mRNA_P-littoralis_Contig13.132.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.132.1
Unique NamemRNA_P-littoralis_Contig13.132.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: D8LP42_ECTSI (EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP42_ECTSI)

HSP 1 Score: 311 bits (797), Expect = 2.480e-103
Identity = 160/274 (58.39%), Postives = 203/274 (74.09%), Query Frame = 1
Query:    1 MALRHRKLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQNDHNMSALTLGEQVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKKSIAVNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRLRSWSGKKRKLVCTAPPAK 822
            M LR+RKL ++AN SCFDLST+LE V ++ P LIY+GIWY+DG V +Y+Q    MS + L + +E  H+ I  IS+Y   G         + +   K I + +DTT VF++PLGKESL+HI+ ++VADLL+PLPG+DVFYKFGLKLYSL QN +FRARKG K  R+CCSRKGWITVP++EA D+I QILV+KT+EAV MF   I   + D+F+ H++SIL +KDS VPEQRKLYERRRNKVLNNIAVSV + L R+  WS KKRKLV  A P +
Sbjct:    1 MVLRNRKLVIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDIMLTKALE-GHMVIEHISTYDAPGGELQEEWRAKPVRGNKKIEIKSDTTAVFVNPLGKESLRHISGNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMHSDSILAYKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 273          
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: Q8QN59_ESV1K (EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN59_ESV1K)

HSP 1 Score: 313 bits (802), Expect = 1.070e-102
Identity = 164/274 (59.85%), Postives = 203/274 (74.09%), Query Frame = 1
Query:    1 MALRHRKLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQNDHNMSALTLGEQVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKKSIAVNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRLRSWSGKKRKLVCTAPPAK 822
            MALR+RKL ++AN SCFDLST+LE V ++ P LIY+GIWY+DG V +Y+Q    MS   L + +E  H+ IV IS+Y             + +   K + V ADTT VF++PLGKESLQHITS++VADLL+PLPG+DVFYKFGLKLYSL QN +FRARKG K  R+CCSRKGWITVP++EA D+I QILV+KT+EAV MF   I   + D+F+ +++SIL  KDS VPEQRKLYERRRNKVLNNIAVSV + L R+  WS KKRKLV  A P +
Sbjct:   99 MALRNRKLAIRANLSCFDLSTILESVRTQCPKLIYLGIWYRDGFVYVYVQGAERMSDTMLTKALE-GHMVIVHISTYDAPVGELQEEWRAKPVRGNKKVEVKADTTAVFVNPLGKESLQHITSNYVADLLRPLPGIDVFYKFGLKLYSLHQNINFRARKGDKNARVCCSRKGWITVPRDEAYDEILQILVEKTREAVSMFRQTIPAYYFDHFDMYSDSILAHKDSAVPEQRKLYERRRNKVLNNIAVSVTDNLCRMGGWSDKKRKLVYKALPTR 371          
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: A0A6H5K0V6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0V6_9PHAE)

HSP 1 Score: 278 bits (710), Expect = 1.940e-90
Identity = 152/272 (55.88%), Postives = 185/272 (68.01%), Query Frame = 1
Query:    1 MALRHRKLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQNDHNMSALTLGEQVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKKSIAVNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRLRSWSGKKRKLVCTAPP 816
            MALR+RKL V+AN SCFDL T+LE V ++ P LIY+GIWY+DG V +Y Q    MS + L + +E  H+   DIS++             + +   K I V A+TT VF+HPLGKESLQH TSDF+ADLL+PLPG+DVF KFGLKLYSL QN +FR RKG K  R+CCSRKGWITVP+EEA D+I QILV+KT+EAV +                   IL +KDS  PEQRKLYERRR  +LNNIAVSV + + R+  WS KKRKLV  APP
Sbjct:    1 MALRNRKLAVRANLSCFDLITILESVRTQCPKLIYLGIWYRDGFVYVYAQGAERMSDIMLAKALE-GHIVFTDISTFDAPISEPQEEWRAKPVCGNKKIEVKANTTAVFVHPLGKESLQHATSDFIADLLRPLPGIDVFNKFGLKLYSLHQNINFRVRKGDKNARVCCSRKGWITVPREEAYDEILQILVKKTREAVSI-------------------ILAYKDSAFPEQRKLYERRR--ILNNIAVSVTDNMRRMSGWSDKKRKLVYKAPP 250          
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: A0A6H5KC66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC66_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 5.690e-62
Identity = 126/269 (46.84%), Postives = 169/269 (62.83%), Query Frame = 1
Query:    1 MALRHRKLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQNDHNMSALTLGE--QVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKK----SIAVNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRLRSWSGKK 789
            MA RHRKL V+A PSC DL  LLEPV++  P L+ + I + DG+V  Y+QN   +S   L    Q+ + H+D+  IS YS        G   +    K+    S    ADT  + ++PLG+ESLQHIT ++V DLLK    + VF+KFGLKLYSL QN +FR RK Y  VR+    K WITV K+EA D+I  +LV+KT EAV M+   +S   +++F      +L+ +DS VPE++KLYE+RRNK L+ IAVSVN RLS+L  W GK+
Sbjct:    1 MAPRHRKLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSI-----IEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDK-WITVSKDEAYDEILFMLVEKTHEAVEMYKDGVSEFDMNHFNMFLPVVLEGRDSSVPERKKLYEKRRNKGLDTIAVSVNARLSQLGRWRGKR 263          
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: A0A6H5JH58_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH58_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 2.730e-56
Identity = 121/263 (46.01%), Postives = 164/263 (62.36%), Query Frame = 1
Query:   19 KLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQNDHNMSALTLGE--QVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKK----SIAVNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRLRSWSGKK 789
            KL V+A PSC DL  LLEPV++  P L+ + I + DG+V  Y+QN   +S   L    Q+ + H+D+  IS YS        G   +    K+    S    ADT  + ++PLG+ESLQHIT ++V DLLK    + VF+KFGLKLYSL QN +FR RK Y  VR+    K WITV K+EA D+I  +LV+KT EAV M+   +S   +++F      +L+ +DSPVPE++KLYE+ RNK L+ IAVSVN RLS+L  W GK+
Sbjct: 2135 KLVVRAEPSCVDLGILLEPVVAILPGLLLLAITFHDGRVCFYMQNTECVSRENLARLTQLFEKHMDVTGISPYSI-----IEGELQEEWRKKRKRASSTGATADTCTILVNPLGEESLQHITREYVVDLLKQTLNVGVFFKFGLKLYSLPQNVNFRTRKYYSDVRVRTKDK-WITVSKDEAYDEILFMLVEKTHEAVEMYRDGVSEFDMNHFNMFLPVVLEGRDSPVPERKKLYEKSRNKGLDTIAVSVNARLSQLGRWRGKR 2391          
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: A0A6H5K135_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K135_9PHAE)

