mRNA_P-littoralis_Contig13.122.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.122.1
Unique NamemRNA_P-littoralis_Contig13.122.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig13.122.1 vs. uniprot
Match: A0A6H5K2Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Q9_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 2.970e-48
Identity = 114/217 (52.53%), Postives = 134/217 (61.75%), Query Frame = 2 
Query:  545 EKQMFVPGTKPWVTTIFSVVRQNVFSQGLKGKQPPPLPPPRERPTAARGPSVASAASPA--------------VLVGQAFVHLKSDLMRGIGRSLSLPLSPECFRVDSLQTATPDRLPDGVTIRARFRPLSDATSKCGYINVVLWSGRAVGPTERPTRLFGVLAYGILFLYSKACSQKPPKARLPIYGASVWAKAALLQVLLRLRQPDDAGRTNVQI 1153
              ++FVPGTKPWVT +F+VVRQ++  +  K K  P      +R  AA                          VLVGQA  HL +DL RG  R  SLPLS + F VD+LQ ATPD LP+GVTIRAR  P SD  SKCGYI+V   SGR   PTERP+R FGVLA G+L LYSKA SQKPP+ARL + GASVWAK A   V + L  PDDAGRT+ Q+
Sbjct:  507 NSKIFVPGTKPWVTAVFTVVRQSIPHE-TKEKASPTQ---GKRGRAAXXXXXXXXXXXXXXXXXXXXXXXXXXVLVGQAHAHLNTDLCRGTSRHFSLPLSSQYFPVDTLQVATPDHLPEGVTIRARIGPFSDIASKCGYIHVTFSSGRFNAPTERPSRYFGVLASGVLRLYSKAYSQKPPRARLTLQGASVWAKKAARLVFVSLCTPDDAGRTDFQV 719
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K2Q9_9PHAE2.970e-4852.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:568278..577578 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2824
Hectar predicted targeting categoryother localisation
Exons9
Cds size711
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.122.1prot_P-littoralis_Contig13.122.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 570366..577025 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789583.8404455-UTR-P-littoralis_Contig13:568277..5688071680789583.8404455-UTR-P-littoralis_Contig13:568277..568807Pylaiella littoralis U1_48UTRP-littoralis_Contig13 568278..568807 -
1680789583.8500786-UTR-P-littoralis_Contig13:568889..5703651680789583.8500786-UTR-P-littoralis_Contig13:568889..570365Pylaiella littoralis U1_48UTRP-littoralis_Contig13 568890..570365 -
