mRNA_P-littoralis_Contig130.94.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig130.94.1
Unique NamemRNA_P-littoralis_Contig130.94.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig130.94.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig130contigP-littoralis_Contig130:412480..413646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1168
Hectar predicted targeting categoryother localisation
Exons1
Cds size972
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789587.595564-CDS-P-littoralis_Contig130:412479..4134511680789587.595564-CDS-P-littoralis_Contig130:412479..413451Pylaiella littoralis U1_48CDSP-littoralis_Contig130 412480..413451 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789587.6064763-UTR-P-littoralis_Contig130:413451..4136461680789587.6064763-UTR-P-littoralis_Contig130:413451..413646Pylaiella littoralis U1_48UTRP-littoralis_Contig130 413452..413646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig130.94.1prot_P-littoralis_Contig130.94.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig130 412480..413451 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig130.94.1

>prot_P-littoralis_Contig130.94.1 ID=prot_P-littoralis_Contig130.94.1|Name=mRNA_P-littoralis_Contig130.94.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=324bp
MAEHGRFPSSAGSDYDGGKTRTSLLPQSEASSSPASRLPSVDHAREGNTA
LGAAVAAGLRQPIGLEQKEADIASSEEMLSMHQDSSGPRSTRCNAGGAKQ
IMHEDAWRLRAEEMERASTLTDSSPPLDSSVRDVLKLRQQSLEWVVTAPA
PEPGGNERASSSAAGQRRPRSPGSSAAPIGFGESSKEVFESTVASGAAGQ
VTTASPSVEKLSEAKDLTYLGNHRTGQVVSEVVLLQRDASSTKEMQATAT
TQLVEELVLLQRDAGSTKEMQATATTQLVEGEVQARPVGPSSLQVSSWVE
PAAEEPEGERENDRCWDEYRHTTG
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mRNA from alignment at P-littoralis_Contig130:412480..413646-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig130.94.1 ID=mRNA_P-littoralis_Contig130.94.1|Name=mRNA_P-littoralis_Contig130.94.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1167bp|location=Sequence derived from alignment at P-littoralis_Contig130:412480..413646- (Pylaiella littoralis U1_48)
GGCGGTGTGTCGGGAGTGGCACCAACACAAAAGTGGCCTAGCTGGCAGGC
AATGAAGCCTTCGCCCAAGGTCACGTCCTGTGCGGTGCATTATGTACGGC
CTTGACATCCCGCTGGGGAGAGGTGCCATGCGGTAGAACGTACGCCTGCG
CAGTGCCCAGCTGTGCGTGGAAGTGATTTAACTGCGGCAGTTCCTATGGC
GGAACATGGACGCTTCCCTTCTTCGGCTGGCAGCGACTACGACGGAGGGA
AGACCCGAACAAGCCTTCTTCCGCAAAGCGAAGCATCTTCTTCCCCCGCC
TCTCGCTTACCTTCGGTGGATCATGCACGCGAAGGAAATACAGCACTCGG
AGCAGCAGTAGCGGCAGGGTTGCGACAACCGATTGGCTTGGAGCAGAAAG
AGGCGGACATTGCCAGCTCTGAAGAAATGCTGAGCATGCACCAAGATTCG
TCGGGACCAAGATCCACCCGGTGCAACGCCGGTGGCGCGAAGCAGATAAT
GCACGAAGATGCTTGGCGTCTCCGAGCAGAGGAAATGGAAAGAGCATCAA
CACTAACGGATTCAAGTCCTCCACTAGACTCTTCAGTGCGAGATGTTTTA
AAATTACGACAACAAAGTTTGGAATGGGTTGTAACTGCACCTGCACCCGA
ACCAGGCGGAAATGAGAGGGCAAGTAGTTCTGCGGCGGGGCAGCGGAGAC
CACGTTCGCCTGGATCATCAGCAGCGCCCATAGGATTTGGCGAAAGCAGC
AAAGAAGTGTTTGAATCAACTGTAGCATCAGGAGCGGCAGGGCAAGTAAC
CACAGCTTCTCCATCCGTGGAGAAATTGTCCGAGGCAAAGGACCTCACTT
ATCTAGGTAATCATCGCACTGGACAAGTGGTTTCGGAGGTGGTTCTGCTC
CAACGAGACGCTAGTAGCACCAAGGAGATGCAAGCAACAGCGACGACCCA
GCTGGTGGAGGAGTTGGTTCTGCTCCAACGAGATGCTGGTAGCACCAAGG
AGATGCAAGCAACAGCGACGACCCAGCTGGTGGAGGGAGAGGTACAAGCA
CGACCGGTTGGACCATCTTCCCTCCAGGTGTCGTCGTGGGTAGAGCCAGC
GGCCGAAGAGCCCGAGGGTGAAAGAGAGAACGACCGCTGTTGGGACGAGT
ATAGGCACACCACGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig130:412480..413646-

>mRNA_P-littoralis_Contig130.94.1 ID=mRNA_P-littoralis_Contig130.94.1|Name=mRNA_P-littoralis_Contig130.94.1|organism=Pylaiella littoralis U1_48|type=CDS|length=972bp|location=Sequence derived from alignment at P-littoralis_Contig130:412480..413646- (Pylaiella littoralis U1_48)
ATGGCGGAACATGGACGCTTCCCTTCTTCGGCTGGCAGCGACTACGACGG
AGGGAAGACCCGAACAAGCCTTCTTCCGCAAAGCGAAGCATCTTCTTCCC
CCGCCTCTCGCTTACCTTCGGTGGATCATGCACGCGAAGGAAATACAGCA
CTCGGAGCAGCAGTAGCGGCAGGGTTGCGACAACCGATTGGCTTGGAGCA
GAAAGAGGCGGACATTGCCAGCTCTGAAGAAATGCTGAGCATGCACCAAG
ATTCGTCGGGACCAAGATCCACCCGGTGCAACGCCGGTGGCGCGAAGCAG
ATAATGCACGAAGATGCTTGGCGTCTCCGAGCAGAGGAAATGGAAAGAGC
ATCAACACTAACGGATTCAAGTCCTCCACTAGACTCTTCAGTGCGAGATG
TTTTAAAATTACGACAACAAAGTTTGGAATGGGTTGTAACTGCACCTGCA
CCCGAACCAGGCGGAAATGAGAGGGCAAGTAGTTCTGCGGCGGGGCAGCG
GAGACCACGTTCGCCTGGATCATCAGCAGCGCCCATAGGATTTGGCGAAA
GCAGCAAAGAAGTGTTTGAATCAACTGTAGCATCAGGAGCGGCAGGGCAA
GTAACCACAGCTTCTCCATCCGTGGAGAAATTGTCCGAGGCAAAGGACCT
CACTTATCTAGGTAATCATCGCACTGGACAAGTGGTTTCGGAGGTGGTTC
TGCTCCAACGAGACGCTAGTAGCACCAAGGAGATGCAAGCAACAGCGACG
ACCCAGCTGGTGGAGGAGTTGGTTCTGCTCCAACGAGATGCTGGTAGCAC
CAAGGAGATGCAAGCAACAGCGACGACCCAGCTGGTGGAGGGAGAGGTAC
AAGCACGACCGGTTGGACCATCTTCCCTCCAGGTGTCGTCGTGGGTAGAG
CCAGCGGCCGAAGAGCCCGAGGGTGAAAGAGAGAACGACCGCTGTTGGGA
CGAGTATAGGCACACCACGGGG
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