mRNA_P-littoralis_Contig130.16.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig130.16.1
Unique NamemRNA_P-littoralis_Contig130.16.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig130contigP-littoralis_Contig130:98777..99073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FMP0
PFAMsAnk_2,Ank_4
Model size298
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000885
EggNOG OGs2AMK4@1|root,2RZCC@2759|Eukaryota
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789588.437967-CDS-P-littoralis_Contig130:98776..990161680789588.437967-CDS-P-littoralis_Contig130:98776..99016Pylaiella littoralis U1_48CDSP-littoralis_Contig130 98777..99016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789588.450257-UTR-P-littoralis_Contig130:99016..990731680789588.450257-UTR-P-littoralis_Contig130:99016..99073Pylaiella littoralis U1_48UTRP-littoralis_Contig130 99017..99073 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig130.16.1prot_P-littoralis_Contig130.16.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig130 98777..99016 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig130.16.1

>prot_P-littoralis_Contig130.16.1 ID=prot_P-littoralis_Contig130.16.1|Name=mRNA_P-littoralis_Contig130.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=80bp
ARGYSWSTGICKQAAGDRHLVLLKWCLLNGCPWSWSEVVDAARGGDFADG
SSLDVRIGRSGPTKLEEGKHLWMESGCPW*
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mRNA from alignment at P-littoralis_Contig130:98777..99073+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig130.16.1 ID=mRNA_P-littoralis_Contig130.16.1|Name=mRNA_P-littoralis_Contig130.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig130:98777..99073+ (Pylaiella littoralis U1_48)
GCTAGGGGCTACTCCTGGAGTACGGGCATCTGTAAGCAAGCAGCGGGCGA
TAGGCACCTGGTGCTGCTCAAATGGTGCCTACTGAATGGATGCCCATGGT
CTTGGTCTGAAGTAGTGGACGCAGCGCGTGGCGGTGACTTTGCCGATGGC
TCTTCTTTGGACGTTCGTATTGGACGGAGTGGTCCAACGAAGTTGGAGGA
GGGGAAGCACTTGTGGATGGAGAGTGGTTGCCCATGGTAGTTTTCAACAG
CACTGCGTAGGTTTTTTGACAGTGGGAAAGCAGCGGTAACAGGGTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig130:98777..99073+

>mRNA_P-littoralis_Contig130.16.1 ID=mRNA_P-littoralis_Contig130.16.1|Name=mRNA_P-littoralis_Contig130.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig130:98777..99073+ (Pylaiella littoralis U1_48)
GCTAGGGGCTACTCCTGGAGTACGGGCATCTGTAAGCAAGCAGCGGGCGA
TAGGCACCTGGTGCTGCTCAAATGGTGCCTACTGAATGGATGCCCATGGT
CTTGGTCTGAAGTAGTGGACGCAGCGCGTGGCGGTGACTTTGCCGATGGC
TCTTCTTTGGACGTTCGTATTGGACGGAGTGGTCCAACGAAGTTGGAGGA
GGGGAAGCACTTGTGGATGGAGAGTGGTTGCCCATGGTAG
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