1680789583.936175-UTR-P-littoralis_Contig13:577471..5775781680789583.936175-UTR-P-littoralis_Contig13:577471..577578Pylaiella littoralis U1_48UTRP-littoralis_Contig13 577472..577578 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789583.8591957-CDS-P-littoralis_Contig13:570365..5703991680789583.8591957-CDS-P-littoralis_Contig13:570365..570399Pylaiella littoralis U1_48CDSP-littoralis_Contig13 570366..570399 -
1680789583.8688908-CDS-P-littoralis_Contig13:571397..5714771680789583.8688908-CDS-P-littoralis_Contig13:571397..571477Pylaiella littoralis U1_48CDSP-littoralis_Contig13 571398..571477 -
1680789583.8779178-CDS-P-littoralis_Contig13:572312..5724201680789583.8779178-CDS-P-littoralis_Contig13:572312..572420Pylaiella littoralis U1_48CDSP-littoralis_Contig13 572313..572420 -
1680789583.8896472-CDS-P-littoralis_Contig13:573240..5733571680789583.8896472-CDS-P-littoralis_Contig13:573240..573357Pylaiella littoralis U1_48CDSP-littoralis_Contig13 573241..573357 -
1680789583.9009864-CDS-P-littoralis_Contig13:574008..5741011680789583.9009864-CDS-P-littoralis_Contig13:574008..574101Pylaiella littoralis U1_48CDSP-littoralis_Contig13 574009..574101 -
1680789583.9126546-CDS-P-littoralis_Contig13:575315..5755371680789583.9126546-CDS-P-littoralis_Contig13:575315..575537Pylaiella littoralis U1_48CDSP-littoralis_Contig13 575316..575537 -
1680789583.9244814-CDS-P-littoralis_Contig13:576968..5770251680789583.9244814-CDS-P-littoralis_Contig13:576968..577025Pylaiella littoralis U1_48CDSP-littoralis_Contig13 576969..577025 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.122.1

>prot_P-littoralis_Contig13.122.1 ID=prot_P-littoralis_Contig13.122.1|Name=mRNA_P-littoralis_Contig13.122.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=237bp
MFVPGTKPWVTTIFSVVRQNVFSQGLKGKQPPPLPPPRERPTAARGPSVA
SAASPAVLVGQAFVHLKSDLMRGIGRSLSLPLSPECFRVDSLQTATPDRL
PDGVTIRARFRPLSDATSKCGYINVVLWSGRAVGPTERPTRLFGVLAYGI
LFLYSKACSQKPPKARLPIYGASVWAKAALLQVLLRLRQPDDAGRTNVQI
HATTLEEVTAWRTRLVSAATDDTPQARIPDALRRGE*
back to top

mRNA from alignment at P-littoralis_Contig13:568278..577578-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.122.1 ID=mRNA_P-littoralis_Contig13.122.1|Name=mRNA_P-littoralis_Contig13.122.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9301bp|location=Sequence derived from alignment at P-littoralis_Contig13:568278..577578- (Pylaiella littoralis U1_48)
