mRNA_P-littoralis_Contig13.117.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.117.3
Unique NamemRNA_P-littoralis_Contig13.117.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.117.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:552894..553874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size471
Hectar predicted targeting categoryother localisation
Exons2
Cds size468
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789580.0085983-CDS-P-littoralis_Contig13:552894..5530611680789580.0085983-CDS-P-littoralis_Contig13:552894..553061Pylaiella littoralis U1_48CDSP-littoralis_Contig13 552895..553061 -
1680789580.0233762-CDS-P-littoralis_Contig13:553573..5538741680789580.0233762-CDS-P-littoralis_Contig13:553573..553874Pylaiella littoralis U1_48CDSP-littoralis_Contig13 553574..553874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.117.3prot_P-littoralis_Contig13.117.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 552895..553874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.117.3

>prot_P-littoralis_Contig13.117.3 ID=prot_P-littoralis_Contig13.117.3|Name=mRNA_P-littoralis_Contig13.117.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=156bp
ELLLSRSCVSKHTTYTLSQPSVCHPAYPTILSVTSHSVKHVPGTHRRTYT
YMEHLAHDDADVASDESGVRRGVPPSDDGPSRPQAADFVPAQSWGFFKLN
VFSFYFRRKSCFGDLLPGGDHPSASRCLEVASRKPAVRRYYSCAGRGRCL
LTSSIS
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mRNA from alignment at P-littoralis_Contig13:552894..553874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.117.3 ID=mRNA_P-littoralis_Contig13.117.3|Name=mRNA_P-littoralis_Contig13.117.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=981bp|location=Sequence derived from alignment at P-littoralis_Contig13:552894..553874- (Pylaiella littoralis U1_48)
GAGCTCCTCTTGTCGCGTTCTTGTGTCTCAAAACACACGACATACACCCT
CTCACAACCCTCAGTTTGCCATCCCGCCTATCCCACAATACTTTCGGTGA
CCTCGCATTCAGTGAAGCATGTTCCAGGTACACACCGACGCACATATACA
TACATGGAGCATCTAGCACACGACGATGCCGACGTTGCCTCCGACGAAAG
CGGGGTGCGACGCGGAGTACCGCCAAGCGATGACGGGCCTTCTCGGCCCC
AAGCTGCCGACTTCGTCCCCGCTCAGAGCTGGGGATTCTTCAAGCTCAAT
GGTGGGAGTGTACCATTGCTGCTATCAGTAGATACGCCCTCGAGGCACAC
GGGGGCTCATAACAGGATAGCAGCCTTCGTTGTAGAACGAGGCAACGGTT
TATAAATGGCCGCGTTGTACAGAGCTCGTGGCCAACATTGTTCGCACTTT
GCTCTCTACTCCCTGGCTTGCTTTTCTACGCTGTGACTGTCAGTATACAC
AGCTTTGTAGCGTTCCGCTTTTGGCGTTTGCGGCTCGTGCGTGAGGCGGC
TGGTGGATACCCCCATCGCAGAGGACAGCACCCCCACAACTCTTAGCCCG
TGCCTGTCACCAACAATCTTCTGACCTACAGCAGCCTCGTCTCTTTTGTC
TTCCGCACTCGGTTGTCGTCCACGCAGTCTGGCCTTCTTTGGCTGTATTG
TTTGTTGTATGTTTGTAGACAAATCCTCATCTTATTGCCAAAACTGCTGC
TGCTGTTGCTACGATAACGCAGTTTGTCCGCCCCCATTGACGTTCGGTGA
CTTCTCCGCGCAGTGTTTTCCTTCTACTTTCGACGAAAGTCGTGCTTCGG
GGATCTGCTCCCGGGAGGCGATCATCCGTCGGCATCTCGCTGTCTAGAAG
TAGCTTCAAGGAAACCAGCGGTGAGAAGATACTACTCTTGCGCAGGTCGT
GGGCGTTGTCTTTTAACGTCTAGCATTTCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:552894..553874-

>mRNA_P-littoralis_Contig13.117.3 ID=mRNA_P-littoralis_Contig13.117.3|Name=mRNA_P-littoralis_Contig13.117.3|organism=Pylaiella littoralis U1_48|type=CDS|length=468bp|location=Sequence derived from alignment at P-littoralis_Contig13:552894..553874- (Pylaiella littoralis U1_48)
GAGCTCCTCTTGTCGCGTTCTTGTGTCTCAAAACACACGACATACACCCT
CTCACAACCCTCAGTTTGCCATCCCGCCTATCCCACAATACTTTCGGTGA
CCTCGCATTCAGTGAAGCATGTTCCAGGTACACACCGACGCACATATACA
TACATGGAGCATCTAGCACACGACGATGCCGACGTTGCCTCCGACGAAAG
CGGGGTGCGACGCGGAGTACCGCCAAGCGATGACGGGCCTTCTCGGCCCC
AAGCTGCCGACTTCGTCCCCGCTCAGAGCTGGGGATTCTTCAAGCTCAAT
GTGTTTTCCTTCTACTTTCGACGAAAGTCGTGCTTCGGGGATCTGCTCCC
GGGAGGCGATCATCCGTCGGCATCTCGCTGTCTAGAAGTAGCTTCAAGGA
AACCAGCGGTGAGAAGATACTACTCTTGCGCAGGTCGTGGGCGTTGTCTT
TTAACGTCTAGCATTTCC
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