mRNA_P-littoralis_Contig13.130.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.130.1
Unique NamemRNA_P-littoralis_Contig13.130.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig13.130.1 vs. uniprot
Match: D7FPQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPQ6_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 3.680e-56
Identity = 86/106 (81.13%), Postives = 93/106 (87.74%), Query Frame = 1 
Query:    1 GLTGSPNEHKFEYVEHLNDIALDCRESSLRTSTTKHGNNLHMNRLKRAFWVEGVAGAARKAEEINRLQEPYWNIVRLLPPLPDFVFAFKRFKRPRELPRKLETLQP 318
            G  GSPNE +F YVEHL+DIALDCRES+LRTSTT HGNNLHMNRLKRAF  +GVAGA RKAEEI+R QEPYW IVR+LP LPDFVFAFK  KRPR+LPRKLETLQP
Sbjct:    9 GYKGSPNEQRFGYVEHLDDIALDCRESNLRTSTTSHGNNLHMNRLKRAFRDKGVAGAGRKAEEIDRSQEPYWKIVRVLPALPDFVFAFKLVKRPRDLPRKLETLQP 114
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BLAST of mRNA_P-littoralis_Contig13.130.1 vs. uniprot
Match: A0A6H5JPN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN6_9PHAE)

HSP 1 Score: 179 bits (455), Expect = 7.440e-56
Identity = 87/113 (76.99%), Postives = 95/113 (84.07%), Query Frame = 1 
Query:    4 LTGSPNEHKFEYVEHLNDIALDCRESSLRTSTTKHGNNLHMNRLKRAFWVEGVAGAARKAEEINRLQEPYWNIVRLLPPLPDFVFAFKRFKRPRELPRKLETLQPTGCSSAEQ 342
            +TGSP+EH FEYVEHLN IALDCRES+L TSTT HGNNLHMNR K AFWVEGV GAA KAE +NR QE YWNIVR LPPLPDFVFAFK  KRPR+  RK+ETLQP GC++ EQ
Sbjct:   50 VTGSPDEHGFEYVEHLNGIALDCRESNLMTSTTLHGNNLHMNRSKHAFWVEGVKGAACKAE-VNRSQESYWNIVRRLPPLPDFVFAFKCAKRPRDSSRKVETLQPAGCATNEQ 161
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPQ6_ECTSI3.680e-5681.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPN6_9PHAE7.440e-5676.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:627104..627448 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size345
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789584.2613275-CDS-P-littoralis_Contig13:627103..6274481680789584.2613275-CDS-P-littoralis_Contig13:627103..627448Pylaiella littoralis U1_48CDSP-littoralis_Contig13 627104..627448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.130.1prot_P-littoralis_Contig13.130.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 627104..627448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.130.1

>prot_P-littoralis_Contig13.130.1 ID=prot_P-littoralis_Contig13.130.1|Name=mRNA_P-littoralis_Contig13.130.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
GLTGSPNEHKFEYVEHLNDIALDCRESSLRTSTTKHGNNLHMNRLKRAFW
VEGVAGAARKAEEINRLQEPYWNIVRLLPPLPDFVFAFKRFKRPRELPRK
LETLQPTGCSSAEQ*
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mRNA from alignment at P-littoralis_Contig13:627104..627448-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.130.1 ID=mRNA_P-littoralis_Contig13.130.1|Name=mRNA_P-littoralis_Contig13.130.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig13:627104..627448- (Pylaiella littoralis U1_48)
GGTTTGACAGGCTCGCCCAACGAGCACAAGTTCGAGTACGTCGAGCACCT
TAACGACATTGCCCTAGACTGTCGCGAAAGTAGTTTGAGGACTTCCACTA
CAAAGCATGGTAACAATCTGCACATGAACAGGTTGAAGCGGGCCTTCTGG
GTCGAGGGCGTAGCAGGCGCGGCACGCAAGGCGGAGGAGATAAATCGATT
ACAGGAACCGTACTGGAACATCGTGCGTCTTCTGCCCCCGCTGCCTGATT
TTGTGTTCGCGTTCAAGCGTTTCAAACGGCCGCGAGAATTGCCACGCAAA
CTGGAGACGTTGCAACCTACAGGGTGCTCTTCGGCTGAGCAATGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:627104..627448-

>mRNA_P-littoralis_Contig13.130.1 ID=mRNA_P-littoralis_Contig13.130.1|Name=mRNA_P-littoralis_Contig13.130.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig13:627104..627448- (Pylaiella littoralis U1_48)
GGTTTGACAGGCTCGCCCAACGAGCACAAGTTCGAGTACGTCGAGCACCT
TAACGACATTGCCCTAGACTGTCGCGAAAGTAGTTTGAGGACTTCCACTA
CAAAGCATGGTAACAATCTGCACATGAACAGGTTGAAGCGGGCCTTCTGG
GTCGAGGGCGTAGCAGGCGCGGCACGCAAGGCGGAGGAGATAAATCGATT
ACAGGAACCGTACTGGAACATCGTGCGTCTTCTGCCCCCGCTGCCTGATT
TTGTGTTCGCGTTCAAGCGTTTCAAACGGCCGCGAGAATTGCCACGCAAA
CTGGAGACGTTGCAACCTACAGGGTGCTCTTCGGCTGAGCAATGA
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