TGAACAACAAAGGAGGGACGTCATCGTCTATCAAGCACGGCCTATCCTCT
CCTCCGATCGGCGGGAGTGCTACGGGCGGCGGTGGCAGTGTGGAGTTTAA
CAGCGAGGTAGGACGGGAGTCTGGCGACAAACTACTTGCTTGTTGGTGCT
GCTGCTGCGGTCGTTGGTGGAGGTGGTATGCGGTGCTGCTGTCGGTTGGT
GTTGCTTGGGGAAGATTGGATTCGCACGCACTTTGTGTGTCTCAGCCTCT
CTCGTCGGTATCCACCTCGTGAATCAATCAGCACATTGTCTGTAAAACAA
ATAAGATGGCCAGGAGGTGCTTTTCGCGCGGAGGCGTCGAAAACCAGAAA
CACACGAAAATACGCTCTCTTCATTTCGCCACCAGAAGGCTCTGCCCTGC
TTCCTTTTGTGAAGCCGTATTGCGCGTCTACCGTCATGCAACCATGCCGG
GTTTCAGTCATTGAAAAAATTCCCGTCCCATCTTGCCCCGCGCCTTTTCT
TTTCTCTCGTCGTTTGACCGGACGGACCGGGCTGTGCTTGCCGTGAAAAA
CAGATGTTTGTTCCTGGGACCAAGCCTTGGGTAACAACGATCTTCAGCGT
TGTACGTCAGGTAAACAATACCGCCCCCCCCCCCCCAAACTACAAATATT
CTAGATATATCCACAGCAGAGTGTCATGACAAACGAGAGTAGCGTCGAAA
TGATCTCGTCGATAGCTTCCCGAAAATGGCACGCTTTGTGCCGGCGCTCA
CTTTGCCGCGGAGAAACCAAGATTCGAGACTCGGTTCAGCGGGGGGGTAT
TTTCCACGACGCCATCTACGTCACATACTCGTCAGTGAAAAACCTGACTA
TAGCCCCTTACGGCACTGCAGAGATGCACGTTTATTGGTGTTGTGGACAT
ACGGCAAACGTCACTTGAGTTTTAATGTTTGGCTCTACATCATCATAGCT
CAACGCTATCGTGCTAGGTGGAAAAGAAAAATTCATCTCAGCCAGGCGGC
CCAAGCGTTCACGGCGCTGATTGGGGCTTGTCCCACAGGGCTCGCATACC
GAATCACTCGCTTCCTGGATGTTGGTGAAAGAGTGCGCTATCTATCGGAA
AACCCAAGATGGGGGGGTGGGGGGGTATTGAGTTTTTATGTCATGTAAGG
TTATACCGTCAAGAGGCCCCCCTGTTAAGTGTGTGCTAGGAGCCGGCCGT
TCGCACATACAACATATTTCAAGCTCACTGCTGCGCGAAAGGCAGCGGGA
AGGATATCTCCCTGTGGTCGCCCACAGAACCAGCCCCGCCACTAGTCTCG
GTTACCGCGCCGAATAAAATACGCCGAAGCCAACCCATCCATTGTCATTT
ACTTACGAAAAGCATCGTATTTTTTTATTCCCACCCGAACACCAGTCGCC
CTGGTGGTCTAGTGGTTCCCACGTCGTCACCCTACTAGCAGGAAAGATGC
AGGTTTGATTCTCTCTGAGAGTGTTTTCTTGCAACTTTACGGTGGAAAGC
GATCCGCTCGTGAGTAAGCAGAGGGAAGGGATTGCTGAACACGACTCGAA
TAAAAAACCAAAGGCAAGTACCGAAAGAGGAAAGGTGTGAGCAATAAAAC
AAAAAACTATTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGAGCACCC
ACATCATACCGAAAGGTGTAGACTGCTGCCCAGAATAAATGGTAAGACAC
ACACACACAAACACCCGGCAATGTACACAGCTTCCGCAGATATAAAACAC
ATAATGTGGAGGTGGCCTTTGAAAAGCGTAATAGTGTGACACGAGAAAGT
TATACTCGACATACTTTTTTGTGGAGATGTGATGAACCTGTTCAAATGTC
ACCACCACGATCACGATCATTTTTGCGAAACGACACATGATGCCATTCCC
CTCACCGAGAATGTACACGGAGAGTGCTCTCGCTGATGAGAGGCAGGGCG
GAAATAAGATGGATCCGAAAATAAAATACCTTAAAAATGTATGAATATTC
