mRNA_P-littoralis_Contig1298.3.5 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1298.3.5
Unique NamemRNA_P-littoralis_Contig1298.3.5
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1298.3.5 vs. uniprot
Match: A0A6H5K5N3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N3_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.730e-8
Identity = 25/39 (64.10%), Postives = 31/39 (79.49%), Query Frame = 2 
Query:    2 KTAEFCSGHAKDGMIDVISKRCNHRGCTKQPSFGVAGTK 118
            K AEFCS H +  M++V+SKRC H GCTKQPS+G AG+K
Sbjct:   20 KNAEFCSQHKQQDMVNVVSKRCGHPGCTKQPSYGRAGSK 58
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BLAST of mRNA_P-littoralis_Contig1298.3.5 vs. uniprot
Match: D7FSL8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL8_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.110e-7
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 2 
Query:   11 EFCSGHAKDGMIDVISKRCNHRGCTKQPSFGVAGTK 118
            EFCS HAK GMI+V  KRC H GCTK+PSFG AG+K
Sbjct:    4 EFCSQHAKPGMINVRKKRCCHPGCTKKPSFGTAGSK 39
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1298.3.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5N3_9PHAE6.730e-864.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSL8_ECTSI2.110e-772.22EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1298contigP-littoralis_Contig1298:28195..31566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LD34
Model size2749
Max annot lvl2880.D8LD34|-
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.96e-06
EggNOG OGs29ZCP@1|root,2RXW0@2759|Eukaryota
Cds size1662
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.5790083-UTR-P-littoralis_Contig1298:28194..292411680789579.5790083-UTR-P-littoralis_Contig1298:28194..29241Pylaiella littoralis U1_48UTRP-littoralis_Contig1298 28195..29241 -
1680789579.6150477-UTR-P-littoralis_Contig1298:31526..315661680789579.6150477-UTR-P-littoralis_Contig1298:31526..31566Pylaiella littoralis U1_48UTRP-littoralis_Contig1298 31527..31566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.5895412-CDS-P-littoralis_Contig1298:29241..292941680789579.5895412-CDS-P-littoralis_Contig1298:29241..29294Pylaiella littoralis U1_48CDSP-littoralis_Contig1298 29242..29294 -
