mRNA_P-littoralis_Contig13.181.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.181.1
Unique NamemRNA_P-littoralis_Contig13.181.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig13.181.1 vs. uniprot
Match: A0A6H5K9R4_9PHAE (Eukaryotic translation initiation factor 4C n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R4_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 4.230e-10
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 3 
Query:    3 RGKMRKKVWVSAGDIVLVGKRDYQDDKAS 89
            RGKMRKKVWVSAGDIVLVGKRDYQDDKAS
Sbjct:   22 RGKMRKKVWVSAGDIVLVGKRDYQDDKAS 50
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BLAST of mRNA_P-littoralis_Contig13.181.1 vs. uniprot
Match: D7FLZ6_ECTSI (Eukaryotic translation initiation factor 4C n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ6_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 3.780e-8
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 3 
Query:    3 RGKMRKKVWVSAGDIVLVGKRDYQDDK 83
            RGKMRKKVWVSAGDIVLVGKRDYQDDK
Sbjct:   62 RGKMRKKVWVSAGDIVLVGKRDYQDDK 88
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BLAST of mRNA_P-littoralis_Contig13.181.1 vs. uniprot
Match: UPI000D628F87 (eukaryotic translation initiation factor 1A-like n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=UPI000D628F87)

HSP 1 Score: 60.1 bits (144), Expect = 4.180e-8
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 3 
Query:    3 RGKMRKKVWVSAGDIVLVGKRDYQDDKASD*LFAPPGLTAVLRYFR 140
            RGKM KKVW+SAGDI+LVG RDYQDDKA            +LRYFR
Sbjct:   62 RGKMHKKVWISAGDIILVGLRDYQDDKAD----------VILRYFR 97
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BLAST of mRNA_P-littoralis_Contig13.181.1 vs. uniprot
Match: A0A7S3A004_9RHOD (Eukaryotic translation initiation factor 4C n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A004_9RHOD)

HSP 1 Score: 57.0 bits (136), Expect = 2.330e-7
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:    3 RGKMRKKVWVSAGDIVLVGKRDYQDDKASD*LFAPPGLTAVLRYFRQV 146
            RGKMRKKVWV+ GDIVL+G RD+QD KA   L   P     L+++R++
Sbjct:   24 RGKMRKKVWVNTGDIVLIGLRDFQDQKADIILKYSPDEARSLKHYREI 71
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BLAST of mRNA_P-littoralis_Contig13.181.1 vs. uniprot
Match: A0A7S2UW94_9STRA (Eukaryotic translation initiation factor 4C n=2 Tax=Ochrophyta TaxID=2696291 RepID=A0A7S2UW94_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.800e-7
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 3 
Query:    3 RGKMRKKVWVSAGDIVLVGKRDYQDDK 83
            RGKMRKKVWVSAGDIVLVG RDYQDDK
Sbjct:   62 RGKMRKKVWVSAGDIVLVGLRDYQDDK 88
[Close]
BLAST of mRNA_P-littoralis_Contig13.181.1 vs. uniprot
Match: A0A7J6V527_THATH (Eukaryotic translation initiation factor 4C n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6V527_THATH)

HSP 1 Score: 55.8 bits (133), Expect = 6.610e-7
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:    3 RGKMRKKVWVSAGDIVLVGKRDYQDDKASD*LFAPPGLTAVLRYFRQV 146
            RGKM KKVW++AGDI+LVG RDYQDDKA   L   P    +L+ + ++
Sbjct:   22 RGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGEL 69
[Close]
BLAST of mRNA_P-littoralis_Contig13.181.1 vs. uniprot
Match: A0A6D2I3P1_9BRAS (Eukaryotic translation initiation factor 4C n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2I3P1_9BRAS)

