mRNA_P-littoralis_Contig100.53.155 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig100.53.155 vs. uniprot
Match: D7FJX5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX5_ECTSI) HSP 1 Score: 320 bits (820), Expect = 4.090e-93 Identity = 260/503 (51.69%), Postives = 296/503 (58.85%), Query Frame = 2
Query: 4295 KAALALSXXXXXXXXXXXXAQVSAWETKSLREELEGLRERSAELSSALETARARESAAAAEAREGVRGELESLREAVGVAEAGREEAEAGLARLKDKKKRDLQEVRRLNERMMQLQQERREEVSRLETAVEQLQRKAHGLEEAGADREEALAQALSERDDLRGQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDQAXXXXXXXXXXXXXXXXXXEYDGRANDPEEKEGTEGFQSDGGDGTGGDARREEREKEVSLLRNLVEKLQREVEGLKSDLEEASAGRAEAEDAKETSAAALIRANARIAELTAKSAQLTRARSAMVAQIHALEEQ----SSKQXXXXXXXXXXXXXXXGVSVVTE------DLSEATPPRNPSLGGXXXXXXXXXXXXXXXXXXXXXSFDLEDGGHSGYLDDDDEDKTQAKPGDHIHSLLIAFTSTPVGAAVAERLPGLVTWVHQLPPQTLWSAAMAYLGFIHLLVLYKAVTC 5773
++ALALS AQV+AWE+KSLREELEGLRERS ELSS LE R+RE+AA AREGV ELE LR AVG AEAGRE+AE GLARLK+KKKRDLQEVRRLNERMM+LQQ RREEVS LE ++++L+ K LE A A E Q Q XXXXXXXXXXXXXXXXXX G RREEREKE+SLLR LVEKLQREVEGLKSDLEE S GR++A++AK SAAAL RANARIAELT+KSAQLTRARSAMVAQI+ALEEQ + KQ V + DLSE PP P + + DLEDGG GY D+D E K QAKPGDH+ SLLI+ S+PVGAA++ERLPGLVTW+HQ PPQTLW+AA+AYL +HLL YKA+TC
Sbjct: 27 RSALALSETRGALSEAESAAQVAAWESKSLREELEGLRERSEELSSELEATRSREAAATRTAREGVGAELEGLRGAVGAAEAGREQAEEGLARLKEKKKRDLQEVRRLNERMMELQQARREEVSDLEGSLQELRAKTDELEHALAQEE------------------------------------------------------------QHQGXXXXXXXXXXXXXXXXXXXXXG-------------------------PRREEREKELSLLRKLVEKLQREVEGLKSDLEEESTGRSQAQNAKNVSAAALGRANARIAELTSKSAQLTRARSAMVAQINALEEQLKSAALKQAAAATAGGAAETNTTDSGSVADFSTPLRDLSEVPPPSQPPMSADPPMRQRQRHRLSGAGPSSG-NLDLEDGG--GYFDED-EHKAQAKPGDHVKSLLISCASSPVGAAISERLPGLVTWLHQQPPQTLWTAAIAYLALVHLLAGYKAITC 440
BLAST of mRNA_P-littoralis_Contig100.53.155 vs. uniprot
Match: A0A6H5L1J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1J2_9PHAE) HSP 1 Score: 345 bits (884), Expect = 6.130e-92 Identity = 389/841 (46.25%), Postives = 444/841 (52.79%), Query Frame = 2
Query: 3398 ELRAALEDTGREGAAGEAAAAGARAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSKQQELEEAAEAARAQAXXXXXX--------QALREGMAAALEQAEDVASELRHQVNAAESTIADMDAARASADEETAALRADLAAAIDNADRAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELVAETEAALAEALDAERGAGGERVALVEREVEDLRAQLS------------------KAALALSXXXXXXXXXXXXAQVSAWETKSLREELEGLRERSAELSSALETARARESAAAAEAREGVRGELESLREAVGVAEAGREEAEAGLARLKDKKKRDLQEVRRLNERMMQLQQERREEVSRLETAVEQLQRKAHGLEEAGADREEALAQALSERDDLRGQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDQAXXXXXXXXXXXXXXXXXXEYDGRANDPEEKEGTEGFQSDGGDGTGGDARREEREKEVSLLRNLVEKLQREVEGLKSDLEEASAGRAEAEDAKETSAAALIRANARIAELTAK-----------------------SAQLTRARSAMVAQIHALEEQSSKQXXXXXXXXXXXXXXXGVSVVTEDLSEATPPRNPSLGGXXXXXXXXXXXXXXXXXXXXXSFDLEDGGHSGYLDDDDEDKTQAKPGDHIHSLLIAFTSTPVGAAVAERLPGLVTWVHQLPPQTLWSAAMAYLGFIHLLVLYKAVTC 5773
ELRA LE+TGREG A AAGARAEA +Q L EA AA XXXXXX ALRE M ALEQAE+ +SELRHQ+NAAE+TIADMDA RA+A+EETAALRA+LAAA XXXXXXXXXXXXXXXXXX ELVAE EAAL AER G ERVA VEREVE LR +LS ++ALALS XXXXX AQV+AWE+KSLREELEGLRERS ELSS LE ARARE+AA AREGV E+E LR AVG AEAGRE+AE GLARLKDKKKRDLQEVRRLNERMM+LQQ RREEVS LE ++++L+ K L A LA+ALSE+D L+ QAA XXXXXXXXXXXXXXXXXXXXXXXXX + G A + + G EG +S+ GGD RR+EREKE+SLLR LVEKLQREVEGLKSDLEE S GR++AEDAK+ S AAL RANAR SA L +A +A V + A+E ++ G S DLSE PP P + + DLEDGG GY D+D E+K QAKPGDHI SLLI+ S+PVGAA++ERLPGLVTW+HQ PPQTLW+AA+AYL +HLL YK +TC