HSP 1 Score: 185 bits (469), Expect = 6.160e-55
Identity = 117/256 (45.70%), Postives = 145/256 (56.64%), Query Frame = 1
Query:    1 MALRHRKLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQNDHNMSALTLGEQVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKKSIAVNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRL 768
            +A+ HRKLRV+A+PSCFDLST+LEPV + +PNLIY+GIW+ DG V +Y+Q+   MS + L   + K H+ I +I+ YS              I    S   + D                   +F+ADLL  L G+DVFYKFG+KLY LEQN +FRARKG K+V                                    SGV+   HID+FEK AESILD KDS VPEQRKLYER RNKVLNNIAV+V + LSRL
Sbjct:    6 VAVHHRKLRVQADPSCFDLSTVLEPVRTEYPNLIYLGIWFHDGSVYVYVQSAERMSDIKLTSAL-KDHMVITNIAPYS--------------IPLLGSCNRSGDPR----------------LEFIADLLNTLHGVDVFYKFGIKLYVLEQNVNFRARKGDKRV------------------------------------SGVLPSCHIDHFEKPAESILDSKDSLVPEQRKLYERMRNKVLNNIAVNVTDNLSRL 194          
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Match: A0A6H5JWA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 1.030e-10
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  316 TGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLEQNASFRA--RKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMFSGVISPGHIDYFE---KHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVNERLSRLRSWSGKKRKLV 801
            T V ++P+GKESL HIT + + +LL    G DV ++FG KLY+LE+N +F+   + G+   RL      W+T  K      + + L    +EAV+ +   I    ++ FE    +   I D ++  +P  RK      N + +N+A    E+L R+   +GKK KL 
Sbjct:  128 TLVIVNPIGKESLDHITPELIQELLAGHHGPDVIFRFGAKLYALEENMNFKTDVKSGFISGRLE-EDSAWVTQRKTVGFSMLLENLKDNFEEAVQTYVDKIPYDDVENFELDMSYIRKIFDLQED-MPVYRKFIRDGFNVLASNMA----EKLRRIERDTGKKLKLT 288          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LP42_ECTSI2.480e-10358.39EsV-1-231 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QN59_ESV1K1.070e-10259.85EsV-1-231 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A6H5K0V6_9PHAE1.940e-9055.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KC66_9PHAE5.690e-6246.84Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JH58_9PHAE2.730e-5646.01Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K135_9PHAE6.160e-5545.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWA4_9PHAE1.030e-1032.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:643789..644619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size831
Hectar predicted targeting categoryother localisation
Exons1
Cds size831
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789584.2898204-CDS-P-littoralis_Contig13:643788..6446191680789584.2898204-CDS-P-littoralis_Contig13:643788..644619Pylaiella littoralis U1_48CDSP-littoralis_Contig13 643789..644619 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.132.1prot_P-littoralis_Contig13.132.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 643789..644619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.132.1