AATCATTTTTGTATTCGCCCCCTCCCTCGGGCATGGCTCAGAATGTTTTT
TCTCAGGGGCTCAAAGGGAAACAGCCCCCTCCACTGCCACCGCCCAGAGA
GAGGCCAACAGCCGCAAGGGGACCATCAGTGGCATCGGCGGCCTCACCGG
CCGTGCTGGTGGGCCAGGCTTTCGTGCACCTGAAGAGCGACTTGATGAGA
GGAATTGGTCGAAGCCTCTCCCTTCCGTTGTCCCCCGAGTGTTTCAGGGT
CGATTCCTTGCAGGTAGTACGCCATATAGGAGCTAGAAGCCCAGCAGAGC
TGTTGCAGTGATGCCGGTGGTGCTGGACTTCATTCATGATGTGTAGATGG
ATGTTGCTGATGTCGAGAGCTCGCAGATACTGCTGCTGTTGAGAAAACAA
CCTTCTTTCTAAACAACCTTCTGGTGTCACCACTACTTACTGTCAGTGTC
GAGCCTGTAGATTCTTCTGCTTTCCAGAAACAAACCAACGACCCACGGAA
GTGTGTGCTTTTTTCGAGAAAATTCACACAGCAGTCGTCGGGTATCGCGG
AGGTTGCGCGCACGACGAGTTGTACTGATGTACATCTTGCTTTACACTTC
GGGCTCTCACCCGTTGATTATTCTTGTACACCAGTACTACTGTCGTTGAT
GGGGCTCATTTTTCTTGGTAGGTGTAAGCTCCATGTCCCCTCCTCAGGCA
GCCCTACTTTTCCGCGAACTTGCTGTCAATGCTATCGAAGAAAGTAATGA
GTACATTTGCGCTGATCTGAAAACAACACTTCCAAAATTGTTGTTCTAGT
GCGGAAAGCTAGCAAAAGACAAATTTGAATCACGATCATTCGAGGAGCTG
GTTCTGCCAAACGCCTTTGCGACGTTTTGAATTGGGAAATGTTACTTGCT
AGAAACATTTTAACAACTTATTTCTGATGAAACGAGGACGTTTACGACGG
CCAGAAAGTCAGGGGATATTGTGAGCTTGCTGACAATACAAGACAGATAA
AACCCCTTGATGTGTGATCATCGAAAGAGCTTGCCTTACCACTTCCAAAC
ACGTTCACTAGGCAACGATTCAGGACTGGAAATTGCCGTAGCTCATGCCC
CCCAATAACTCTGCGGTTACAGAGGAAGACTAAAGAACCGTCGTACAGCT
ATACGCTGGATACGATCGTGTTGTCGGGCGCGTATAGCACGATCATCGTC
GACGATCTTTTCAATTCTCTTTTGAAACTCCGGTGGACAAAAATGGACGC
ATACCACCTGATCTGATCTAACCCTAACCCTAACCCTAACCAACCCTTGT
CGCTATGAAGCTGTTCGAGAGTAGACACAACTTGAATGCCAGGAGGAATG
AACGTGATTGCTCGAGAAGGTCACGAAACCCCGCCCGCTTCCTCTTACAC
CCCCCCCTTCGGAGATTCTTTGATTCGTTTTTCCGGCACTTGTTTTTTCG
CCATGTTGTATTGACTTCTTTGTTGAGACGGCTACACCAGACCGCTTGCC
AGATGGAGTGACGATCCGAGCAAGGTTTAGACCCCTGAGCGATGCTACCT
CAAAATGCGGCTACATCAATGTAAGTACAAGCGCCAGCAGGATGGTGAAT
ATGATGCCGCGGGATACTAAAAAAGCAGTTATTTCTATTATTCCAATGGG
TACGGCTAAACACATCCTAGATACCCAACGGTGTGATGAGGAAATTCGTT
CGTGCCCCCCCCTCCATTAGTGAATACGAAGTAGTCATCATCAGTGTTGC
TGTTGCTGTTGCTGTTGCTGTTTGTTTTGCTGTTGCCCTTGCCCTTGCCC
TTGCGATTGCCTTCGCTGTGAGTACATCCTGCAAGGGGTTCCCTGTAGAA
CGGCAGACAAAGGAGCACCCCCATCACTCGGAGCAGGATGTAATCAAATC
CGTGATCGGAATGGAAACATCTACTTCGTGCAACAATACGGAAACAAAGT
GCTCTTATGTCATATCCCTCCAGGACTGATCACACTGTTTACTGCGAAAC
ACCGTGGTATTGAATCCATCAAAACGAGGACAGGCCCAAACCTACAAGCA
CATGTAATTGCACCCCCCATCCCCGCGAATCAGTGTCGACCACGGAGCAC
