mRNA_P-littoralis_Contig13.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig13.1.1
Unique NamemRNA_P-littoralis_Contig13.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig13.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig13contigP-littoralis_Contig13:19557..22852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size493
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.8974264-UTR-P-littoralis_Contig13:19556..195991680789579.8974264-UTR-P-littoralis_Contig13:19556..19599Pylaiella littoralis U1_48UTRP-littoralis_Contig13 19557..19599 +
1680789579.9391026-UTR-P-littoralis_Contig13:22705..228521680789579.9391026-UTR-P-littoralis_Contig13:22705..22852Pylaiella littoralis U1_48UTRP-littoralis_Contig13 22706..22852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.919299-CDS-P-littoralis_Contig13:19599..198111680789579.919299-CDS-P-littoralis_Contig13:19599..19811Pylaiella littoralis U1_48CDSP-littoralis_Contig13 19600..19811 +
1680789579.929811-CDS-P-littoralis_Contig13:22614..227051680789579.929811-CDS-P-littoralis_Contig13:22614..22705Pylaiella littoralis U1_48CDSP-littoralis_Contig13 22615..22705 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig13.1.1prot_P-littoralis_Contig13.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig13 19600..22705 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig13.1.1

>prot_P-littoralis_Contig13.1.1 ID=prot_P-littoralis_Contig13.1.1|Name=mRNA_P-littoralis_Contig13.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=101bp
MAAAVTEADSSLGTVAYKAAAGPRSMLLWGLEALRGMLHEKGAKVFLPGP
PAPAVAAPGSSAPAAATYLASCDSSSTAFSASCATRTVAIRDSPCALTWT
*
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mRNA from alignment at P-littoralis_Contig13:19557..22852+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig13.1.1 ID=mRNA_P-littoralis_Contig13.1.1|Name=mRNA_P-littoralis_Contig13.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3296bp|location=Sequence derived from alignment at P-littoralis_Contig13:19557..22852+ (Pylaiella littoralis U1_48)
GGAGAGCCGCGGCAACGCATCCGGCGTGTCCCTGTTTGCAGCGATGGCAG
CTGCAGTGACCGAGGCGGACTCCTCCCTCGGCACGGTGGCCTACAAGGCG
GCGGCGGGGCCGCGCTCGATGCTCCTGTGGGGACTCGAAGCTTTGCGCGG
CATGCTCCACGAGAAAGGAGCGAAGGTGTTTCTGCCGGGTCCCCCGGCGC
CAGCCGTCGCCGCGCCTGGCTCTTCCGCGCCAGCAGCGGCGACATATCTC
GCGAGGTGAATTTTGGGTGCTTGCATTTTATCTCCATCCACCGCTGTGCA
TTTGTTCGGGCTTCGGCCTTAAATCTATGGGGGTATACTAGGTTCCATAT
ATTCTCTGTCACCTTTCTGCTTTCCATCGTTCTCGGATGCCAGCAATATT
TTGGTTCGGAGTAATGCGGTACTGGAAAAGAGGGATCGGTTTCTGTACTC
TTTATCATAAATGCTGTTTCACCGACTGCCTGTACAGTACAGCAGTACCG
GCTACACCGCCGTGCTTATATTGATATGGTACGTTACTGCCATGAGCAGT
TGCGTCGTACACTCCGGAACTGCTGTTACTGACATCAGGGGTGGATTCGT
ACACTCAAACTGAGTAGTGAGTATGCTACTGCGATACTGCTGTAGACCGA
GCCGCCATACGATTGTACAAACGTCCCTGCCTGCTGTAACCACGCTGCGG
TACCGGGAGTGCGTATCGGACGACCCGCTATTGACGAATACCTGGTAGTG
ATAATGCGTGCTATTTACGACCGACCGGGTTCGATCCCCTTAAATACCTG
CGTCTACGGCGGGGTTCGATTTCATCACTTACGGAAGGATGCTTTATTCT
ATTTCATTTTATTTTCGGTTCTATCATACCTGAAATGCTGTCATGTACGA
TACCGACATTAGGAATACTCCGGAACCGGGTAATGAGTAGGCTGCTGCTG
TACCCAGACACCCTGACGACTGCTGTTGACACTTTATTTTATTTTATTTC