Sbjct: 1079 ELRAVLEETGREGEA----AAGARAEAEELQGQLEGTRKELREVEEALSSQTSKTEDALARLSSMEQELALMEQALGEARGAAXXXXXXXXXXXXXTAAATSALREEMMLALEQAEEESSELRHQINAAEATIADMDATRAAANEETAALRAELAAAAXX------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXELSAAQEMLRRELVAEREAALG----AERREGAERVAAVEREVEGLRVKLSESEKEHAQNLAAAAAAHERSALALSETRGALXXXXXVAQVAAWESKSLREELEGLRERSEELSSELEAARAREAAATRTAREGVGAEIEGLRRAVGTAEAGREQAEEGLARLKDKKKRDLQEVRRLNERMMELQQARREEVSDLEGSLQELRAKTGELGHA-------LAKALSEKDHLQ-QAATAXXXXXXXXXXXXXXXXXXXXXXXXXPIPSEGTIPVPAGDPNPRPQEPRQEEQHQC----------GGAREEMVRVG-EGLRSEE---RGGDQRRDEREKELSLLRKLVEKLQREVEGLKSDLEEESTGRSQAEDAKDVSTAALGRANARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAALKQAAAATVGR--AVETNTTDSGSVA-----------GFSTPLRDLSEGPPPSQPPMSADPPMRQRQRHRLSGAGLSSG-NLDLEDGG--GYFDED-ENKAQAKPGDHIKSLLISCASSPVGAAISERLPGLVTWLHQQPPQTLWTAAIAYLALVHLLAGYKTITC 1794
BLAST of mRNA_P-littoralis_Contig100.53.155 vs. uniprot
Match: D7FJX4_ECTSI (Methyl-accepting transducer domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX4_ECTSI) HSP 1 Score: 191 bits (484), Expect = 6.850e-45 Identity = 231/410 (56.34%), Postives = 257/410 (62.68%), Query Frame = 2
Query: 581 LDDAFGLDPTSDEFQAVKREMERLARVHASQVERKNKQVKKXXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXIEMENQLSAADEALREEREGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQASLSEANQRLEQALARSTDSERISAELGLEAQRLRERLAAAVAEAGAGNPNSSNDGNKTAAGHLDTATAAEQPPRIEDVAGSDNDDPXXXXXXXXXXXXXXXXXXXXXXXAAASSPLEQETTTIDAATAAAMMMDDLKRDLERATSRLEGQASDLRREQDNTAELEGRLSAEQALSEELRAKAQALSSRAEGAERGEGEAMKAAATEARRAAELREAFEQAEGELLRLRGRVSESEEEEARAAELKGTLETTRDALDELRVTAGQAEATAE 1810
+DDAFGLDPTSDEFQAVKREMERL R HASQV K KQVK+ XXXXXXXXXXX P EME QLSA EAL EE+EGH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+LSEANQRLEQAL+RST+SERISAELGLEAQ+LR+RL+ A+ EA GNK Q P AG D XXXXXXXXXXXXXXXXXX A +D LKRDLE+A RL+ AS L +++ AEL+ L+AE+ +SEELR +QAL +RAEGAER EL RLRGR +E EEEE RAAELKGTLE+TRDALDELRV+AG+AEATAE
Sbjct: 1 MDDAFGLDPTSDEFQAVKREMERLERAHASQVLSKEKQVKRLXXXXXXXXXXXEMAVNEMQPQLQKLVDLVKDSKAEAAEMEEQLSAVTEALHEEKEGHREDVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALSEANQRLEQALSRSTESERISAELGLEAQQLRQRLSEALNEAAVA-------GNK-------------QAPDNASAAGDGTGDGDTGSAXXXXXXXXXXXXXXXXXXXA---------------------IDGLKRDLEQAARRLQDNASTLEEQREQCAELQTSLAAERTISEELREGSQALLARAEGAERXXXXXXXXXXXXXXXXXXXXXXXXXXXAELSRLRGRAAEWEEEERRAAELKGTLESTRDALDELRVSAGEAEATAE 369 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig100.53.155 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig100.53.155 >prot_P-littoralis_Contig100.53.155 ID=prot_P-littoralis_Contig100.53.155|Name=mRNA_P-littoralis_Contig100.53.155|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1892bp MWGLGAIRDGAAGLVKQGAGAVKQGVEAGAKLLENLDENFDGSELGSDYEback to top mRNA from alignment at P-littoralis_Contig100:195235..216776- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig100.53.155 ID=mRNA_P-littoralis_Contig100.53.155|Name=mRNA_P-littoralis_Contig100.53.155|organism=Pylaiella littoralis U1_48|type=mRNA|length=21542bp|location=Sequence derived from alignment at P-littoralis_Contig100:195235..216776- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig100:195235..216776- >mRNA_P-littoralis_Contig100.53.155 ID=mRNA_P-littoralis_Contig100.53.155|Name=mRNA_P-littoralis_Contig100.53.155|organism=Pylaiella littoralis U1_48|type=CDS|length=5676bp|location=Sequence derived from alignment at P-littoralis_Contig100:195235..216776- (Pylaiella littoralis U1_48)back to top |