TGTGTACACAGCGCCCCCTTCACAGGGTACGACACACAACAACAACACCA
TCTCGCGCTTTTGGCTTTTGATATTAAACGGCAATAGATTTCAACCCCAA
CTGTTTTTTTGGAACCCACAGGTGGTTTTGTGGTCGGGTCGCGCAGTAGG
CCCAACGGAGAGACCAACAAGATTGTTTGGCGTCCTGGCCTACGGTATCC
TTTTCCTCTACAGCAAAGCTTGCTCTCAGAAGCCTCCGGTGAGAATCCTC
GCTTGTTCGTTCCCTTGCTCGCTGGGATACAGAGCAGTCAGCCGAGAACG
AACAGCCTCAGGCCGTTTTTGCCTACCCCAATGATGGCGAATGTTGTGAA
GTTTGCTCGCTGACAGACATCCTCACTCGCACGAACACGGCAGGAAGCGT
TCGGCAGTTTACCTGCTCAATAAGGAATTATTGTGGGTGCCGGGGAAAAG
CGCACGGGTGTCCTTGGGGGTTCTTCATGTCTACGTAAACAAAATATTCT
CCTACTTCGTCCGACAGATTATGCGACTTGCGTCCACTTCTTTGCAGCAC
ACTCTGCAAAAAATCTCGCCCTTTCTCTGATGTTCCTGTTGTCCATTCAT
CAATTGCTCCTAGCTGTGCCTGAGCAAATCATGAGTAGTACGTGATCGTT
GCTTTTAGCCTGTACGAGAAGCATTTTGTCAATACTTTTGGCTGCAATCA
CCCTCTGAATCGACGAGTTCGATGCACTTCAAGGGGCTAAGGTCCCCGTT
ACACTTCAGCGCATCAAATGAAGTGCAGCCCCCGTTTCAAGCCAAGACAT
TTTCACCGCAGATACCATCCCGGATCGAATGCCATCTCCCCAAGCGCGGA
GTGACTTATTTGAGCTCCTTTTGCCCCGTCAAAGGTCATTTTTTATTTGG
ATGCGTTTCGATCGGTCGAATGAGAAAATTTTCCGTTAACCACGGAAGTG
ATCTGTCACCAGTTGTTTGGAGCAGTGGACATGTATGGAAAAGGGAGGTA
CTGGGTAAAGATCGAAACGGGTTGTAACGCGGCAAAAACAACAACAACAA
CGTTGCAGAAGGCGAGACTCCCGATATATGGGGCCAGCGTATGGGCGAAG
GCAGCCCTCCTGCAAGTGCTCCTGCGCCTGCGTCAGCCTGACGATGCTGG
CAGAACAAACGTCCAGGTGTGTGCGCGCTGTGCTTAAATGTACATCCACA
TTTTCATGTGGATAACAGGCACGGCAGAATATCGACAATAAGAGTATTTT
AACTACGACCATATCGTCGACACGACGTATTGTATGCGCATGTTATGTAT
GTCCGTATGTACATGCATGTATGTCATCGTGCATCGACGTGATGAAATAT
GACGTAATCCTTCGAAAGGAAGGACGTCAAAGTCACCAATCAGTCTTCAC
AAGCAGGCATCATCTGTCACAAGAGAACGGCTGTGAAAGCATCCATCTCT
GCAAACATCATCTGTGATAAAGAAAGCGCGAAAAGAAAGGGCGCTAAAAT
ATTCCACTTCTTGAAGACATACCAGTACTTCATAAGGAAGAGCGTCAAAA
CATACATATTCTCTACTAACGTCGTCACAAGGAAGGGCAAATGCATTTGT
CGTTGCAGACACCAGTATAACAAGGCAAGGTGTGAGAGTATCACCTTTGC
AAACAAGCGCCGTCTATCACAACTCAGGGCGGTAATGCACTCATCTTTGC
AAGCGTCGCTTTTGCAAGGACTACAAAAGCACTCATCTTTGCGTACAACA
GCAGTCCTTTTATCACAAGAAATGTAAGTAAACTCACCCACCTCCGCAAA
CGCCACACGCCACACGCAAGGGTGATGAATGCACCCCATCTCTCCATGTC
AAGCTAAACCACCATGCTTTCATCTTCGTTCATATTTGTTTCATCAGACG
CCAGTTACCACAAACGGAAAGTATGCTAGATTCGCCCGATCTTCGCAAAC
GTCATAACTTATCACATTCACTTTTCTCATCACACAAACGAACTCGTTCA
GATCCATGCGACTACCTTAGAGGAAGTCACGGCCTGGCGGACACGCCTAG
TCTCAGCAGCGACTGATGACACCCCCCAAGCGTGAGTGAGAAACTCATTT
