mRNA_P-littoralis_Contig13.142.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.142.1
Unique NamemRNA_P-littoralis_Contig13.142.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig13.142.1 vs. uniprot
Match: A0A6H5JRX6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRX6_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 2.730e-37
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 1 
Query:    7 MKGLRCHGRNKHGSSRYKDPTGKSSAVVCQEHKTEGMTSCRSKMCEHSGCEKRPSIEFRLENKKRFCFXXXXXXXXXXXXXXXXXXXXTSTANYGHGG 300
            MKGLRCH  NKHGSSRYKDPTGKS+AVVCQEH+T+GMTS + KMCEHSGCEKRPS   RLENKKRFCF XXXXXXXXXXXXXXXXXXX STANYGHGG
Sbjct:    1 MKGLRCHVCNKHGSSRYKDPTGKSTAVVCQEHETKGMTSLKPKMCEHSGCEKRPSFGVRLENKKRFCFRXXXXXXXXXXXXXXXXXXXXSTANYGHGG 98
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JRX6_9PHAE2.730e-3786.73Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:704552..705343 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size300
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789584.7447724-UTR-P-littoralis_Contig13:704551..7045571680789584.7447724-UTR-P-littoralis_Contig13:704551..704557Pylaiella littoralis U1_48UTRP-littoralis_Contig13 704552..704557 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789584.755835-CDS-P-littoralis_Contig13:704557..7046121680789584.755835-CDS-P-littoralis_Contig13:704557..704612Pylaiella littoralis U1_48CDSP-littoralis_Contig13 704558..704612 +
1680789584.766942-CDS-P-littoralis_Contig13:705104..7053431680789584.766942-CDS-P-littoralis_Contig13:705104..705343Pylaiella littoralis U1_48CDSP-littoralis_Contig13 705105..705343 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.142.1prot_P-littoralis_Contig13.142.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 704558..705343 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.142.1

>prot_P-littoralis_Contig13.142.1 ID=prot_P-littoralis_Contig13.142.1|Name=mRNA_P-littoralis_Contig13.142.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=98bp
MKGLRCHGRNKHGSSRYKDPTGKSSAVVCQEHKTEGMTSCRSKMCEHSGC
EKRPSIEFRLENKKRFCFRHAEDGMINLLLKVCAHSGCTSTANYGHGG
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mRNA from alignment at P-littoralis_Contig13:704552..705343+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.142.1 ID=mRNA_P-littoralis_Contig13.142.1|Name=mRNA_P-littoralis_Contig13.142.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=792bp|location=Sequence derived from alignment at P-littoralis_Contig13:704552..705343+ (Pylaiella littoralis U1_48)
AACGAAATGAAGGGGCTGCGCTGTCACGGGCGCAACAAGCATGGATCCTC
TCGCTACAAAGGTGAAGAGTTTGCTAGGTCGCGTTGCAGACTCGTTGTGG
ACAAGTGCAGAGGAAAACGCGGATCATATGCAGCAGTACTTTTTCGCTGA
TGCTGCTGCTTACCAGCTGTTGTGTGTAGCGAAGAAGGCAAGAGACACAG
GTTGAGCGCCACATCAGGTAGCATGATAGCACGCCCCCTGCCTCCCAGCT
CCCGGGATTGTCTTATGCGGCGCAGCAGTTGAACATCTTCGCGTAGTCTA
ACTGCGCTGTGTGGACAGTTACAGTGTGAGGCGGATCAAAGGAGCAGTAC
TGTTCCGCTGATGCTGTTCCTGCTGTGTGTAGCGGGGAAGGCAACCGTGA
GCGCCACAAAGATAGCACAACCCCTTCCCTCCAACGCCCTTGTTTTTGCT
TCGCGGCGCGGCAGTTGGATATCTGCGACAGTATTCCGTGTGCGTAGTCT
AAATGCGCCGCATTTTTTCCGTCGTACCCTGTCCTGCCCCTCGGTTCCTG
CAGACCCAACCGGGAAGTCATCAGCGGTGGTGTGTCAGGAACATAAGACG
GAAGGCATGACCAGTTGTAGATCCAAAATGTGTGAGCACAGTGGGTGTGA
GAAGCGTCCCTCGATTGAGTTTCGACTTGAAAACAAAAAACGGTTTTGTT
TTCGACACGCAGAGGATGGCATGATCAATCTGCTTCTAAAGGTGTGTGCT
CATTCGGGTTGTACTTCAACGGCCAACTACGGGCACGGAGGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:704552..705343+

>mRNA_P-littoralis_Contig13.142.1 ID=mRNA_P-littoralis_Contig13.142.1|Name=mRNA_P-littoralis_Contig13.142.1|organism=Pylaiella littoralis U1_48|type=CDS|length=294bp|location=Sequence derived from alignment at P-littoralis_Contig13:704552..705343+ (Pylaiella littoralis U1_48)
ATGAAGGGGCTGCGCTGTCACGGGCGCAACAAGCATGGATCCTCTCGCTA
CAAAGACCCAACCGGGAAGTCATCAGCGGTGGTGTGTCAGGAACATAAGA
CGGAAGGCATGACCAGTTGTAGATCCAAAATGTGTGAGCACAGTGGGTGT
GAGAAGCGTCCCTCGATTGAGTTTCGACTTGAAAACAAAAAACGGTTTTG
TTTTCGACACGCAGAGGATGGCATGATCAATCTGCTTCTAAAGGTGTGTG
CTCATTCGGGTTGTACTTCAACGGCCAACTACGGGCACGGAGGA
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