mRNA_P-littoralis_Contig13.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.36.1
Unique NamemRNA_P-littoralis_Contig13.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig13.36.1 vs. uniprot
Match: D7FLY0_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY0_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 1.380e-69
Identity = 111/151 (73.51%), Postives = 127/151 (84.11%), Query Frame = 1 
Query:    1 MPKPGSKFNGRLKNAARAVTSALNKESREA-ADGDRSVKVPTEAEMHSLTSAMDSDRTGKIEFGCFFSAMAAFLKPQYGREMLDEAFDEISGGQDEIDSNSLQRTMIHLGQSTIRFADCETMICEVDRQGRGRISREDFFHHLQTCATDNI 450
            M   G++ N RLKNAARAV+SALNK+SREA ADGD   KVPT+AE+ SLTS MDSD+TGK++FG FF+AMAAF+KP+YGRE LD AFDEISGG DEID+  L RTM+HLGQSTIR+ADCE MICEVDR G GRIS+ DF HHLQTC TDNI
Sbjct:    1 MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTKAELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKPKYGREKLDRAFDEISGGLDEIDATFLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDF-HHLQTCTTDNI 150
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BLAST of mRNA_P-littoralis_Contig13.36.1 vs. uniprot
Match: A0A835YZ87_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ87_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.030e-16
Identity = 44/114 (38.60%), Postives = 64/114 (56.14%), Query Frame = 1 
Query:  109 VKVPTEAEMHSLTSAMDSDRTGKIEFGCFFSAMAAFLKPQYGREMLDEAFDEISG------GQDEIDSNSLQRTMIH-LGQSTIRFADCETMICEVDRQGRGRISREDFFHHLQ 429
            +++PT  E+  + + MD D+TG I+F  FFS +A  LKP Y  +ML+ AF  I G        D + S    R  +H LGQ  +   DC+ ++ E+DR GRG +SR DF   +Q
Sbjct:    1 MQIPTAQELEDMKAGMDPDKTGHIDFPSFFSVLAISLKPVYSEKMLNSAFAHIVGVPESAISDDTVLSRGQLRACMHRLGQVRLSLDDCDDIVREMDRTGRGAVSRADFVQAMQ 114
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLY0_ECTSI1.380e-6973.51EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YZ87_9STRA1.030e-1638.60EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:191737..194315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog218851.Aquca_049_00129.1
PFAMsEF-hand_1
Model size610
Max annot lvl35493|Streptophyta
KEGG koko:K02183,ko:K13448
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.91e-08
EggNOG OGsCOG5126@1|root,KOG0027@2759|Eukaryota,37TRC@33090|Viridiplantae,3GI7D@35493|Streptophyta
Descriptioncalmodulin-like protein
Cds size453
COG categoryT
