mRNA_P-littoralis_Contig13.126.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.126.1
Unique NamemRNA_P-littoralis_Contig13.126.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig13.126.1 vs. uniprot
Match: D8LKS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS3_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.380e-24
Identity = 49/57 (85.96%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:   19 EGEVFFKGGVRRMLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKEL 189
            EGEV F GG+RR LDERRRRL GGSD PSDASSTTD+DLDVQFIRVEKEL+LKTKEL
Sbjct:    2 EGEVSFSGGIRRKLDERRRRLRGGSDNPSDASSTTDQDLDVQFIRVEKELELKTKEL 58
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BLAST of mRNA_P-littoralis_Contig13.126.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.400e-24
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 1 
Query:    4 TKKFKEGEVFFKGGVRRMLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKEL 189
            TKK KEGEV FKGG+RRMLDERR RLSGGSDTPSD SSTTDEDLDV FIRVEKELKL+TKEL
Sbjct:  873 TKKCKEGEVSFKGGIRRMLDERRGRLSGGSDTPSDISSTTDEDLDVHFIRVEKELKLRTKEL 934
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BLAST of mRNA_P-littoralis_Contig13.126.1 vs. uniprot
Match: D8LJ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ26_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 3.480e-17
Identity = 43/45 (95.56%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:   55 MLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKEL 189
            MLDERR RLSGGSDT SDASSTTDEDLDVQFIRVEKELKLKTKEL
Sbjct:    1 MLDERRLRLSGGSDTSSDASSTTDEDLDVQFIRVEKELKLKTKEL 45
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BLAST of mRNA_P-littoralis_Contig13.126.1 vs. uniprot
Match: A0A6H5JH42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH42_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.980e-11
Identity = 36/47 (76.60%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 MTKKFKEGEVFFKGGVRRMLDERRRRLSGGSDTPSDASSTTDEDLDV 141
            MTK  KEGEV     +RRMLDER RRLSGGS+TPSDASSTTDED DV
Sbjct:  274 MTKMSKEGEVSSNRDIRRMLDERPRRLSGGSNTPSDASSTTDEDRDV 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LKS3_ECTSI1.380e-2485.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2A3_9PHAE1.400e-2488.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ26_ECTSI3.480e-1795.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH42_9PHAE1.980e-1176.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:607373..607561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size189
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_005340.1
Cds size189
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789584.091358-CDS-P-littoralis_Contig13:607372..6075611680789584.091358-CDS-P-littoralis_Contig13:607372..607561Pylaiella littoralis U1_48CDSP-littoralis_Contig13 607373..607561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.126.1prot_P-littoralis_Contig13.126.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 607373..607561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.126.1

>prot_P-littoralis_Contig13.126.1 ID=prot_P-littoralis_Contig13.126.1|Name=mRNA_P-littoralis_Contig13.126.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=63bp
MTKKFKEGEVFFKGGVRRMLDERRRRLSGGSDTPSDASSTTDEDLDVQFI
RVEKELKLKTKEL
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mRNA from alignment at P-littoralis_Contig13:607373..607561+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.126.1 ID=mRNA_P-littoralis_Contig13.126.1|Name=mRNA_P-littoralis_Contig13.126.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig13:607373..607561+ (Pylaiella littoralis U1_48)
ATGACAAAGAAGTTCAAGGAGGGTGAAGTGTTTTTCAAGGGGGGCGTCAG
GAGAATGCTGGACGAGAGACGTCGCCGGCTCAGCGGGGGATCAGACACCC
CCTCGGATGCCAGCAGCACGACCGATGAAGACCTTGACGTGCAGTTTATT
CGAGTCGAGAAGGAGCTGAAGTTGAAGACGAAGGAACTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:607373..607561+

>mRNA_P-littoralis_Contig13.126.1 ID=mRNA_P-littoralis_Contig13.126.1|Name=mRNA_P-littoralis_Contig13.126.1|organism=Pylaiella littoralis U1_48|type=CDS|length=189bp|location=Sequence derived from alignment at P-littoralis_Contig13:607373..607561+ (Pylaiella littoralis U1_48)
ATGACAAAGAAGTTCAAGGAGGGTGAAGTGTTTTTCAAGGGGGGCGTCAG
GAGAATGCTGGACGAGAGACGTCGCCGGCTCAGCGGGGGATCAGACACCC
CCTCGGATGCCAGCAGCACGACCGATGAAGACCTTGACGTGCAGTTTATT
CGAGTCGAGAAGGAGCTGAAGTTGAAGACGAAGGAACTC
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