1680789579.6061592-CDS-P-littoralis_Contig1298:29917..315261680789579.6061592-CDS-P-littoralis_Contig1298:29917..31526Pylaiella littoralis U1_48CDSP-littoralis_Contig1298 29918..31526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1298.3.5prot_P-littoralis_Contig1298.3.5Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1298 29242..31526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1298.3.5

>prot_P-littoralis_Contig1298.3.5 ID=prot_P-littoralis_Contig1298.3.5|Name=mRNA_P-littoralis_Contig1298.3.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=554bp
MIDVISKRCNHRGCTKQPSFGVAGTKTAEFCSGHAKDGMVDVRHKRCNHR
GCTKHPSFGVAGTKTPEFGLGHAKDGMVDVINKRCNHRGCTKWPSFGVAG
TKTAEFCSGHAKDGMVNVRNKSCTHHGCTKQPSFGVAGTKTAEFCSGHAK
DGMVDVRHKRCNHRGCTKHPSFGVAGTKTPEFGLGHAKDGMMDVINKRCN
HRGCTKWPSFGVAGTKTAEFCSGHAKDGMVDVIHKRCNHRGCTKHLIYGV
AGTKTVEFCSGHATDTMMDVINKRCNHHGCTKRASYGVAGTKTVEFCLGH
AKDGMVSVKAKKRCNHRGCTMLAKSSAVGKEQAEFCNEHVKGGNVDVVNE
RCAQPGFTTSPGFVVTGGIRTFCTRFPGQGTTDLTASKNRAGVHSGNSGG
ARGHGGVAVEGDTAQRAGASGKRRDRSPSSTQMGKSLCRSKRSRQMPVHT
YETKTPLETAVNGGHTPVGLGSLSEPENAGVKAEVEVSSKSDPARSSPFE
AVAWVTSAENGSCGEPDGAVKREVGISLPLKGSAAVGKLKPRRSKRVTGE
TRR*
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mRNA from alignment at P-littoralis_Contig1298:28195..31566-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1298.3.5 ID=mRNA_P-littoralis_Contig1298.3.5|Name=mRNA_P-littoralis_Contig1298.3.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=3372bp|location=Sequence derived from alignment at P-littoralis_Contig1298:28195..31566- (Pylaiella littoralis U1_48)
CAAGACGGCGGAGTTCTGCTCTGGACATGCCAAGGACGGGATGATAGACG
TCATCAGCAAAAGGTGCAACCACCGTGGCTGCACCAAGCAGCCGAGCTTT
GGTGTGGCGGGTACCAAGACGGCGGAGTTCTGCTCGGGACACGCCAAGGA
TGGGATGGTTGACGTCAGACACAAGAGGTGCAACCACCGTGGCTGCACCA
AGCACCCGAGCTTTGGTGTGGCGGGTACCAAGACGCCGGAATTCGGCCTT
GGACACGCCAAGGACGGGATGGTGGACGTCATCAACAAAAGGTGCAACCA
CCGTGGCTGCACCAAGTGGCCGAGCTTTGGTGTGGCGGGTACCAAGACGG
CGGAGTTCTGCTCTGGACATGCCAAGGATGGGATGGTGAACGTCAGGAAC
AAGAGCTGCACCCACCATGGCTGCACCAAGCAGCCGAGCTTTGGGGTGGC
GGGTACCAAGACGGCGGAGTTCTGCTCGGGACACGCCAAGGATGGGATGG
TTGACGTCAGACACAAGAGGTGCAACCACCGTGGCTGCACCAAGCATCCG
AGCTTTGGTGTGGCGGGTACCAAGACGCCGGAATTCGGCCTTGGACACGC
CAAGGACGGGATGATGGACGTCATCAATAAAAGGTGCAACCACCGTGGCT
GCACCAAGTGGCCGAGCTTTGGCGTGGCGGGTACCAAGACGGCGGAGTTC
TGCTCTGGACATGCCAAGGATGGGATGGTGGACGTCATCCACAAGAGGTG
CAACCACCGTGGGTGCACCAAGCATCTGATCTATGGTGTGGCGGGTACCA
AGACGGTGGAATTCTGCTCGGGACACGCCACGGACACGATGATGGACGTC