TTTTTAACCATTGGATAATGTGCAGCACTGCTTTGATGTGGTTGTGACAT
GGATATCGTGTGTGTTTATGTCAGAGTGCAATCGTTTACATGTCGCGTGT
GTGAGCGTACAAGTGCGTTTTAAGTCTGCACATTATCGTCGGAAGGCAAG
CAAGAAGATGACGATGACACCGTCACACAGCTTTGCTAACAGACGTGGCG
AGAACCATCCTTTTTTCTCGAACCGCCCTGTGTACTCTGCACTCCCGCGC
TTGCTTTTGGCTCTGCCTGCTCCTGCCTCACTCTGACAAATGGCAGTGCT
CAGCCAAGGTAGAACAGGAGGGTCCATATCCCCAAAAAGTCCCTCCTAGC
TATTCTCTGTGTTGAATTTCATCACGAGAAAGGTTCAGCAGCTCCCTTTC
CCTCATCAACCACGAAGCCATGGCTGCCATGCAGCCCCGGGGATTATTTG
CAGCGAGAGAGATGGCTGGGGCGTGGCTGTCCAGGCCCGATTCCATCGGG
CACCACAGAACGACGGCGTCCCACCATTTTTTGCTTGCCATGGCCCATTG
TTGCGCTCGACGCACTACACGTCGACCTCCTCGAAAAACTCCTTCCACCT
GCTCTCGTTCCCGGCCCGCTAAGTCGAGTTTTGTTTGATCACGAAGGATC
TTGTCTAACCATGACGCGTCTACCACGCACTCGTTTGTCGGGCTTGAGGT
TCTAAGCAATGATCTCCACCATATCCGTAGCGGTACTTGAAATGAAACAC
CACTCGTCCGCAAATAAAAAGCTCACGGTTAGTCACACATGACATTCATC
CACGCCAGGAAGTAGCAAATTCCGTTTAAAAACACCGACTTCATGAAGTT
AAAACACATATCCATGTATTTCGTTGTAGGACATGTGACAGATCTCGCCT
CTCAACCTCATCCCCCTCCTCCACCTCTTGACTGTTTGATGAAACCGTCG
GTTATTTTTCTGTGATCTGTATTTATAAGGCGCATCCCCGATGCGTTACG
GCGCGGCGAGTGATGGGGAGAAAAGCTACACCATCACCGCTCATCATCAT
CGCGATCCGGGACCGCGTGCCACCTGAGCTGTTCACTCCATCCATCCATC
GGTGTTCATTCTCACTCGGAGTCTCGGCTGTATTTGCCTTGCCGAGACCC
GTAAGAGATAGGAGTATACGTGCTGCAACGCTGGCTCAGCCGGGATGAAT
TTCATACATTTTAGGGTTGCAGTGAGCAAGGTTCTCTCGCGTGGCTTACC
TTCAAACTGTACCAGGCACGGCCTTTCCCTGCCTGTTTCACAGGGTTTTC
AAGATCTGGTACCTGCCTTATTCGTAGCTTGAAAAGCAATCATCACGCTG
TTTGTGGTGAGCTTAATTCCATCGAGAAACTCATCTCATGGATATTCTTT
GGCCCTTCTGTTGACATGGCCCTTCTGCGGATATTCCATGGACGCTCCGT
AGACTTTCCGTAGGAGCTCCACCACAATACCCATGCGCGTCTTACGTTAA
GAAACACACAGCTGTTGATGACCACTTCGTGGGAGATTTCCCAAAACAGC
CACACGGACGTCCCATGAGGGTAGTCTCCATGAAATTTCAAATGATATGG
CTGTTCCATGTGATCTCTTTATCGTTCATAGGAGTACCGCCGACGTGGGA
TCTACCGTGCACATTAACGAACCTCCGAAGTATGCCAAGGGATGTTCGAC
ATGCTCATGGAACACCCATCCACCACTTGTCGTGGAAAGCTCGTGACATC
CACGGATGGCCCGCCATGGAACCGTAACCATAGACGTGTCATGGGCAAAA
AAACATTACGACACGACCATGGCCAAATATCATACTCGTACGTCGCGTTC
ATATTTCCAACAAGAAATATGTCGTTCAGAAATCCCCCCGACTAAAAGTT
GTTTGAGACAGCAGCATTTCAAACAGCGGCCTCCGTTTGACGCTCAGTGA
CCTAAAACATCGTACAGAGTACAGGCGATACCGAGCGATGCGGGACGATC
TCGTCAACTTTCAAGAGATCCTATGCCTTTCATCTCCACTTAAGCGAAGC
GGGGTGACGCAAGCACTCTGGTCCATCTCTAATAATAAAGACTTCCCACC