>prot_P-littoralis_Contig13.132.1 ID=prot_P-littoralis_Contig13.132.1|Name=mRNA_P-littoralis_Contig13.132.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=277bp
MALRHRKLRVKANPSCFDLSTLLEPVLSRFPNLIYVGIWYQDGKVLLYIQ
NDHNMSALTLGEQVEKAHVDIVDISSYSYHGRRAARGVAIQAISAKKSIA
VNADTTGVFMHPLGKESLQHITSDFVADLLKPLPGLDVFYKFGLKLYSLE
QNASFRARKGYKKVRLCCSRKGWITVPKEEAKDDIFQILVQKTQEAVRMF
SGVISPGHIDYFEKHAESILDFKDSPVPEQRKLYERRRNKVLNNIAVSVN
ERLSRLRSWSGKKRKLVCTAPPAKPA*
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mRNA from alignment at P-littoralis_Contig13:643789..644619-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.132.1 ID=mRNA_P-littoralis_Contig13.132.1|Name=mRNA_P-littoralis_Contig13.132.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig13:643789..644619- (Pylaiella littoralis U1_48)
ATGGCGCTGCGTCACAGGAAGCTCAGGGTGAAGGCGAACCCATCGTGCTT TGACTTGAGCACCTTGCTGGAACCTGTCCTTTCGAGGTTTCCGAATCTCA TATACGTTGGGATCTGGTATCAGGACGGTAAAGTGCTTCTCTACATACAA AACGATCACAACATGTCAGCTCTCACGCTCGGCGAACAAGTAGAGAAGGC ACATGTAGACATTGTTGATATCTCGTCGTATTCCTACCACGGAAGGCGAG CTGCAAGAGGAGTGGCGATCCAAGCCATTTCCGCAAAGAAGAGCATTGCC GTCAACGCCGACACTACCGGTGTATTTATGCACCCCCTCGGCAAGGAGTC TCTGCAACACATCACGAGTGATTTCGTCGCGGATTTGCTGAAACCCCTTC CTGGACTCGATGTCTTCTACAAATTTGGGTTAAAGCTGTATTCCTTAGAA CAAAACGCCAGCTTCCGGGCACGCAAAGGGTACAAGAAGGTCAGGTTGTG TTGTAGCCGCAAAGGATGGATCACCGTCCCAAAGGAAGAGGCAAAGGACG ACATCTTCCAAATCCTTGTGCAGAAGACCCAGGAAGCTGTACGCATGTTC AGCGGGGTAATCTCGCCTGGCCACATCGATTATTTCGAGAAGCATGCAGA GAGTATCCTTGACTTCAAGGACTCCCCTGTTCCCGAGCAGAGGAAGTTGT ATGAGAGAAGGAGGAATAAGGTGCTTAACAACATCGCTGTCAGCGTAAAC GAGAGGTTGAGCCGGCTGAGAAGCTGGAGCGGCAAGAAGCGCAAGCTCGT CTGCACAGCGCCTCCCGCGAAGCCCGCTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:643789..644619-

>mRNA_P-littoralis_Contig13.132.1 ID=mRNA_P-littoralis_Contig13.132.1|Name=mRNA_P-littoralis_Contig13.132.1|organism=Pylaiella littoralis U1_48|type=CDS|length=831bp|location=Sequence derived from alignment at P-littoralis_Contig13:643789..644619- (Pylaiella littoralis U1_48)
ATGGCGCTGCGTCACAGGAAGCTCAGGGTGAAGGCGAACCCATCGTGCTT
TGACTTGAGCACCTTGCTGGAACCTGTCCTTTCGAGGTTTCCGAATCTCA
TATACGTTGGGATCTGGTATCAGGACGGTAAAGTGCTTCTCTACATACAA
AACGATCACAACATGTCAGCTCTCACGCTCGGCGAACAAGTAGAGAAGGC
ACATGTAGACATTGTTGATATCTCGTCGTATTCCTACCACGGAAGGCGAG
CTGCAAGAGGAGTGGCGATCCAAGCCATTTCCGCAAAGAAGAGCATTGCC
GTCAACGCCGACACTACCGGTGTATTTATGCACCCCCTCGGCAAGGAGTC
TCTGCAACACATCACGAGTGATTTCGTCGCGGATTTGCTGAAACCCCTTC
CTGGACTCGATGTCTTCTACAAATTTGGGTTAAAGCTGTATTCCTTAGAA
CAAAACGCCAGCTTCCGGGCACGCAAAGGGTACAAGAAGGTCAGGTTGTG
TTGTAGCCGCAAAGGATGGATCACCGTCCCAAAGGAAGAGGCAAAGGACG
ACATCTTCCAAATCCTTGTGCAGAAGACCCAGGAAGCTGTACGCATGTTC
AGCGGGGTAATCTCGCCTGGCCACATCGATTATTTCGAGAAGCATGCAGA
GAGTATCCTTGACTTCAAGGACTCCCCTGTTCCCGAGCAGAGGAAGTTGT
ATGAGAGAAGGAGGAATAAGGTGCTTAACAACATCGCTGTCAGCGTAAAC
GAGAGGTTGAGCCGGCTGAGAAGCTGGAGCGGCAAGAAGCGCAAGCTCGT
CTGCACAGCGCCTCCCGCGAAGCCCGCTTGA
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