ATCAACAAGAGGTGCAACCACCATGGCTGCACCAAGCGGGCGAGCTATGG
TGTGGCGGGCACCAAGACGGTTGAGTTCTGCTTGGGACACGCCAAGGACG
GGATGGTGAGCGTCAAAGCCAAGAAGAGGTGCAACCACCGTGGGTGCACC
ATGCTAGCGAAATCTAGTGCTGTAGGTAAGGAACAGGCGGAGTTTTGCAA
CGAGCATGTCAAGGGCGGAAATGTGGACGTCGTCAATGAGAGGTGTGCCC
AACCAGGTTTCACCACCTCTCCTGGCTTCGTTGTGACCGGCGGCATCCGA
ACCTTCTGCACGCGATTTCCTGGACAAGGCACTACGGATCTCACCGCATC
CAAGAACCGAGCTGGTGTCCACAGCGGTAACAGTGGTGGCGCACGAGGGC
ATGGCGGTGTAGCAGTGGAAGGGGACACTGCCCAACGTGCTGGTGCCAGT
GGAAAGAGGAGGGACCGCTCTCCTTCATCCACCCAGATGGGGAAATCTCT
GTGCCGGAGCAAGCGAAGCCGCCAGATGCCCGTCCACACGTATGAGACTA
AGACTCCACTCGAAACAGCAGTGAACGGAGGCCACACTCCAGTCGGATTA
GGTTCGTTGTCAGAGCCAGAGAATGCTGGGGTGAAGGCGGAGGTGGAGGT
CTCGTCGAAGTCAGACCCCGCGCGATCTTCCCCATTTGAAGCAGTAGCAT
GGGTCACCTCTGCGGAGAATGGTTCGTGTGGTGAGCCAGACGGTGCGGTG
AAGAGGGAAGTAGGGATCTCACTTCCATTGAAAGGATCGGCAGCTGTGGG
TGAGTCGAAAACAGTTGATTTTGATGCAGTAGCCGAGTCTCGCGTGTCGG
ATTGTCTCATCGCAGAGTTCTCGACTCGCCACTTGTTTCTTTGTCTTTGC
CATGTTGGGGGGAGTGGAAAACGGGCAGGTCGTGTTTTCTTTTTGGTAGA
TTTGCGTGATGCACCAGCAGGTGTCGTACCTGTTCGAGCAACAGATGCCT
TTTGCATCGTACCCCTGCAGTGAGGGGAGCTGGTGAAACATCGACGTGCA
CATTTTACCTTCAAGGAGTCCCCGTGGGTGATGAGTCGAAACTTGTATCA
TATGCCTCGGCGGTTTTATGCGGCGTAATGCTCATTGTTTCGCTGATCTC
TCGCAACGTCGGTTTGATTGGCAATACTGCTTGGTGCTTTGCTTTCCTCA
TGAGAATCAATTTTGTAACCTGTGTGTTTGCTGCTCAAGTAAACTCTACG
GCGGTGTGCGTGGATACAACACGCGTCCTGGTACAACAAGCCGCGTACGT
ATTGGCGATAAACTTGAGAGCAGTGCATCAGCGGTATTTTACGGCCGTGG
CCGACCCTGCCCCCGCCGTCCTCATTTCAAGCTCCCAAGTTCCTTGTTGA
TCTTCCAATTACTTTGAAACAGGTAAGCTAAAGCCAAGGAGGAGCAAGAG
GGTAACGGGGGAGACCCGGAGGTAGCATGATTGCACCCTCGGGACTGACG
ACCACACTGCTGCTGCGGTTGATCTTTGGCGGTCCGCTCTTCTGACTGGT
ATTCGTGTCAACAGCATGCCATGTCACGGTGGTGTTGTTTACTGTGGTGT
TGCTTACTGTGTACCGATTCGGAGGATGTCAACCTGCGACATCCAGGGGT
TGACCAGGCATGTTGAACACAGAGCACACGAATACAGAGATCGAGTAGGG
GGGCACACTTTGTGGCGAGATAAAATTCAACAGCATCACCACTTCCACTG
CTGTGAGCATGTATGTACGGCAACAGGGCAAGTACCAGTACTCTTTTTCC
GCTGTAGACGAAAATGTTGGGGCAAAGGCAGGCAGACGAGGTAGCAAAGC
AAGGCCTTTTCATGCACCGGTGAAAGGGTGGCGTTGTACTTGTACTGTGC
TCTGTTTCTGATATTTTTGGCTACTTCGATTCTGTCGTTGTTCTTTTCGT
TTCCAGTGTCTCGGCTATCTTTGAGTTGGTTTGAATTTCTGGCATGACCT
TGGTGGCATCGGGAATGATCGTGTGGTATTGGGTTTTCATCGTTGGTTCA
AAAGTTTGGTCGCAATCCAGGTCGTGGCGAGGGTTGGGCCGCACCAGGCG
AAACCGACGATGAACACACCCAACAGCGGCTCGTGCATCTAGGGGCAACA
TGAAGAAAGTAAATGAAAACGGTGCAGATGAGTAGAGACATCAGCGCCAA
AAGAAGGTCGGTGTTGGGAATATCTTGTAGAGGGCTGCCCAGAATGTTAC
TGTTGTTTTGATTTTGGTCCCCTTTCGCTTACGGTCTACTTGGAAGTACT