ACGAAGATACGAGATGGTGCTGACCCGGGGGTGAAAGATCACTGTTGCAG
ACAACTGGATTGTCGTGAAGACGGGCCCGTGCTTGTAACGGCCATGGCCA
CCACGAGCCTTTGAATCCTTTTGGGTGTCCTGGATTGGTACAGAGCATGT
GGTCGCAAGCATGATGGGGGTGTAATGCGACAGACGAAAAGGATCGTGAT
CGCAGAAGATTTGGGTCCAATGGAGGGCAGCACGTACGTAGTGCAGGACA
AATGACAGCAAGCACATTGTGTGGGGCGGAAATAATGGAAGTGCCGCTAA
GCTGACGTATGGTGATGTATGCGATACGCAGGAAAAGTTTGTAGCGATTC
AAGGCATGTGTGCAGTTGCAGGGGAAGTGGAGAAAGGTGGCATACACGGT
CGCAGATGTTGGCACGACGAAAGATCATGACAAACTAATATATATGTATG
TATGTATGTATGTACTTCGAGGTCTGTCTGTATGTATGTATGTAGTCTAT
GTATGTATGCAAGTATGCATGTATGAGGTGGAGGTGAAGCAGAATGGGAA
GAGACCGCGCCGAGGTCTTGTGAGAGGTAGCCATGGCACCGACAGCGGTC
TATTTGGCGTGTTTCTTCGAGTGCGTGTATATAGGGTTTGCCTGCTTGGG
AAAGATGAGTGGCAAAGGGCAAGGGCGGTGAATGAATGTGAGGAGGGCGA
TGAGTACGACGGAGTAGAGGCATGGACGGTTGGGTGAGATCGCGTGCGTG
GAGGAATGTGCAAGGTGGGCGTGGGTGAGATCGCGTGCGTGGAGGAATGT
GCAAGGTGGGCGTGGTCGATCTGTTGGGGAGACCACGACGTATAGATATG
GAGTGCAGAGAACCGGACAACACGGTTAAGGTGGCGATGGCCTATAAGGT
TCGGGATGACCAAACTTGACTCCGTGATGTGTTGTGTTGGAAACACATTT
ATTTCGTATCTTCGGGGAGATTTATCTTCATGAACACGTAATCTTTGTCA
C
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig13:568278..577578-

>mRNA_P-littoralis_Contig13.122.1 ID=mRNA_P-littoralis_Contig13.122.1|Name=mRNA_P-littoralis_Contig13.122.1|organism=Pylaiella littoralis U1_48|type=CDS|length=711bp|location=Sequence derived from alignment at P-littoralis_Contig13:568278..577578- (Pylaiella littoralis U1_48)
ATGTTTGTTCCTGGGACCAAGCCTTGGGTAACAACGATCTTCAGCGTTGT
ACGTCAGAATGTTTTTTCTCAGGGGCTCAAAGGGAAACAGCCCCCTCCAC
TGCCACCGCCCAGAGAGAGGCCAACAGCCGCAAGGGGACCATCAGTGGCA
TCGGCGGCCTCACCGGCCGTGCTGGTGGGCCAGGCTTTCGTGCACCTGAA
GAGCGACTTGATGAGAGGAATTGGTCGAAGCCTCTCCCTTCCGTTGTCCC
CCGAGTGTTTCAGGGTCGATTCCTTGCAGACGGCTACACCAGACCGCTTG
CCAGATGGAGTGACGATCCGAGCAAGGTTTAGACCCCTGAGCGATGCTAC
CTCAAAATGCGGCTACATCAATGTGGTTTTGTGGTCGGGTCGCGCAGTAG
GCCCAACGGAGAGACCAACAAGATTGTTTGGCGTCCTGGCCTACGGTATC
CTTTTCCTCTACAGCAAAGCTTGCTCTCAGAAGCCTCCGAAGGCGAGACT
CCCGATATATGGGGCCAGCGTATGGGCGAAGGCAGCCCTCCTGCAAGTGC
TCCTGCGCCTGCGTCAGCCTGACGATGCTGGCAGAACAAACGTCCAGATC
CATGCGACTACCTTAGAGGAAGTCACGGCCTGGCGGACACGCCTAGTCTC
AGCAGCGACTGATGACACCCCCCAAGCGCGCATCCCCGATGCGTTACGGC
GCGGCGAGTGA
back to top