mRNA_P-littoralis_Contig1294.19.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1294.19.1
Unique NamemRNA_P-littoralis_Contig1294.19.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1294.19.1 vs. uniprot
Match: A0A6H5KB89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB89_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.600e-19
Identity = 56/133 (42.11%), Postives = 74/133 (55.64%), Query Frame = 1 
Query:    1 MPANYVHKMSLVFALLGRPAGPGREHHELSVAYSSGPTVEVEESGGGKGSNLR---------SPASIKDMKKEGKKGAGLPVSRGEKRKEMADDRKKAKQEKRDEREAATTARFLAVLEKPQESQADIVLVDY 372
            MPANYVHK SL+FAL GRPAG   E+H LS+   SGP  E                      SPASI+D+KK+G  GAG+P SR E++K+        K+EK  +      A  L +L+ P ES+AD V++D+
Sbjct:    1 MPANYVHKYSLIFALPGRPAGKQHEYHCLSLESGSGPDGEXXXXXXXXXXXXXXXXXXXXXXSPASIRDLKKQGATGAGIPASRTERKKDXXXXXXXVKREKAAQETKEFNAELLGLLKNPVESEADRVIIDF 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1294.19.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KB89_9PHAE9.600e-1942.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1294contigP-littoralis_Contig1294:36612..36995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size385
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789578.8288188-CDS-P-littoralis_Contig1294:36611..369951680789578.8288188-CDS-P-littoralis_Contig1294:36611..36995Pylaiella littoralis U1_48CDSP-littoralis_Contig1294 36612..36995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1294.19.1prot_P-littoralis_Contig1294.19.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1294 36612..36995 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1294.19.1

>prot_P-littoralis_Contig1294.19.1 ID=prot_P-littoralis_Contig1294.19.1|Name=mRNA_P-littoralis_Contig1294.19.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=128bp
MPANYVHKMSLVFALLGRPAGPGREHHELSVAYSSGPTVEVEESGGGKGS
NLRSPASIKDMKKEGKKGAGLPVSRGEKRKEMADDRKKAKQEKRDEREAA
TTARFLAVLEKPQESQADIVLVDYMMVL
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mRNA from alignment at P-littoralis_Contig1294:36612..36995-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1294.19.1 ID=mRNA_P-littoralis_Contig1294.19.1|Name=mRNA_P-littoralis_Contig1294.19.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig1294:36612..36995- (Pylaiella littoralis U1_48)
ATGCCCGCGAACTATGTGCACAAGATGAGCTTGGTATTCGCGTTGTTGGG
GAGGCCGGCGGGACCTGGAAGAGAGCACCACGAGTTGAGCGTAGCATATT
CTTCTGGCCCGACAGTCGAAGTCGAGGAGAGCGGTGGCGGAAAGGGGAGC
AACCTTCGGTCCCCCGCATCAATCAAGGACATGAAGAAAGAGGGTAAGAA
GGGAGCGGGGTTGCCTGTCAGCAGAGGCGAGAAGAGAAAGGAGATGGCAG
ACGACAGGAAAAAGGCAAAGCAAGAGAAGAGGGATGAACGCGAGGCTGCA
ACAACTGCCCGTTTCCTGGCCGTCTTGGAGAAACCTCAGGAAAGCCAGGC
CGACATCGTGCTCGTCGATTACATGATGGTGCTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1294:36612..36995-

>mRNA_P-littoralis_Contig1294.19.1 ID=mRNA_P-littoralis_Contig1294.19.1|Name=mRNA_P-littoralis_Contig1294.19.1|organism=Pylaiella littoralis U1_48|type=CDS|length=384bp|location=Sequence derived from alignment at P-littoralis_Contig1294:36612..36995- (Pylaiella littoralis U1_48)
ATGCCCGCGAACTATGTGCACAAGATGAGCTTGGTATTCGCGTTGTTGGG
GAGGCCGGCGGGACCTGGAAGAGAGCACCACGAGTTGAGCGTAGCATATT
CTTCTGGCCCGACAGTCGAAGTCGAGGAGAGCGGTGGCGGAAAGGGGAGC
AACCTTCGGTCCCCCGCATCAATCAAGGACATGAAGAAAGAGGGTAAGAA
GGGAGCGGGGTTGCCTGTCAGCAGAGGCGAGAAGAGAAAGGAGATGGCAG
ACGACAGGAAAAAGGCAAAGCAAGAGAAGAGGGATGAACGCGAGGCTGCA
ACAACTGCCCGTTTCCTGGCCGTCTTGGAGAAACCTCAGGAAAGCCAGGC
CGACATCGTGCTCGTCGATTACATGATGGTGCTG
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