TTTTTGGAAGCTGTCTTCAAGTCGATGACTGCGTATCATTGGTATTGCTG
TGAGTGTGGTACATACTCGAAGTACATATTTCTTGCCTGTGGCAATTCGT
GTTCCCGGGCCACATCGCAACGAACGGCGGTGCCAAAAAAAAACACGCAA
CGAAAAGAGCTCAAAATCATTCGAGAATCGACCGTTCGGGGTGGTTGACG
CGTTGACGCGCATGGCAACGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1298:28195..31566-

>mRNA_P-littoralis_Contig1298.3.5 ID=mRNA_P-littoralis_Contig1298.3.5|Name=mRNA_P-littoralis_Contig1298.3.5|organism=Pylaiella littoralis U1_48|type=CDS|length=1662bp|location=Sequence derived from alignment at P-littoralis_Contig1298:28195..31566- (Pylaiella littoralis U1_48)
ATGATAGACGTCATCAGCAAAAGGTGCAACCACCGTGGCTGCACCAAGCA
GCCGAGCTTTGGTGTGGCGGGTACCAAGACGGCGGAGTTCTGCTCGGGAC
ACGCCAAGGATGGGATGGTTGACGTCAGACACAAGAGGTGCAACCACCGT
GGCTGCACCAAGCACCCGAGCTTTGGTGTGGCGGGTACCAAGACGCCGGA
ATTCGGCCTTGGACACGCCAAGGACGGGATGGTGGACGTCATCAACAAAA
GGTGCAACCACCGTGGCTGCACCAAGTGGCCGAGCTTTGGTGTGGCGGGT
ACCAAGACGGCGGAGTTCTGCTCTGGACATGCCAAGGATGGGATGGTGAA
CGTCAGGAACAAGAGCTGCACCCACCATGGCTGCACCAAGCAGCCGAGCT
TTGGGGTGGCGGGTACCAAGACGGCGGAGTTCTGCTCGGGACACGCCAAG
GATGGGATGGTTGACGTCAGACACAAGAGGTGCAACCACCGTGGCTGCAC
CAAGCATCCGAGCTTTGGTGTGGCGGGTACCAAGACGCCGGAATTCGGCC
TTGGACACGCCAAGGACGGGATGATGGACGTCATCAATAAAAGGTGCAAC
CACCGTGGCTGCACCAAGTGGCCGAGCTTTGGCGTGGCGGGTACCAAGAC
GGCGGAGTTCTGCTCTGGACATGCCAAGGATGGGATGGTGGACGTCATCC
ACAAGAGGTGCAACCACCGTGGGTGCACCAAGCATCTGATCTATGGTGTG
GCGGGTACCAAGACGGTGGAATTCTGCTCGGGACACGCCACGGACACGAT
GATGGACGTCATCAACAAGAGGTGCAACCACCATGGCTGCACCAAGCGGG
CGAGCTATGGTGTGGCGGGCACCAAGACGGTTGAGTTCTGCTTGGGACAC
GCCAAGGACGGGATGGTGAGCGTCAAAGCCAAGAAGAGGTGCAACCACCG
TGGGTGCACCATGCTAGCGAAATCTAGTGCTGTAGGTAAGGAACAGGCGG
AGTTTTGCAACGAGCATGTCAAGGGCGGAAATGTGGACGTCGTCAATGAG
AGGTGTGCCCAACCAGGTTTCACCACCTCTCCTGGCTTCGTTGTGACCGG
CGGCATCCGAACCTTCTGCACGCGATTTCCTGGACAAGGCACTACGGATC
TCACCGCATCCAAGAACCGAGCTGGTGTCCACAGCGGTAACAGTGGTGGC
GCACGAGGGCATGGCGGTGTAGCAGTGGAAGGGGACACTGCCCAACGTGC
TGGTGCCAGTGGAAAGAGGAGGGACCGCTCTCCTTCATCCACCCAGATGG
GGAAATCTCTGTGCCGGAGCAAGCGAAGCCGCCAGATGCCCGTCCACACG
TATGAGACTAAGACTCCACTCGAAACAGCAGTGAACGGAGGCCACACTCC
AGTCGGATTAGGTTCGTTGTCAGAGCCAGAGAATGCTGGGGTGAAGGCGG
AGGTGGAGGTCTCGTCGAAGTCAGACCCCGCGCGATCTTCCCCATTTGAA
GCAGTAGCATGGGTCACCTCTGCGGAGAATGGTTCGTGTGGTGAGCCAGA
CGGTGCGGTGAAGAGGGAAGTAGGGATCTCACTTCCATTGAAAGGATCGG
CAGCTGTGGGTAAGCTAAAGCCAAGGAGGAGCAAGAGGGTAACGGGGGAG
ACCCGGAGGTAG
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