mRNA_P-littoralis_Contig1295.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1295.5.1
Unique NamemRNA_P-littoralis_Contig1295.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1295.5.1 vs. uniprot
Match: A0A6H5L3T1_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T1_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 2.670e-7
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1 
Query:    1 DEYQSDGG---SEGELPGDLADYEEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRLVQATAQMERNRDVKKAAREEAERESP 258
            D+  SDGG   SEGE PGD ADY++D         GN+  Q +A+  KI E WG E+L  +F LVQ T Q+ ++R+ KK AR E E ++P
Sbjct:  238 DDDMSDGGGEGSEGEFPGDAADYDQD-----VFVSGNSPQQVKAMVDKIQEAWGNEALTFIFGLVQNTKQLVQDRNKKKKARSEVEEDAP 322
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BLAST of mRNA_P-littoralis_Contig1295.5.1 vs. uniprot
Match: A0A6H5JFU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFU5_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.200e-7
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:   13 SDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRLVQATAQMERNRDVKKAAREEAERESP 258
            SDGGSEGE PGD ADY++D         G +  Q  A+  KI E WG+E+L  +F L+Q T Q+ ++R+ KK AR E + ++P
Sbjct:  437 SDGGSEGEFPGDAADYDQD-----VFVSGKSPQQVNAMVDKIQEAWGKEALTFIFGLMQNTKQLVQDRNKKKKARSEVKEDAP 514
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BLAST of mRNA_P-littoralis_Contig1295.5.1 vs. uniprot
Match: A0A6H5K3B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.060e-5
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:    1 DEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRLVQATAQMERNRDVKKAA 231
            D+  SDGGSEGE PGD ADY++D         G +  Q +A+  KI E WG+E+L  +F L Q T Q+ ++R+V+  A
Sbjct:  364 DDDMSDGGSEGEFPGDAADYDQD-----VFVSGKSPQQVKAMVDKIQEAWGKEALTFIFGLAQNTKQLVQDRNVRMGA 436
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BLAST of mRNA_P-littoralis_Contig1295.5.1 vs. uniprot
Match: A0A6H5JFP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP3_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.160e-5
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:    1 DEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALA-KIPERWGRESLKCMFRLVQATAQMERNRDVKKAA 231
            D+  SDGGSEGE PGD  DY++D         G +  Q +A+  KI E WG+E+L  +F LVQ T Q+ ++R+V+  A
Sbjct:  417 DDDMSDGGSEGEFPGDAVDYDQD-----VFVSGKSPQQVKAMVDKIQEAWGKEALAFIFGLVQNTKQLVQDRNVRMGA 489
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BLAST of mRNA_P-littoralis_Contig1295.5.1 vs. uniprot
Match: D7G347_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G347_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 9.770e-5
Identity = 33/64 (51.56%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    1 DEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRLVQAT 192
            DE  SDGGS+GE PGDLADY+E      +  + NA V      KIPE WG  +LK +F LVQ T
Sbjct:  120 DEEMSDGGSDGEFPGDLADYDEPSVTIKSPQQINAMVD-----KIPEGWGMAALKFVFELVQHT 178
[Close]
BLAST of mRNA_P-littoralis_Contig1295.5.1 vs. uniprot
Match: D7FZ42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ42_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 9.900e-5
Identity = 33/64 (51.56%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    1 DEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALAKIPERWGRESLKCMFRLVQAT 192
            DE  SDGGS+GE PGDLADY+E      +  + NA V      KIPE WG+ +LK +F LVQ T
Sbjct:  455 DEEMSDGGSDGEFPGDLADYDEPSVTIKSPQQINAMVD-----KIPEGWGKAALKFVFELVQHT 513
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1295.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L3T1_9PHAE2.670e-745.56DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JFU5_9PHAE5.200e-744.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3B3_9PHAE2.060e-543.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFP3_9PHAE2.160e-543.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G347_ECTSI9.770e-551.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ42_ECTSI9.900e-551.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1295contigP-littoralis_Contig1295:3353..4728 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size681