ACCTCACTGTGTACGATACTGCTGATGATACTCGATCCTTATTTTCCGTT
CTACCTCATTCTGTACGATACTGACATCAGTGGCTGGTTGCTTCGTATGC
TCCGGAACCGGAAATGAGTAGGTAGGCTACTGCTGTACACACACACCATA
ACCATGCTGCGGTAGACCGGGCCGCAATACTGTACAACCGCCCAGGCCCG
CGGTAACCAGGCCGCGGTACCGGGAACCACCGTAGGGCGTATACGAGTAT
TAGGTTCCGTTATGGACGCATAGTTATTATACATTTACGTCTGGGTTCGA
TCCCCTACACCTTTAAAACTACGGCGGGGGGGGGGCTCGATGCCCCGCTT
ACGGAGGGCACTTTATGTTTAAATTTTATTTTTCTATGTTTCTATTTTGA
CGAATATGTTCGAACGGGTTCGATCCCTTAATTTACGGACGGGTTCGATC
CCCACTACACGATTTGGGTTCGACCCCCTCGGGCACGAACGAGCTCGACC
CCCTACGAACAGGTTCGATCTCCACTACGCAATTGGGTTCGATCCCCTCG
GATACGAAGGGGTTCGACCCCCCCTAATTTTCAGACAGGTTCGATCCCCA
CTACGCAATTGGGTTCGATCCCCTCGTATCCGAACGGGTTCGACCCCCTG
GTTTGGTTTGGTCCTAATTTTTGGACAGGCTCGATCCCCACTACGCAATT
GGGTTCGATCCCCTCGTATCCAACAGGTTCGACCCCCTGGTTTTCGGACG
GGTTCGATCCCCACTACGCAATCGGGTTCGATCCCCTCATATACTTTTAC
GGCAAACGGGTTCGATCCCCACTACGCAAACGGGTTCATATACTTTTACG
GACGGGTTCGACCCCCACTGGTTTTCGGACGGGTTCGATTACGGGGACGG
GTTCGATCCCCACTACGCAAACCGGACGGGTTCGATCCCCACACTCGGGT
TCGATCCCCTCATATACTTTTCGGACGGGTTCGATCCCCACTACGCAATC
GGGTTCGATCCCCTCATATACGGACGGGTTTTACGGACGGGTTCGATCCA
AACTACGCATATTACGGACGGGTTCGACCCCACTGGTTTTCGGACGGGTT
CGATCCCCACTGGTTTTCGGACGGGTTCGATCCCCACTACGCAATCGGGT
TCGATCCCCTCATATACTTTTACGGACGGGTTCGATCCAAACTACGCAAT
TGGGTTCGACCCCTCATATACTTTTACGGACGGGTTCGATCCCCACTGGT
TTTCGGACGGGTTCGATCCCCACTACGCAATCGGGTTCGATCCCCTCATA
TACTTTTACGGACGGGTTCGATCCATACTACGCAATCGGGTTCGATCCCC
TCATATACTTTTACGGACGGGTTCGATCCCCACTGGTTTTCGGACGGGTT
CGATCCCCACTGCGCAATGGGGTTCGATCCCCTCATATACTTTTACGGAC
GGGTTCGATCCCCACTAAACGCGTGGGTTCGATCCCCTACTACTGTACAA
ACGGGTTCGATCCCCTTGCGGTACGATCGGGTTCGATCCCCTCATACTTC
GTATACCTTTACGGACGGATTCGATCCTCACTTATCGCGTGGGTTCGATC
CCCAACTGCTGTACGAACGGGTCGATCCCCTTGCGGTACGATTGGGTTCG
ACCCCCTGTGTGGCACGGTTCGACCCCGTGGGGCTTTTGCCGGCAAATCA
AGAATGTTATCTTTGCTTTGTCTTTCCGATCCCCGTGGGGCTCTGCAGGA
AAAATCAGGAATCTTGTTTATTTGATTCTATTTCACTTTCTTTCGCGGCT
GTTGTACGGTCCGATCCCCTTGCGAGTTTCTGCGTGAAGTTTCCTGAGCG
CGCCATGCGACGTGGGGCTCTGCAGGAAAAAGCAGGAATCTTGTTTTATT
TATTCTATTTCACTTTCTTTCGCGGCTGTGGTACGGTTCGATCCCCTTGC
GAGTTTCTGCGTGAAGTCCCCTGAGCGCGCCATGCGACGAACGAGTTTCA
TATTAACGTGGCCGACCGATTTATTTGCTTTCATTTCCGACGGTGCGATC
GATTGCAGTTGCGACTCAAGCTCGACGGCGTTCTCGGCGTCATGCGCGAC
GCGGACGGTTGCTATACGTGATTCACCATGCGCACTCACCTGGACGTAGC
CATTCGGATGGCAACGGATTTGAACCTCCTCGACGCGAGGAAGGTCGCGC
GGGGCAATCGTATGGTGGCGGCGTGTAACGATCCGGTTCTCGTCCTTGGC
GTCTTCTCCAAGATGCTGCCGTCGGTCCACGGCGTCTCGCAAGAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig13:19557..22852+

>mRNA_P-littoralis_Contig13.1.1 ID=mRNA_P-littoralis_Contig13.1.1|Name=mRNA_P-littoralis_Contig13.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=303bp|location=Sequence derived from alignment at P-littoralis_Contig13:19557..22852+ (Pylaiella littoralis U1_48)
ATGGCAGCTGCAGTGACCGAGGCGGACTCCTCCCTCGGCACGGTGGCCTA
CAAGGCGGCGGCGGGGCCGCGCTCGATGCTCCTGTGGGGACTCGAAGCTT
TGCGCGGCATGCTCCACGAGAAAGGAGCGAAGGTGTTTCTGCCGGGTCCC
CCGGCGCCAGCCGTCGCCGCGCCTGGCTCTTCCGCGCCAGCAGCGGCGAC
ATATCTCGCGAGTTGCGACTCAAGCTCGACGGCGTTCTCGGCGTCATGCG
CGACGCGGACGGTTGCTATACGTGATTCACCATGCGCACTCACCTGGACG
TAG
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