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789581.7925382-UTR-P-littoralis_Contig13:191736..1918931680789581.7925382-UTR-P-littoralis_Contig13:191736..191893Pylaiella littoralis U1_48UTRP-littoralis_Contig13 191737..191893 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789581.8073304-CDS-P-littoralis_Contig13:191893..1920741680789581.8073304-CDS-P-littoralis_Contig13:191893..192074Pylaiella littoralis U1_48CDSP-littoralis_Contig13 191894..192074 -
1680789581.8168018-CDS-P-littoralis_Contig13:192499..1926571680789581.8168018-CDS-P-littoralis_Contig13:192499..192657Pylaiella littoralis U1_48CDSP-littoralis_Contig13 192500..192657 -
1680789581.8296986-CDS-P-littoralis_Contig13:194201..1943151680789581.8296986-CDS-P-littoralis_Contig13:194201..194315Pylaiella littoralis U1_48CDSP-littoralis_Contig13 194202..194315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.36.1prot_P-littoralis_Contig13.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 191894..194315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.36.1

>prot_P-littoralis_Contig13.36.1 ID=prot_P-littoralis_Contig13.36.1|Name=mRNA_P-littoralis_Contig13.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=151bp
MPKPGSKFNGRLKNAARAVTSALNKESREAADGDRSVKVPTEAEMHSLTS
AMDSDRTGKIEFGCFFSAMAAFLKPQYGREMLDEAFDEISGGQDEIDSNS
LQRTMIHLGQSTIRFADCETMICEVDRQGRGRISREDFFHHLQTCATDNI
*
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mRNA from alignment at P-littoralis_Contig13:191737..194315-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.36.1 ID=mRNA_P-littoralis_Contig13.36.1|Name=mRNA_P-littoralis_Contig13.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2579bp|location=Sequence derived from alignment at P-littoralis_Contig13:191737..194315- (Pylaiella littoralis U1_48)
ATGCCAAAACCTGGTTCTAAGTTCAACGGCAGGCTTAAAAATGCTGCCCG
CGCCGTTACATCCGCGTTGAACAAGGAAAGTCGCGAGGCCGCAGATGGTG
ATCGCTCGGTAAAAGTCAAGGTACGGATATCAAACAACCGCAGTGATACT
TGTACACTTCGAAGTATTAAGATTACATACTGCACGACTTCGTACAGCGG
TACCCCAGAGCCCTCTTGCAGCACTGCATGCACATTCCGCTCTAGTTAGC
TGGCTGTAGTAAGCTGCGTACAGTCAGGAAAATTGAGGTTAGCGCGGACC
AACCCCCGAATTTTCCCTGCTGTCTTCCCTAGCGCTGCTACTCCTTCCAT
TGCAACTGCGTTTGACAGACCAGTAGCGTCCTCATCCACCAAACAGAGCG
AAGGCGGTTCAAAATGATACGCCGAAAGGATCAATAATATTTCTTGTGCA
AGTATTAGCATGAATGCCATCGTGGCCGTCTCTTGAGAAAACCTTTGAAA
TATCAAGGAAACAACGTCGTCCATCTGGGACGGGACTCAACCAGTGGGAT
AGACCGGGTAAACCTTTGAATTCCTTACGCGCAGAGGTTTTCTCACAACA
GTAATCAGCTGGTCGACCATTGAACTATAAACGCCTTGTACGGGTACCTG
GTGTGTTGTCATGGTCAGGATCTTGTTTTTTCAAGTGTTGATGAAACTTC
AAAATGTATAACGTATACTCCGGATTATTATAGAGTCCCCTGCGTAAGTC
TGCTGTACAGCCAGTCAGTAGGAAAACAGCATCAAGTCCGGGGGGAAGGT
TCTTCATTTTTACATATACATAAATACCGCAAAGTGTATCGTAGGAAACG
ACATGATGGATAAAACATCGAGTCGATGTGCGTTTGCTCGCCGTTTTTGC
