mRNA_P-littoralis_Contig100.99.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig100.99.1
Unique NamemRNA_P-littoralis_Contig100.99.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig100.99.1 vs. uniprot
Match: A0A6H5KAF3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAF3_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 1.140e-14
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = 1 
Query:    1 MTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQFFSRVTVLESKLCRHGIVMEERETNTHVIRRLS 237
            + A+GSPSGGW  F NYY P+A AEKER   +++ L   + E P+ +F R  VL S+L  HG++  + + N H++  LS
Sbjct:   94 IIADGSPSGGWKIFLNYYEPRARAEKERLSSQYHGLEMKVGETPQDYFGRFAVLRSRLAPHGVIFSDEDANAHMVYHLS 172
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.99.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KAF3_9PHAE1.140e-1443.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig100contigP-littoralis_Contig100:380757..381011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size256
Hectar predicted targeting categoryother localisation
Exons1
Cds size255
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789341.1333237-CDS-P-littoralis_Contig100:380756..3810111680789341.1333237-CDS-P-littoralis_Contig100:380756..381011Pylaiella littoralis U1_48CDSP-littoralis_Contig100 380757..381011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig100.99.1prot_P-littoralis_Contig100.99.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig100 380757..381011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig100.99.1

>prot_P-littoralis_Contig100.99.1 ID=prot_P-littoralis_Contig100.99.1|Name=mRNA_P-littoralis_Contig100.99.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=85bp
MTAEGSPSGGWSAFKNYYTPQADAEKERARQEWYDLRQGLNEAPKQFFSR
VTVLESKLCRHGIVMEERETNTHVIRRLSSLFNTQ
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mRNA from alignment at P-littoralis_Contig100:380757..381011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig100.99.1 ID=mRNA_P-littoralis_Contig100.99.1|Name=mRNA_P-littoralis_Contig100.99.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig100:380757..381011+ (Pylaiella littoralis U1_48)
ATGACGGCGGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAAGAATTA
CTACACTCCGCAGGCAGATGCTGAGAAAGAAAGAGCACGACAAGAATGGT
ATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAGTTTTTCTCCAGG
GTAACAGTGCTGGAAAGTAAACTTTGTAGACATGGGATTGTAATGGAGGA
GAGAGAAACAAACACGCATGTGATCCGCCGGTTGTCGTCGCTGTTTAACA
CGCAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig100:380757..381011+

>mRNA_P-littoralis_Contig100.99.1 ID=mRNA_P-littoralis_Contig100.99.1|Name=mRNA_P-littoralis_Contig100.99.1|organism=Pylaiella littoralis U1_48|type=CDS|length=255bp|location=Sequence derived from alignment at P-littoralis_Contig100:380757..381011+ (Pylaiella littoralis U1_48)
ATGACGGCGGAAGGTAGTCCCAGTGGAGGGTGGTCTGCGTTCAAGAATTA
CTACACTCCGCAGGCAGATGCTGAGAAAGAAAGAGCACGACAAGAATGGT
ATGATTTGCGCCAGGGACTGAACGAAGCACCAAAGCAGTTTTTCTCCAGG
GTAACAGTGCTGGAAAGTAAACTTTGTAGACATGGGATTGTAATGGAGGA
GAGAGAAACAAACACGCATGTGATCCGCCGGTTGTCGTCGCTGTTTAACA
CGCAA
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