mRNA_P-littoralis_Contig13.75.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.75.1
Unique NamemRNA_P-littoralis_Contig13.75.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig13.75.1 vs. uniprot
Match: A0A6H5KKK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK4_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 1.870e-27
Identity = 66/142 (46.48%), Postives = 90/142 (63.38%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVE 426
            VM KLL   P   GGMP+  +PE+    + +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E  +  R    A D   ++    V  T+E+L +V+ ++F  L NMDQT +Q EMP +TT+E
Sbjct:   97 VMDKLLEMKPDALGGMPANAKPEEALALKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGHEGMAWATVMKLRETLSKRAGE--IYARRHPPAPDESPIK---GVDLTSEQLASVEAEVFEELGNMDQTQVQHEMPVETTLE 233          
BLAST of mRNA_P-littoralis_Contig13.75.1 vs. uniprot
Match: A0A6H5KJN9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 3.260e-27
Identity = 69/142 (48.59%), Postives = 93/142 (65.49%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVE 426
            VM KLL   P   GGMP+  +PE+   F+  FN WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E  +  R    A D   ++ E D+  T+E+L +V+ ++F  L NMDQTP+Q EMP +TT+E
Sbjct:  123 VMNKLLELKPDALGGMPANAKPEEALAFKVNFNPWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGE--IYARRHPPAPDESPIKGE-DL--TSEQLASVKAEVFEELGNMDQTPVQHEMPVETTLE 259          
BLAST of mRNA_P-littoralis_Contig13.75.1 vs. uniprot
Match: A0A6H5JCV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCV1_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.090e-26
Identity = 65/142 (45.77%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVE 426
            VM K+L   P   GGMP+  +PE+   F+ +FN+WY RF KRH  SIRR+TSVGQK P+G+EG AWA + KLR +L + A E +   R   A  +  T   ++    T+E+L +V+ ++F  L NMDQTP+Q EMP +TT++
Sbjct:  222 VMNKVLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRHGSSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGE-IYARRHPPAPDESPTKGEDL----TSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLD 358          
BLAST of mRNA_P-littoralis_Contig13.75.1 vs. uniprot
Match: A0A6H5JAU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU0_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.370e-26
Identity = 65/142 (45.77%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVE 426
            VM KLL   P   GGMP+  +PE+   F+ +FN+WY RF KRH  SIR++TSVGQK P+G+EG AWA + KLR +L + A E +   R   A  +  T   ++    T+E+L +V+ ++F  L NMDQTP+Q EMP +TT++
Sbjct:  168 VMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRHGSSIRQRTSVGQKLPKGYEGMAWATVMKLREALVKRAGE-IYARRHPPAPDESPTKGEDL----TSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLD 304          
BLAST of mRNA_P-littoralis_Contig13.75.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.690e-26
Identity = 68/142 (47.89%), Postives = 94/142 (66.20%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVE 426
            VM KLL   P   GGM +  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E  +  R    A D   ++ E D+  T+E+L +V+ ++F  L NMDQTP+Q EMP +TT+E
Sbjct:  182 VMNKLLELKPDALGGMSTNAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGE--IYARRHPPAPDESPIKGE-DL--TSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLE 318          
BLAST of mRNA_P-littoralis_Contig13.75.1 vs. uniprot
Match: A0A6H5L6D5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.690e-26
Identity = 66/141 (46.81%), Postives = 91/141 (64.54%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVE 426
            M KLL   P   GGMP+  +PE+   F+ +FN+WY  F KR+ FSIRR+TSVGQK P+G+EG A A + KLR +L + A E  +  R    A D   ++ E D+  T+E+L +V+ K+F  L NMDQTP+Q EMP + T+E
Sbjct:    1 MNKLLQLKPDTLGGMPANAKPEEALAFKVKFNSWYQWFRKRNGFSIRRRTSVGQKLPKGYEGVAGATVMKLREALVKRAGE--IYARRHPPAPDESPIKGE-DL--TSEQLASVEAKVFEELGNMDQTPVQHEMPVENTLE 136          
BLAST of mRNA_P-littoralis_Contig13.75.1 vs. uniprot
Match: A0A6H5KMV6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV6_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 2.370e-26
Identity = 65/141 (46.10%), Postives = 88/141 (62.41%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVE 426
            M KLL   P   GGMP+  +PE    F+  FN+WY RF  R+ FSIRR+TSV +K P+G+EG AWA + KLR +L E A E  +  R    A D   ++ E D+  T+E+L +V+  +F  L NMDQ P+Q EMP +TT+E
Sbjct:    1 MNKLLELKPDVLGGMPANAKPEDALAFKIEFNSWYQRFRMRNGFSIRRRTSVDKKLPKGYEGMAWATVMKLREALVERAGE--IYARRHPPAPDESPIKGE-DL--TSEQLASVEADVFEELGNMDQLPVQDEMPVETTLE 136          
BLAST of mRNA_P-littoralis_Contig13.75.1 vs. uniprot
Match: A0A6H5KRF0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 3.280e-26
Identity = 67/142 (47.18%), Postives = 94/142 (66.20%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVE 426
            VM KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSV QK P+G+EG AWA + KLR +L + A E  +  R    A +   ++ E D+  T+E+L +V+ ++F  L NMDQTP+Q EMP +TT+E
Sbjct:  211 VMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVAQKLPKGYEGMAWATVMKLREALVKRAGE--IYARRHPPAPEESPIKGE-DL--TSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLE 347          
