mRNA_P-littoralis_Contig1294.20.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1294.20.1
Unique NamemRNA_P-littoralis_Contig1294.20.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1294.20.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1294contigP-littoralis_Contig1294:37966..40133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size223
Hectar predicted targeting categoryother localisation
Exons2
Cds size222
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789578.8608446-CDS-P-littoralis_Contig1294:37965..380631680789578.8608446-CDS-P-littoralis_Contig1294:37965..38063Pylaiella littoralis U1_48CDSP-littoralis_Contig1294 37966..38063 -
1680789578.8737714-CDS-P-littoralis_Contig1294:40009..401331680789578.8737714-CDS-P-littoralis_Contig1294:40009..40133Pylaiella littoralis U1_48CDSP-littoralis_Contig1294 40010..40133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1294.20.1prot_P-littoralis_Contig1294.20.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1294 37966..40133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1294.20.1

>prot_P-littoralis_Contig1294.20.1 ID=prot_P-littoralis_Contig1294.20.1|Name=mRNA_P-littoralis_Contig1294.20.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=74bp
MGFLKWLDETANFTNLPSWLDKDIMGRNAFGPDILNEAKADGTKGVLFDE
SALTLWRGKFQDTACHIRGVWNPI
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mRNA from alignment at P-littoralis_Contig1294:37966..40133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1294.20.1 ID=mRNA_P-littoralis_Contig1294.20.1|Name=mRNA_P-littoralis_Contig1294.20.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2168bp|location=Sequence derived from alignment at P-littoralis_Contig1294:37966..40133- (Pylaiella littoralis U1_48)
ATGGGCTTCCTCAAGTGGTTGGACGAGACGGCCAACTTTACGAACCTCCC
ATCCTGGTTGGACAAGGACATTATGGGGCGCAACGCGTTCGGACCAGACA
TACTGAACGAGGCCAAGGCCGACGGTGAGATGGGCTTGGCGGGCACGGCG
TACATGCATTTTTGCAATTTTGCCCCTCTGCTGCAGAGAGATCTGCATGA
GCCGCTGTGGACAATCGCAGCCGCCAGTCGTGAAGTTTGTCGAGTCTGAT
GTAGCTCGGACTGCGATAAACAATGCGAAGATCAAGTACAGCAGGAGTAC
AGCAGTAATGTTGTTGTGGCCGCCGGTTTGGCGGCGGTGTCAGACCATCC
TCTCTCCGAGATGGATCCAGTTTACGTTCAACCGCTGCCTCTCGAGCATA
ACCGCAGGGAGTTGACGTGTTCACGGTGTGGCGTCGGTATACTGCGCACG
ATACCCAGCTCGCACTGCGGCATTGATCGCGACACGGAGCGCTCTTCGGC
CGCTTACATCCCTTTCATAAAAACAGCATCACGAAATAGTAGCAGCAGAC
GTACCAGTGGGTTGGGGTTGAGACGCAGTGTGCGTTGGAGGGCCACTTCT
CAAATAACTGCGTTGAGCCGTGTGCGTTGCTGTTTGGTGGCGTATAATAT
GCCTACTGCTTCACAGCAGTGCTGCTGCTGCAGAACAGCTGGTGATGTGT
TGGCGGTGTGTGCGTGTGCGCCAGCACAACGAACACAAAACATCTCTCAT
CATTTTTCACAAAAAAGGGAACCCAATATTAACGCGCCTGACAAGATAGC
TGTGCGCACAGGACACGGGCTGCGGTGAACCCAGCAGCAGAGGGTAGACC
CTATTTACCTCATCACTTCAAGCCCTTAGTCGTAGCGATCTGTGCTGAAC
TGGTGTCAAAGTGTTGCAAAACGTGGCCATAATCTCGGACACACACAGAC
AGGTACCGAAAACCTCAAAAATGAAATAAAGGCACCCCTGTCTCCGATTG
TTTTTTTTATTCACACATACACTCACACCTTCACATTACGACAAGTCGGT
ATGAATTCGAAGCAGTTCGACAAGGAACTCACACTTTGCTTCGCTCGTGG
CCTGCTTCTCGCTAAAGTAAATGCCAACGAATACCAGCACACGTCATGCA
TTTCGCACAACAGGAAACTCAGCGGAAGCAACAGCAGCAGCACGCTTCTC
ACCGCTATGGTGTGCATTATCCTGAGACCATGCCTAATCCCGGAACTCCT
TGCGCGTTAAAGGCGTTTCAGCCTCCCCTCTCGTGCCTGCCTTGTACTAC
GGCAGTAGCTATGGCGAAAATGTATCTAAGAGGCGAACCTCAACGTTTGG
CATTTCGCGTGAGAACACCCCTACGATTGGATCTATCTTCGCCCATCCGC
CCCCAAGAAACTTCACTGTAACGATAATTTCGAAACACCCCTTGTGACAC
CTTTGGCAAGTATTTTGTACTTCGTAAACGGAAGAGCGTGTGTTCGTCCC
AATTTTACTGGGTACCAGTCCACACCTTTCGGTATGAAGTAGGTGCATCA
GCCGGAGTCACACAAAAGGAGGGTCACGCACGAGCTTTCTAGTTTTTTGT
TTTGTTTGAATGCCTCACACCTTTCCTCCTGTGGCTCTTGCCTTTGGTTT
TGAATGCGAGTCGGGTTCAGCAATCCGTTCCCTCTGTTTAATTAGTCACG
AACAAATCGCTTTACGGCTCTTTTGAATTCACAGTGATGCCAAAACCGCA
AGAAGAATCTCGAAGGAAAAAAACACTTGGGTGGAACGCATAAAGAAAAA
CAAAAAAAAGTGCGCAAACTGTGTCTCGTAGGGAAGGCGTTTTATGATTT
GTTTTAAGATCCCCCCGGGGCAAATCAAAGGTGTCATGCTTCAAGGCTGA
AAAGTAATAGGTAGGGGTGACACCATACGGGGGAGTACGACAACGGTCTC
TACGGTATTTACAGATTCAAGTCGTTTTGCAGTCTGCCGTCGCACACCGA
ACGAATGAAAAGCTCATGTAAACCCTGCACTTGCTATGTATTCCCCGTGT
ACTTTCTTAACTTCACACAGGCACGAAGGGGGTTCTGTTTGACGAATCGG
CCCTAACCCTTTGGCGGGGGAAGTTCCAAGATACAGCCTGTCACATCCGG
GGCGTATGGAACCCTATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1294:37966..40133-

>mRNA_P-littoralis_Contig1294.20.1 ID=mRNA_P-littoralis_Contig1294.20.1|Name=mRNA_P-littoralis_Contig1294.20.1|organism=Pylaiella littoralis U1_48|type=CDS|length=222bp|location=Sequence derived from alignment at P-littoralis_Contig1294:37966..40133- (Pylaiella littoralis U1_48)
ATGGGCTTCCTCAAGTGGTTGGACGAGACGGCCAACTTTACGAACCTCCC
ATCCTGGTTGGACAAGGACATTATGGGGCGCAACGCGTTCGGACCAGACA
TACTGAACGAGGCCAAGGCCGACGGCACGAAGGGGGTTCTGTTTGACGAA
TCGGCCCTAACCCTTTGGCGGGGGAAGTTCCAAGATACAGCCTGTCACAT
CCGGGGCGTATGGAACCCTATT
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