGTACTCTCGATCCGG
ACGACTCGCGCCTTCTCCGGGGCTGCGTTGGGGCGCTCGCTCTCCTCAAA
GCATGTTGGTTTTCCGAGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig130:173593..174363+

>mRNA_P-littoralis_Contig130.30.1 ID=mRNA_P-littoralis_Contig130.30.1|Name=mRNA_P-littoralis_Contig130.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=609bp|location=Sequence derived from alignment at P-littoralis_Contig130:173593..174363+ (Pylaiella littoralis U1_48)
ATGGTGGTGCTGGAGGCCGATGTTCTGAGCGTGGTCCTGCAATACGTGGA
CACTCTCGACGACACGTCGCCGAGACATCATATACAACATGTTGTTCAAA
TTCGAGGGGGAGCAGAGTGCCGTCGCGTGAGCCGAGGTTGGCGCACCTCG
GTCGAAGATGCCATCGGTCGGGCCCTACCACCGATGCCTTCCGTCTCGCT
TGCCTCCCTGCTCGTGCCCGGCAGGCTCCGCTTTGTGCTGCTATCCTGTC
GATACAACCATCTAGGAGAGGGGGTGGATCGCGCGTACGATGCGCTCGTC
TCGCGGGCCGAAGCGGTGGGCGTTCAACTTCGCGATGCCACAGCAGCAGC
AGCAGCAGCAGCAGCAGCGGCAGCAGTACAAAAGACGTCGTCGCCATCAT
CATCTCGGGAACAAGACGGAAGTCGGGTTAGTCCTGCGGAATGTCGCCAT
TACTCCTGCTACCGGGTCGCGCTGAAGCGGATCGTGGGAGAAGTCTTGGA
CAGCCCAGCATTCGCGTGGTGCAGTACTCTCGATCCGGACGACTCGCGCC
TTCTCCGGGGCTGCGTTGGGGCGCTCGCTCTCCTCAAAGCATGTTGGTTT
TCCGAGTAG
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