BLAST of mRNA_P-littoralis_Contig13.75.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.240e-26
Identity = 67/141 (47.52%), Postives = 93/141 (65.96%), Query Frame = 1
Query:    4 MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVE 426
            M KLL   P   GGMP+  +PE+   F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E  +  R    A D   ++ E D+  T+E+L +V+ ++F  L NMDQTP+Q E+P +TT+E
Sbjct:    1 MNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGE--IYARRHPPAPDESPIKGE-DL--TSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLE 136          
BLAST of mRNA_P-littoralis_Contig13.75.1 vs. uniprot
Match: A0A6H5KFQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ9_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 6.000e-26
Identity = 65/142 (45.77%), Postives = 92/142 (64.79%), Query Frame = 1
Query:    1 VMAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEIEMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVE 426
            V+ KLL   P   GGMP+  +PE+   F+ +FN+WY +F KR+ FSIRR+TSVGQK P+G+EG AWA +  LR +L + A    +  R    A D   ++ E D+  T E+L +V+ ++F  L NMDQTP+Q EMP +TT+E
Sbjct:  186 VINKLLQLKPDALGGMPANAKPEEALAFKIKFNSWYQQFRKRNGFSIRRRTSVGQKLPKGYEGTAWATVMNLREALVQRA--GAIHARRNPPAPDESPIKGE-DL--TCEQLASVEAEVFEELGNMDQTPVQHEMPVETTLE 322          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.75.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKK4_9PHAE1.870e-2746.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJN9_9PHAE3.260e-2748.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCV1_9PHAE1.090e-2645.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU0_9PHAE1.370e-2645.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRZ8_9PHAE1.690e-2647.89DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5L6D5_9PHAE1.690e-2646.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMV6_9PHAE2.370e-2646.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRF0_9PHAE3.280e-2647.18DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE5.240e-2647.52DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KFQ9_9PHAE6.000e-2645.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:381928..382353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size428
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000374
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size423
COG categoryCH
BRITEko00000,ko03000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789582.8804872-UTR-P-littoralis_Contig13:381927..3819301680789582.8804872-UTR-P-littoralis_Contig13:381927..381930Pylaiella littoralis U1_48UTRP-littoralis_Contig13 381928..381930 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789582.8942168-CDS-P-littoralis_Contig13:381930..3823531680789582.8942168-CDS-P-littoralis_Contig13:381930..382353Pylaiella littoralis U1_48CDSP-littoralis_Contig13 381931..382353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.75.1prot_P-littoralis_Contig13.75.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 381931..382353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.75.1

>prot_P-littoralis_Contig13.75.1 ID=prot_P-littoralis_Contig13.75.1|Name=mRNA_P-littoralis_Contig13.75.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MAKLLSEMPTFSGGMPSQDEPEKMEKFQKRFNAWYYRFLKRHRFSIRRKT
SVGQKKPEGWEGKAWAFIQKLRSSLREHAQEAVLLERAAQAAKDGGTVEI
EMDVIATAEELLAVQGKIFALLYNMDQTPIQAEMPPDTTVE
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mRNA from alignment at P-littoralis_Contig13:381928..382353+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.75.1 ID=mRNA_P-littoralis_Contig13.75.1|Name=mRNA_P-littoralis_Contig13.75.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=426bp|location=Sequence derived from alignment at P-littoralis_Contig13:381928..382353+ (Pylaiella littoralis U1_48)
GTCATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCC GTCCCAAGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACG CCTGGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAG ACGAGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGC ATTCATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCG TTCTCTTGGAGAGGGCAGCCCAGGCAGCGAAGGACGGAGGGACCGTTGAG ATCGAGATGGACGTCATCGCAACTGCGGAGGAACTTCTGGCTGTTCAGGG CAAGATCTTCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTG AGATGCCGCCGGACACCACGGTGGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:381928..382353+

>mRNA_P-littoralis_Contig13.75.1 ID=mRNA_P-littoralis_Contig13.75.1|Name=mRNA_P-littoralis_Contig13.75.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig13:381928..382353+ (Pylaiella littoralis U1_48)
ATGGCCAAGCTTCTCTCCGAGATGCCAACCTTTTCAGGGGGCATGCCGTC
CCAAGACGAGCCGGAGAAGATGGAAAAATTTCAGAAGCGTTTCAACGCCT
GGTACTACAGGTTCCTCAAGAGGCACCGGTTCTCGATCCGACGCAAGACG
AGCGTGGGGCAGAAGAAGCCGGAAGGATGGGAGGGCAAGGCGTGGGCATT
CATCCAGAAGCTTCGCTCAAGCCTGCGTGAGCACGCGCAGGAAGCCGTTC
TCTTGGAGAGGGCAGCCCAGGCAGCGAAGGACGGAGGGACCGTTGAGATC
GAGATGGACGTCATCGCAACTGCGGAGGAACTTCTGGCTGTTCAGGGCAA
GATCTTCGCCCTTCTGTACAACATGGACCAGACCCCGATCCAGGCTGAGA
TGCCGCCGGACACCACGGTGGAG
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