mRNA_P-littoralis_Contig13.160.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.160.1
Unique NamemRNA_P-littoralis_Contig13.160.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig13.160.1 vs. uniprot
Match: A0A6H5JN01_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN01_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.380e-22
Identity = 58/110 (52.73%), Postives = 78/110 (70.91%), Query Frame = 1 
Query:    1 GECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTFAMHENGSFVEGTRVP--PSTRSPPAPIVAAV-MRPGRPKSMN 321
            G C+PVS FGDLDL+LHC  DV VTL+NVAV   LVL++IS + +Q+    I+LD  GA+ ++GKV F  +++G+FV+ TRV   P   S P P++AA  MRPG P+SMN
Sbjct:  128 GACMPVSFFGDLDLLLHCDEDVLVTLKNVAVAHGLVLNLISLNRVQERH-RIVLDHAGASSMEGKVKFTKYDDGNFVQATRVAHGPRRDSRPLPVLAAAAMRPGPPRSMN 236
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BLAST of mRNA_P-littoralis_Contig13.160.1 vs. uniprot
Match: A0A6H5JCD8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCD8_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 2.440e-19
Identity = 49/107 (45.79%), Postives = 73/107 (68.22%), Query Frame = 1 
Query:    1 GECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKIPILLDERGATLLDGKVTFAMHENGSFVEGTRVPPSTRSPPAPIVAAVMRPGRPKSMN 321
            G  L   CFG LD+V HCR DV VT++++AVVP L  D++S +VIQ+    +LL+  G  +L+G+V F+    G++++ TR+     SPPA +VAA +RPGRP+S+N
Sbjct:   51 GRKLKAECFGSLDVVFHCREDVLVTMKDIAVVPDLAFDLVSLNVIQETH-DLLLNSAGTWILNGRVHFSKLPTGNYIQATRIAHGA-SPPA-MVAATVRPGRPRSIN 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JN01_9PHAE1.380e-2252.73Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCD8_9PHAE2.440e-1945.79Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:815698..816019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size322
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789585.3198512-CDS-P-littoralis_Contig13:815697..8160181680789585.3198512-CDS-P-littoralis_Contig13:815697..816018Pylaiella littoralis U1_48CDSP-littoralis_Contig13 815698..816018 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.160.1prot_P-littoralis_Contig13.160.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 815698..816018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.160.1

>prot_P-littoralis_Contig13.160.1 ID=prot_P-littoralis_Contig13.160.1|Name=mRNA_P-littoralis_Contig13.160.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
GECLPVSCFGDLDLVLHCRYDVRVTLRNVAVVPKLVLDVISFSVIQKAKI
PILLDERGATLLDGKVTFAMHENGSFVEGTRVPPSTRSPPAPIVAAVMRP
GRPKSMN
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mRNA from alignment at P-littoralis_Contig13:815698..816019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.160.1 ID=mRNA_P-littoralis_Contig13.160.1|Name=mRNA_P-littoralis_Contig13.160.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=322bp|location=Sequence derived from alignment at P-littoralis_Contig13:815698..816019+ (Pylaiella littoralis U1_48)
GGGGAGTGTCTGCCTGTATCGTGCTTTGGGGATTTGGACCTGGTGCTTCA
TTGCCGTTACGACGTGCGGGTGACTCTGCGCAACGTAGCGGTCGTCCCGA
AATTGGTGTTGGATGTCATCTCGTTCAGCGTCATCCAGAAGGCAAAGATA
CCAATACTGCTGGATGAGAGGGGGGCGACGCTGCTCGACGGCAAGGTCAC
CTTCGCCATGCACGAGAACGGTAGTTTTGTCGAGGGTACTCGTGTTCCCC
CCAGTACCCGTTCTCCGCCGGCGCCGATTGTTGCGGCCGTGATGCGGCCG
GGCCGGCCCAAGAGCATGAATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:815698..816019+

>mRNA_P-littoralis_Contig13.160.1 ID=mRNA_P-littoralis_Contig13.160.1|Name=mRNA_P-littoralis_Contig13.160.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig13:815698..816019+ (Pylaiella littoralis U1_48)
GGGGAGTGTCTGCCTGTATCGTGCTTTGGGGATTTGGACCTGGTGCTTCA
TTGCCGTTACGACGTGCGGGTGACTCTGCGCAACGTAGCGGTCGTCCCGA
AATTGGTGTTGGATGTCATCTCGTTCAGCGTCATCCAGAAGGCAAAGATA
CCAATACTGCTGGATGAGAGGGGGGCGACGCTGCTCGACGGCAAGGTCAC
CTTCGCCATGCACGAGAACGGTAGTTTTGTCGAGGGTACTCGTGTTCCCC
CCAGTACCCGTTCTCCGCCGGCGCCGATTGTTGCGGCCGTGATGCGGCCG
GGCCGGCCCAAGAGCATGAAT
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