HSP 1 Score: 55.8 bits (133), Expect = 6.910e-7
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:    3 RGKMRKKVWVSAGDIVLVGKRDYQDDKASD*LFAPPGLTAVLRYFRQV 146
            RGKM KKVW+SAGDIVLVG RD+QDDKA   L   P    +L+ + ++
Sbjct:   22 RGKMHKKVWISAGDIVLVGLRDFQDDKADIILKFMPDEARLLKAYGEL 69
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BLAST of mRNA_P-littoralis_Contig13.181.1 vs. uniprot
Match: K7WU37_SOLTU (Translation initiation factor 1A (Fragment) n=1 Tax=Solanum tuberosum TaxID=4113 RepID=K7WU37_SOLTU)

HSP 1 Score: 55.8 bits (133), Expect = 8.090e-7
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 3 
Query:    3 RGKMRKKVWVSAGDIVLVGKRDYQDDKASD*LFAPPGLTAVLRYF 137
            RGKM KKVW++AGDIVLVG RDYQDDKA   L   P    +L+ +
Sbjct:   31 RGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMPDEARLLKAY 75
[Close]
BLAST of mRNA_P-littoralis_Contig13.181.1 vs. uniprot
Match: I1NCH3_SOYBN (S1-like domain-containing protein n=1 Tax=Glycine max TaxID=3847 RepID=I1NCH3_SOYBN)

HSP 1 Score: 55.8 bits (133), Expect = 8.450e-7
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:    3 RGKMRKKVWVSAGDIVLVGKRDYQDDKASD*LFAPPGLTAVLRYFRQV 146
            RGKM KKVW++AGDI+LVG RDYQDDKA   L   P    +L+ + ++
Sbjct:   32 RGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGEL 79
[Close]
BLAST of mRNA_P-littoralis_Contig13.181.1 vs. uniprot
Match: A0A7S2W5L0_9STRA (Eukaryotic translation initiation factor 4C n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W5L0_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 9.400e-7
Identity = 28/48 (58.33%), Postives = 34/48 (70.83%), Query Frame = 3 
Query:    3 RGKMRKKVWVSAGDIVLVGKRDYQDDKASD*LFAPPGLTAVLRYFRQV 146
            RGKMRKKVWV+AGDIVLVG RDYQD+KA   L   P     L+ + ++
Sbjct:   61 RGKMRKKVWVAAGDIVLVGLRDYQDNKADVILKYQPDEARNLKSYGEI 108
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.181.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K9R4_9PHAE4.230e-10100.00Eukaryotic translation initiation factor 4C n=1 Ta... [more]
D7FLZ6_ECTSI3.780e-8100.00Eukaryotic translation initiation factor 4C n=1 Ta... [more]
UPI000D628F874.180e-863.04eukaryotic translation initiation factor 1A-like n... [more]
A0A7S3A004_9RHOD2.330e-754.17Eukaryotic translation initiation factor 4C n=1 Ta... [more]
A0A7S2UW94_9STRA3.800e-796.30Eukaryotic translation initiation factor 4C n=2 Ta... [more]
A0A7J6V527_THATH6.610e-754.17Eukaryotic translation initiation factor 4C n=1 Ta... [more]
A0A6D2I3P1_9BRAS6.910e-756.25Eukaryotic translation initiation factor 4C n=1 Ta... [more]
K7WU37_SOLTU8.090e-760.00Translation initiation factor 1A (Fragment) n=1 Ta... [more]
I1NCH3_SOYBN8.450e-754.17S1-like domain-containing protein n=1 Tax=Glycine ... [more]
A0A7S2W5L0_9STRA9.400e-758.33Eukaryotic translation initiation factor 4C n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:939966..940574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size609
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789580.3556395-UTR-P-littoralis_Contig13:939965..9401171680789580.3556395-UTR-P-littoralis_Contig13:939965..940117Pylaiella littoralis U1_48UTRP-littoralis_Contig13 939966..940117 +
1680789580.3804328-UTR-P-littoralis_Contig13:940468..9405741680789580.3804328-UTR-P-littoralis_Contig13:940468..940574Pylaiella littoralis U1_48UTRP-littoralis_Contig13 940469..940574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789580.3658986-CDS-P-littoralis_Contig13:940117..9404681680789580.3658986-CDS-P-littoralis_Contig13:940117..940468Pylaiella littoralis U1_48CDSP-littoralis_Contig13 940118..940468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.181.1prot_P-littoralis_Contig13.181.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 940118..940468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.181.1

