mRNA_P-littoralis_Contig13.143.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.143.1
Unique NamemRNA_P-littoralis_Contig13.143.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:733620..734464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size845
Hectar predicted targeting categoryother localisation
Exons1
Cds size432
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789580.3140912-UTR-P-littoralis_Contig13:733619..7340321680789580.3140912-UTR-P-littoralis_Contig13:733619..734032Pylaiella littoralis U1_48UTRP-littoralis_Contig13 733620..734032 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789580.3248856-CDS-P-littoralis_Contig13:734032..7344641680789580.3248856-CDS-P-littoralis_Contig13:734032..734464Pylaiella littoralis U1_48CDSP-littoralis_Contig13 734033..734464 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.143.1prot_P-littoralis_Contig13.143.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 734033..734464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.143.1

>prot_P-littoralis_Contig13.143.1 ID=prot_P-littoralis_Contig13.143.1|Name=mRNA_P-littoralis_Contig13.143.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MPQQHRKRRLSNCKKFSRRENYSDGSFRGCRIRRGLHVLEDKRTIPRYRC
SRFKSLGVARKTYSGMPTALSLGRRRRHGGSLRQKRGVVEEISSRLESQK
KKNNRNRLGLLERYIPGCLQRCRLDAAVDSGVASTESGIVGEIS
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mRNA from alignment at P-littoralis_Contig13:733620..734464+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.143.1 ID=mRNA_P-littoralis_Contig13.143.1|Name=mRNA_P-littoralis_Contig13.143.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=845bp|location=Sequence derived from alignment at P-littoralis_Contig13:733620..734464+ (Pylaiella littoralis U1_48)
TCACGACGACGAGATCACCGTCTACTATCCTCAGCCTCTGCACTTGGCTG
CTTCGTCCACCCGGTACTACCTTCGGAAATACCTGAACAGGGACGGGACA
ACTTTGGATTGGAGAAGACAACAGGAAACAACAAGGCCTCAACACCACTT
CGAGAGGGTACGAGGAAAGGACAAGGGCATCATCTCAACGAGCAAGGGAG
GATAGCATCCACAAAACCGCTGAAAAATGCAAGACGCTAACAACAGTAGC
AGCGACATCATCAGCACTCTGAGGGGCATGAAGACCTTTAGTGGAGATAT
TCCTGCGGATTTCCACCATTGGTTCAAGAAACTTAGCCTCGTCATCAGCA
TCAAGCGTCCTGATATCTTCGACATCATCGAGGGATGCGAGAAACCAGAA
TCGGCGAGTCCGGATGCCACAGCAGCACAGAAAAAGAAGACTGAGCAACT
GCAAGAAGTTTTCAAGAAGAGAGAACTATTCGGATGGATCTTTCCGAGGC
TGCCGAATTCGACGGGGGCTTCATGTTCTAGAAGATAAGAGAACCATTCC
TAGATATAGATGTTCGAGATTTAAATCGCTTGGGGTTGCCCGAAAGACAT
ATTCCGGAATGCCTACGGCGTTGTCGCTTGGACGCCGCCGTCGACACGGG
GGGTCGCTTCGACAGAAACGTGGAGTCGTCGAGGAGATATCTTCGAGACT
AGAATCACAGAAGAAGAAGAACAACAGAAATCGCTTGGGATTGCTGGAAA
GATACATTCCGGGATGCCTACAGCGTTGTCGCTTGGACGCCGCCGTCGAC
TCGGGGGTCGCTTCGACAGAAAGTGGAATCGTCGGGGAGATATCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:733620..734464+

>mRNA_P-littoralis_Contig13.143.1 ID=mRNA_P-littoralis_Contig13.143.1|Name=mRNA_P-littoralis_Contig13.143.1|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig13:733620..734464+ (Pylaiella littoralis U1_48)
ATGCCACAGCAGCACAGAAAAAGAAGACTGAGCAACTGCAAGAAGTTTTC
AAGAAGAGAGAACTATTCGGATGGATCTTTCCGAGGCTGCCGAATTCGAC
GGGGGCTTCATGTTCTAGAAGATAAGAGAACCATTCCTAGATATAGATGT
TCGAGATTTAAATCGCTTGGGGTTGCCCGAAAGACATATTCCGGAATGCC
TACGGCGTTGTCGCTTGGACGCCGCCGTCGACACGGGGGGTCGCTTCGAC
AGAAACGTGGAGTCGTCGAGGAGATATCTTCGAGACTAGAATCACAGAAG
AAGAAGAACAACAGAAATCGCTTGGGATTGCTGGAAAGATACATTCCGGG
ATGCCTACAGCGTTGTCGCTTGGACGCCGCCGTCGACTCGGGGGTCGCTT
CGACAGAAAGTGGAATCGTCGGGGAGATATCT
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