Hectar predicted targeting categoryother localisation
Exons3
Cds size681
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789579.0828137-CDS-P-littoralis_Contig1295:3352..34421680789579.0828137-CDS-P-littoralis_Contig1295:3352..3442Pylaiella littoralis U1_48CDSP-littoralis_Contig1295 3353..3442 -
1680789579.0930264-CDS-P-littoralis_Contig1295:3859..42341680789579.0930264-CDS-P-littoralis_Contig1295:3859..4234Pylaiella littoralis U1_48CDSP-littoralis_Contig1295 3860..4234 -
1680789579.1041298-CDS-P-littoralis_Contig1295:4512..47281680789579.1041298-CDS-P-littoralis_Contig1295:4512..4728Pylaiella littoralis U1_48CDSP-littoralis_Contig1295 4513..4728 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1295.5.1prot_P-littoralis_Contig1295.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1295 3353..4728 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1295.5.1

>prot_P-littoralis_Contig1295.5.1 ID=prot_P-littoralis_Contig1295.5.1|Name=mRNA_P-littoralis_Contig1295.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=227bp
DEYQSDGGSEGELPGDLADYEEDGEVQVALGKGNAAVQARALAKIPERWG
RESLKCMFRLVQATAQMERNRDVKKAAREEAERESPLFAALREAKLLPRE
DGEGIKDKEVDKGKGATVKMEHPRPQHWSCVGISDGEDMDWVWDGETFEV
VGLESYGGGLGRGDGSGVEGSGADEVTAERKVCYCGGCARSRIIDIEGPL
RGRTFLSCANSSLLNKCEFLELVGEGG
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mRNA from alignment at P-littoralis_Contig1295:3353..4728-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1295.5.1 ID=mRNA_P-littoralis_Contig1295.5.1|Name=mRNA_P-littoralis_Contig1295.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1376bp|location=Sequence derived from alignment at P-littoralis_Contig1295:3353..4728- (Pylaiella littoralis U1_48)
GACGAGTACCAAAGTGACGGTGGCAGTGAAGGAGAGCTACCCGGCGACCT
TGCCGACTACGAGGAAGACGGAGAGGTGCAGGTTGCCTTGGGCAAGGGGA
ACGCAGCCGTACAAGCCAGGGCGTTGGCAAAGATTCCGGAACGTTGGGGG
CGCGAGTCTTTGAAGTGCATGTTCCGCTTGGTCCAAGCTACCGCGCAGAT
GGAAAGAAATCGGGACGTGAGTGCGTGTGTTTGCATGTATGAGTGTGCGT
TTTTTCTGCTGGTTGCTTGGTTCTGCCGTGCGATGACGAGTGATGTTCCC
AAGCGCGATATCGAAACGACCTCTGCCTGATTTGTACTGTAGTCGTTGCA
ATGCCATTTGTATGATGGGCACCCCAGACCTGATAACTTACCCCCCCCCC
CCAAAAGCCTCACCTGGGTTCCCTCTCTTGTTCACTTGATCACCAATCAC
CGATTAAATTTTCATCCACATGCGCCAAACATTTCGAAACAAAGGTGAAA
AAAGCCGCTAGGGAAGAGGCGGAAAGAGAATCGCCACTTTTCGCCGCACT
ACGCGAAGCGAAACTGCTGCCCCGCGAGGACGGAGAGGGGATAAAAGACA
AAGAGGTGGACAAGGGTAAGGGGGCTACTGTCAAAATGGAACACCCTCGA
CCACAACATTGGTCTTGTGTCGGTATTTCCGACGGGGAGGACATGGATTG
GGTGTGGGACGGCGAGACATTTGAAGTAGTGGGATTAGAGAGTTATGGCG
GTGGCCTCGGACGGGGGGATGGATCTGGTGTGGAAGGGAGCGGAGCTGAC
GAGGTAACGGCAGAGCGGAAGGTGTGCTACTGCGGGGGCTGTGCACGATC
GCGTATAATCGACATAGAGGTGAGCCGTCGAAGATTGTGGCCTATTACCA
GCCCTTGCACAGAGGTTTGACGGCATTGCTTGTGTAGAACGATTCTTGCG
TGATGTTGGCCCGGCGTTTCCAACGTCACCCGCCGCTTTATACATGGAAT
GAACCCCGTCGCCTGTTGTATGGTATTCACGAAGCCTTTCTCCCCATTCT
CATATAGAATGAAACTTGAGCGTTCTATGGGTTGGAATGGTAATTGTTAC
CTCAACAACCCGGGCTCGAGGGCAGTCGAGAGACTATACACACATGACAT
GGGCCTGACTGTTTCCGTTATATAACCTGCAAGACTTGAGCTTCGCCACC
ACCGTTCGCGATGCGCCAAACAACACCAATCCTTACGGCGCCCCCCCCAC
TCCCGCCCAACGACTGCCGCAAACCGCTTCATCCAGGGGCCACTCAGAGG
ACGCACCTTTTTGTCGTGCGCGAACAGCAGCTTGCTCAACAAGTGCGAAT
TTCTCGAGTTAGTAGGCGAGGGCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1295:3353..4728-

>mRNA_P-littoralis_Contig1295.5.1 ID=mRNA_P-littoralis_Contig1295.5.1|Name=mRNA_P-littoralis_Contig1295.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=681bp|location=Sequence derived from alignment at P-littoralis_Contig1295:3353..4728- (Pylaiella littoralis U1_48)
GACGAGTACCAAAGTGACGGTGGCAGTGAAGGAGAGCTACCCGGCGACCT
TGCCGACTACGAGGAAGACGGAGAGGTGCAGGTTGCCTTGGGCAAGGGGA
ACGCAGCCGTACAAGCCAGGGCGTTGGCAAAGATTCCGGAACGTTGGGGG
CGCGAGTCTTTGAAGTGCATGTTCCGCTTGGTCCAAGCTACCGCGCAGAT
GGAAAGAAATCGGGACGTGAAAAAAGCCGCTAGGGAAGAGGCGGAAAGAG
AATCGCCACTTTTCGCCGCACTACGCGAAGCGAAACTGCTGCCCCGCGAG
GACGGAGAGGGGATAAAAGACAAAGAGGTGGACAAGGGTAAGGGGGCTAC
TGTCAAAATGGAACACCCTCGACCACAACATTGGTCTTGTGTCGGTATTT
CCGACGGGGAGGACATGGATTGGGTGTGGGACGGCGAGACATTTGAAGTA
GTGGGATTAGAGAGTTATGGCGGTGGCCTCGGACGGGGGGATGGATCTGG
TGTGGAAGGGAGCGGAGCTGACGAGGTAACGGCAGAGCGGAAGGTGTGCT
ACTGCGGGGGCTGTGCACGATCGCGTATAATCGACATAGAGGGGCCACTC
AGAGGACGCACCTTTTTGTCGTGCGCGAACAGCAGCTTGCTCAACAAGTG
CGAATTTCTCGAGTTAGTAGGCGAGGGCGGC
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