mRNA_P-littoralis_Contig1295.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1295.4.1
Unique NamemRNA_P-littoralis_Contig1295.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1295.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1295contigP-littoralis_Contig1295:2322..3290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog37682.EMT10995
PFAMsRNase_T,zf-GRF
Model size216
Max annot lvl35493|Streptophyta
KEGG koko:K18416,ko:K18417
Hectar predicted targeting categoryother localisation
GOsGO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Exons2
Evalue0.000234
EggNOG OGsCOG5018@1|root,KOG0542@2759|Eukaryota,37K8N@33090|Viridiplantae,3GG3Z@35493|Streptophyta,3KQB5@4447|Liliopsida,3I91B@38820|Poales
DescriptionExonuclease
Cds size213
COG categoryL
BRITEko00000,ko01000,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789578.9064248-CDS-P-littoralis_Contig1295:2323..23921680789578.9064248-CDS-P-littoralis_Contig1295:2323..2392Pylaiella littoralis U1_48CDSP-littoralis_Contig1295 2324..2392 -
1680789578.9220648-CDS-P-littoralis_Contig1295:3146..32901680789578.9220648-CDS-P-littoralis_Contig1295:3146..3290Pylaiella littoralis U1_48CDSP-littoralis_Contig1295 3147..3290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1295.4.1prot_P-littoralis_Contig1295.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1295 2324..3290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1295.4.1

>prot_P-littoralis_Contig1295.4.1 ID=prot_P-littoralis_Contig1295.4.1|Name=mRNA_P-littoralis_Contig1295.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
GNGGCGELGRRCESDVEDVEGRRANDVAARRTVCYCGAPARSRTIRIEGP
LKGRTFSSCANRTLVDRCALR
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mRNA from alignment at P-littoralis_Contig1295:2322..3290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1295.4.1 ID=mRNA_P-littoralis_Contig1295.4.1|Name=mRNA_P-littoralis_Contig1295.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=969bp|location=Sequence derived from alignment at P-littoralis_Contig1295:2322..3290- (Pylaiella littoralis U1_48)
GGTAATGGCGGCTGCGGGGAGCTCGGACGGAGGTGTGAGTCTGATGTGGA
AGATGTGGAAGGGAGACGAGCTAACGACGTAGCCGCGCGGCGGACGGTGT
GCTACTGTGGGGCCCCTGCACGATCGCGGACTATCAGGATAGAGGTGAGC
TGCCGCCAAAAGTATTATTGTGTTTTGATTACGTTACTTGATTACTTTTG
ACTCCTGTGTGCGTGTTGCGTTCCCAAACATCACCCGCCGCCTTTGCGAC
GGAGATAACCCGCGGTCTGTTCGATTGCAAACCACCCGTTACCTCCTCCA
ACACACTGAATCAAACGTCACGAGTGATAGGGTTGGCGGCGCGAAGTTCA
TCCCGATAATTGGGATAAATGATTCGGTCGTTATACCTTGGACCCCCCTG
GGGCTTGAAAAACAAATCATGGAGCAAAAAAATAACTGATTCCGGTGCGC
GCCGATGATTGGTGAAAATGATGGACAGTCTGAAAACAAAATACTGACGT
CTCGCTGACTCTCTACGGTGAAAAAAAGATTGACTTGGGCATAAGAGGGA
AGATACTAACACACAACAAACCTAACGGTCGGGCGCGCTTGCTCTCCCGT
AATAATAAAAAAAACTAAATGTGGCACCGAGGCAGCCAACGATTGGTCGA
TCCACGTACATTCCATCGAGCGAGCGCACGGAACCACACCCAAAATACCT
GTAGATAGCCGCCTTCAAAACCCAAGTCACAAAAAATAACAGGTGTCCCC
AAATCGTCTCCAATTGGGATTGGGCGGTCAGAGGGTTGAATCTACCCCGT
TTGAGATTCGCCAGCACAGTTTCCGGAACGTCACTTAACTCAATCCTCAC
GGCGCCCCCCACATCCGCTTAATGCCTGCTGCAATCCGCTTCACCCAGGG
ACCTCTCAAAGGGCGCACGTTTTCTTCGTGCGCGAACAGAACCTTGGTCG
ACCGGTGCGCTTTACGAGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1295:2322..3290-

>mRNA_P-littoralis_Contig1295.4.1 ID=mRNA_P-littoralis_Contig1295.4.1|Name=mRNA_P-littoralis_Contig1295.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig1295:2322..3290- (Pylaiella littoralis U1_48)
GGTAATGGCGGCTGCGGGGAGCTCGGACGGAGGTGTGAGTCTGATGTGGA
AGATGTGGAAGGGAGACGAGCTAACGACGTAGCCGCGCGGCGGACGGTGT
GCTACTGTGGGGCCCCTGCACGATCGCGGACTATCAGGATAGAGGGACCT
CTCAAAGGGCGCACGTTTTCTTCGTGCGCGAACAGAACCTTGGTCGACCG
GTGCGCTTTACGA
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