CGTGGCCGAATGTGATGAACTTTGAGAAGCAGAACCCTCAACTTTTGTTC
AGCGAGTTGGAGGTGGACCGACTGAAGGTCGCCTTCGACATGCACGCCGA
AGGGGACGAAAACGTCACTTACGTGGAAAACCTGGATGATCTTCTCAAGA
CTCTGTTCATTGTCAGTCAAACCACAACAAAAAACCAAAGCAGTGAAGCG
GTGGTATCCTTCCAAACGTAGACGACCAGTACACAGCAAAGCAGTAGTAC
GTGTGGTCGACGAAAAACTTCGGGGGCAGTACGCAGCATGCTGCTTGCGT
TCTCGCGCTAGGCGGAAGAGGTGTTGCTCATCATTTGGCTTGCACAGTTC
TGTTCCGGATGACCTATCGGCCGGGCTCAGGTTCAAGCTCAGTTTTGAAT
TGAAGGCCAAAAGTGGTTCAATTAGACACTACAGTTTAGTAGCAGACGGA
TATAAGGATGTTTCCTGATCGGTTCAACCATTATTTCGTGTCACGAGCTG
GAATTACTGCACTGTAAAGTCATAAGGCATGATTTCTGCTGTCTGTGTAC
ACTTGTTCTGTAGTACACATACAGTACTTGTACATACTCCGGAGTACCTC
TTTTTTGCTGGGTGTTTGACGTGTGCAACCTTTATGTCGCTGGTTCTTTC
GTGATTTTTTACCAAAAACATTGACGTGCGAGAGTAAATGCTCACGAAAC
GCACGGCACGGATGGGCCGGGTATGCTCGTCGAAATTTTTCATGCGGAAC
GTGTGTAGGTGCCTACCGAGGCAGAAATGCACTCGCTAACTTCCGCGATG
GATTCGGACAGAACGGGCAAGATCGAGTTCGGGTGTTTCTTCTCTGCCAT
GGCTGCCTTCTTGAAGCCGCAGTACGGACGGGAAATGCTGGACGAAGCTT
TTGACGAAATATCTGGGTGAGCCTGCTGCAGGAAAAGTCACACATTTGCA
CATGCTTTACGGGAAAATATTACAGGAGTGTCGAGGGTGTGAGCGTGCAA
GAAGTCACTTCGACTCATTCATGACGGATTGATGAAGTCTACGGGAACAC
GAGACTCATCGGAAGCTTTTCGATGAGAGCGCACGCACTCCGCAAAATAC
AGGACACTTTCAACGATCAAGTCAGAACCTGTTCATCCCCTGCCAATCAC
TGCTGTCTGTACTCTTGTCACCCGAGACGAATAATGTTCCTGAATCAAGG
CGGCGAGCATTTGTACGCCGTTGGTGACCACGTATGTATGCGCAAGAATG
ATAGGAGCGTGCACAACAATTAATTTAAGGTTTTTACTTAATTTCCAGAC
TTCCTTCTCAGCACCACTTTGTTGCAACCGTTTGCGTTCAGGGGGCAGGA
TGAAATCGACAGCAACTCTCTCCAGCGAACAATGATCCACCTGGGACAGT
CCACGATTCGCTTTGCCGACTGCGAAACAATGATCTGCGAGGTGGATCGG
CAGGGGCGCGGACGCATATCGAGGGAAGACTTTTTCCACCACCTCCAGAC
CTGCGCCACCGACAACATATGAGCATGTCGAGTCTCATAGTATGATATGT
CTCCGTAAGCAATACTATAGAGTACTTCGAAAGTGTACATAGCTTACATT
ACCCCCTGACCCGATTCTCCAAGCTCGACTACTCCCCTCACGTATTTGGC
TGTAACTGTCAAACGAAAGAATTTCGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:191737..194315-

>mRNA_P-littoralis_Contig13.36.1 ID=mRNA_P-littoralis_Contig13.36.1|Name=mRNA_P-littoralis_Contig13.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig13:191737..194315- (Pylaiella littoralis U1_48)
ATGCCAAAACCTGGTTCTAAGTTCAACGGCAGGCTTAAAAATGCTGCCCG
CGCCGTTACATCCGCGTTGAACAAGGAAAGTCGCGAGGCCGCAGATGGTG
ATCGCTCGGTAAAAGTGCCTACCGAGGCAGAAATGCACTCGCTAACTTCC
GCGATGGATTCGGACAGAACGGGCAAGATCGAGTTCGGGTGTTTCTTCTC
TGCCATGGCTGCCTTCTTGAAGCCGCAGTACGGACGGGAAATGCTGGACG
AAGCTTTTGACGAAATATCTGGGGGGCAGGATGAAATCGACAGCAACTCT
CTCCAGCGAACAATGATCCACCTGGGACAGTCCACGATTCGCTTTGCCGA
CTGCGAAACAATGATCTGCGAGGTGGATCGGCAGGGGCGCGGACGCATAT
CGAGGGAAGACTTTTTCCACCACCTCCAGACCTGCGCCACCGACAACATA
TGA
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