>prot_P-littoralis_Contig13.181.1 ID=prot_P-littoralis_Contig13.181.1|Name=mRNA_P-littoralis_Contig13.181.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=117bp
MLHHSPPHVYFVHARATSLTTPVMPPRQTLPRGPIAPLVYRTRRKKRFGA
LACGGGIIMSLRPIVGCVSFEFYRIVTVSCWNSLDFHRIPPHLTASCLSP
LESHRVPTAACYLKCV*
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mRNA from alignment at P-littoralis_Contig13:939966..940574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.181.1 ID=mRNA_P-littoralis_Contig13.181.1|Name=mRNA_P-littoralis_Contig13.181.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=609bp|location=Sequence derived from alignment at P-littoralis_Contig13:939966..940574+ (Pylaiella littoralis U1_48)
TCCGGGGGAAAATGCGCAAGAAGGTTTGGGTCAGCGCCGGAGACATCGTG
CTCGTCGGCAAGAGGGACTATCAAGACGACAAGGCAAGCGATTGATTGTT
TGCACCGCCCGGACTGACTGCTGTACTGCGGTACTTTCGTCAAGTGCGTT
TCATGCTTCATCACAGCCCACCGCATGTGTATTTCGTACACGCTCGAGCG
ACATCCCTCACCACACCTGTCATGCCGCCTCGTCAAACTCTGCCGCGCGG
ACCAATAGCACCGCTTGTGTATAGGACCCGTCGAAAGAAACGTTTTGGTG
CGCTGGCGTGCGGTGGAGGGATTATCATGAGCTTGCGCCCTATCGTAGGA
TGCGTGTCGTTCGAATTCTACCGCATCGTCACCGTGTCATGTTGGAACTC
GTTGGATTTTCATCGAATTCCGCCGCATCTTACCGCATCGTGCCTGAGCC
CGTTGGAATCCCATCGAGTTCCCACCGCTGCATGTTACCTTAAATGTGTG
TGATACGAACCGTTGAATGTGTGGTGTAATAGTGCTTATGCTTGCATGTC
CCCAACACGAGTCCCGCAAAAATCTACCCCATTTTTTTCCACAAGTATAC
ACGAACCCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:939966..940574+

>mRNA_P-littoralis_Contig13.181.1 ID=mRNA_P-littoralis_Contig13.181.1|Name=mRNA_P-littoralis_Contig13.181.1|organism=Pylaiella littoralis U1_48|type=CDS|length=351bp|location=Sequence derived from alignment at P-littoralis_Contig13:939966..940574+ (Pylaiella littoralis U1_48)
ATGCTTCATCACAGCCCACCGCATGTGTATTTCGTACACGCTCGAGCGAC
ATCCCTCACCACACCTGTCATGCCGCCTCGTCAAACTCTGCCGCGCGGAC
CAATAGCACCGCTTGTGTATAGGACCCGTCGAAAGAAACGTTTTGGTGCG
CTGGCGTGCGGTGGAGGGATTATCATGAGCTTGCGCCCTATCGTAGGATG
CGTGTCGTTCGAATTCTACCGCATCGTCACCGTGTCATGTTGGAACTCGT
TGGATTTTCATCGAATTCCGCCGCATCTTACCGCATCGTGCCTGAGCCCG
TTGGAATCCCATCGAGTTCCCACCGCTGCATGTTACCTTAAATGTGTGTG
A
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