mRNA_P-littoralis_Contig1298.13.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1298.13.1
Unique NamemRNA_P-littoralis_Contig1298.13.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1298.13.1 vs. uniprot
Match: D7FMG8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMG8_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.040e-29
Identity = 55/94 (58.51%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:   10 TGLTQQETLVFYEAQGGDDGHLFAESRNVDGRISAAENLNRRRIRGSMPFRDRFLCWLIMLRQGYHFREMEVLFGPSASTFNRDLLWMTIQAQT 291
            TG  + E   FY AQGGD+GHLF   R++DG+ + AEN  RR I+G++ +RDR LCWL+MLR+G  F EM  LFGP  STF RD LWMTIQA T
Sbjct:  145 TGFRRNEFDDFYTAQGGDEGHLFRVPRDIDGQFTPAENSARRTIKGTLRYRDRVLCWLMMLRRGCCFHEMTTLFGPGESTFCRDFLWMTIQAAT 238
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BLAST of mRNA_P-littoralis_Contig1298.13.1 vs. uniprot
Match: A0A6H5K1A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1A5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.350e-20
Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:   49 AQGGDDGHLFAESRNVDGRISAAENLNRRRIRGSMPFRDRFLCWLIMLRQGYHFREMEVLFGPSASTFNRDLLWMTIQAQTCEFLNNV 312
            A+ G    L   S     R    EN+ RRRIRG+M +RDR LCWL+MLRQ + F  ME L+GPSA+TF RD +WMT QA T E LN+V
Sbjct:  144 ARSGSTQALTRRSSTNSMRSWEDENMARRRIRGTMGYRDRALCWLMMLRQDFCFHTMEDLWGPSAATFQRDFVWMTTQATTLELLNDV 231
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BLAST of mRNA_P-littoralis_Contig1298.13.1 vs. uniprot
Match: A0A6H5JHP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP2_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 1.210e-6
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   10 TGLTQQETLVFYEAQGGD-DGH------LFAESRNVDGRISAAENLNRRRIRGSMPFRDRFLCWLIMLRQ 198
            TG+ + E   FYE    D +G+      LF ++RN  G  SA +N  RR IRGSM  RDRFLCWL MLR+
Sbjct:   96 TGMEKDEFDAFYEDTFLDPEGNRLARSWLFGQARNHLGNYSAEDNKARRVIRGSMDGRDRFLCWLEMLRR 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1298.13.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMG8_ECTSI2.040e-2958.51Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5K1A5_9PHAE5.350e-2053.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP2_9PHAE1.210e-648.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1298contigP-littoralis_Contig1298:39529..39849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size321
Hectar predicted targeting categoryother localisation
Exons1
Cds size321
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.837388-CDS-P-littoralis_Contig1298:39528..398491680789579.837388-CDS-P-littoralis_Contig1298:39528..39849Pylaiella littoralis U1_48CDSP-littoralis_Contig1298 39529..39849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1298.13.1prot_P-littoralis_Contig1298.13.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1298 39529..39849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1298.13.1

>prot_P-littoralis_Contig1298.13.1 ID=prot_P-littoralis_Contig1298.13.1|Name=mRNA_P-littoralis_Contig1298.13.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=107bp
RQWTGLTQQETLVFYEAQGGDDGHLFAESRNVDGRISAAENLNRRRIRGS
MPFRDRFLCWLIMLRQGYHFREMEVLFGPSASTFNRDLLWMTIQAQTCEF
LNNVSV*
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mRNA from alignment at P-littoralis_Contig1298:39529..39849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1298.13.1 ID=mRNA_P-littoralis_Contig1298.13.1|Name=mRNA_P-littoralis_Contig1298.13.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig1298:39529..39849+ (Pylaiella littoralis U1_48)
CGCCAATGGACAGGGCTGACGCAGCAAGAGACCTTGGTGTTCTACGAAGC
CCAGGGCGGGGACGATGGACATTTATTCGCTGAATCGCGCAACGTCGATG
GCAGGATCTCCGCAGCCGAAAATTTGAACAGGAGGAGAATCCGAGGTAGC
ATGCCCTTCCGAGACCGCTTTCTGTGTTGGCTGATCATGCTCCGTCAGGG
ATATCACTTCCGCGAGATGGAGGTACTTTTCGGCCCCTCCGCCTCCACCT
TCAACCGTGATCTCCTGTGGATGACGATCCAAGCACAGACGTGTGAGTTC
CTCAACAACGTGAGTGTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1298:39529..39849+

>mRNA_P-littoralis_Contig1298.13.1 ID=mRNA_P-littoralis_Contig1298.13.1|Name=mRNA_P-littoralis_Contig1298.13.1|organism=Pylaiella littoralis U1_48|type=CDS|length=321bp|location=Sequence derived from alignment at P-littoralis_Contig1298:39529..39849+ (Pylaiella littoralis U1_48)
CGCCAATGGACAGGGCTGACGCAGCAAGAGACCTTGGTGTTCTACGAAGC
CCAGGGCGGGGACGATGGACATTTATTCGCTGAATCGCGCAACGTCGATG
GCAGGATCTCCGCAGCCGAAAATTTGAACAGGAGGAGAATCCGAGGTAGC
ATGCCCTTCCGAGACCGCTTTCTGTGTTGGCTGATCATGCTCCGTCAGGG
ATATCACTTCCGCGAGATGGAGGTACTTTTCGGCCCCTCCGCCTCCACCT
TCAACCGTGATCTCCTGTGGATGACGATCCAAGCACAGACGTGTGAGTTC
CTCAACAACGTGAGTGTTTGA
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