mRNA_P-littoralis_Contig1294.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1294.12.1
Unique NamemRNA_P-littoralis_Contig1294.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1294.12.1 vs. uniprot
Match: A0A6H5JXZ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.760e-18
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 2 
Query:    2 KVTLSMLLASKDPPRGCQLCLCDVGGYPSIGIPTDEKDDRGYTVWENYRGVFSHCAGARSRDGKTFKNATVASGDIVGKRCLC 250
            +V+ S+L A    P  CQLCL  VGG PS+G+ + EK+ +G   W N    ++ C GA++ DG+ +KNAT+A+GDIVG+ C C
Sbjct:   66 QVSCSILSARGSDPPICQLCLTSVGGTPSLGVLSGEKNSQGRDEWLNIHACWTICCGAKTSDGEKYKNATLATGDIVGRACKC 148
[Close]
BLAST of mRNA_P-littoralis_Contig1294.12.1 vs. uniprot
Match: A0A6H5JLP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLP4_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.630e-17
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 2 
Query:    2 KVTLSMLLASKDPPRGCQLCLCDVGGYPSIGIPTDEKDDRGYTVWENYRGVFSHCAGARSRDGKTFKNATVASGDIVGKRCLCWD 256
            +V+ S L      P  C+LCL  VGG PS+G+ + EK D+G   W N   V+  CAGA + DG  +KNAT+A+G+IVG+ C C+D
Sbjct:   66 QVSCSFLSERGPNPVKCELCLTPVGGTPSLGVLSGEKTDQGRGEWLNIHAVWKLCAGATTSDGGKYKNATLATGEIVGRPCSCFD 150
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1294.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXZ5_9PHAE1.760e-1845.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLP4_9PHAE2.630e-1745.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1294contigP-littoralis_Contig1294:24906..25948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G4Z8
PFAMsDimer_Tnp_hAT
Model size280
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.47e-05
EggNOG OGs2CZK4@1|root,2SARG@2759|Eukaryota
Cds size264
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789578.7703457-CDS-P-littoralis_Contig1294:24905..249501680789578.7703457-CDS-P-littoralis_Contig1294:24905..24950Pylaiella littoralis U1_48CDSP-littoralis_Contig1294 24906..24950 -
1680789578.785088-CDS-P-littoralis_Contig1294:25499..256031680789578.785088-CDS-P-littoralis_Contig1294:25499..25603Pylaiella littoralis U1_48CDSP-littoralis_Contig1294 25500..25603 -
1680789578.794345-CDS-P-littoralis_Contig1294:25817..259321680789578.794345-CDS-P-littoralis_Contig1294:25817..25932Pylaiella littoralis U1_48CDSP-littoralis_Contig1294 25818..25932 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789578.803231-UTR-P-littoralis_Contig1294:25932..259481680789578.803231-UTR-P-littoralis_Contig1294:25932..25948Pylaiella littoralis U1_48UTRP-littoralis_Contig1294 25933..25948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1294.12.1prot_P-littoralis_Contig1294.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1294 24906..25932 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1294.12.1

>prot_P-littoralis_Contig1294.12.1 ID=prot_P-littoralis_Contig1294.12.1|Name=mRNA_P-littoralis_Contig1294.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=88bp
MLLASKDPPRGCQLCLCDVGGYPSIGIPTDEKDDRGYTVWENYRGVFSHC
AGARSRDGKTFKNATVASGDIVGKRCLCWDGKTAVSKD
back to top

mRNA from alignment at P-littoralis_Contig1294:24906..25948-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1294.12.1 ID=mRNA_P-littoralis_Contig1294.12.1|Name=mRNA_P-littoralis_Contig1294.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1043bp|location=Sequence derived from alignment at P-littoralis_Contig1294:24906..25948- (Pylaiella littoralis U1_48)
CAAGGTCACGCTGTCCATGCTGCTCGCCAGCAAGGATCCCCCGCGCGGCT
GCCAGCTGTGCCTGTGTGACGTCGGGGGCTACCCTTCCATTGGTATCCCC
ACAGACGAGAAGGACGACCGTGGCTACACCGGTGAGAGATTGTTTCGTCC
CGTTTTTCCATCGAGGTCACGCTGTACTGCCACCAGCACCTTTCCCATGA
ATCTGTTGCTTTTTTTTTTCATGCCTCGCACAATTTTTCAAGGTCACGCT
GTACCGCCACCAGCACCTTTCCCATGAATCTGTTGTTGTTTTTTTCATGC
TGCTTTTCTCGTGTTTGTCCCGTTCGGTACACATATTTTTGGCAGTGTGG
GAGAACTACCGCGGCGTCTTCTCGCACTGCGCAGGAGCCAGGAGCCGCGA
CGGCAAAACCTTCAAGAACGCAACCGTCGCTAGCGGTGACATCGTCGGCG
TAAGTTGAACGGTTGTGTGTCATGTCCGCCATGATGACCGTCGTATATGC
TGTTTTTTGTCATGTGATGAAGAGACCTGCCCCCGTCTGTTTTTCCATTT
TCTTTTTATATGCTGTTTTCACCCCATGTAGTTAAAAAGAACAAAGAGCC
GACCCCGTATATTATTTTTATAGTAATTACGTATGCCGTTACACTGCTGT
ACCTCTCTTCTTCCTCCCGCTTCCGCCTGCCCCTCCCGCTCTCCATTTAT
TTCCCTCACCGTCGTTGACGGTGACATCATCGGCGTTAGTTGTACGGTTG
CATGTTATCTCCGACATCATGACCGTCGTGCTGTTTTTTTGTCGCGTGAT
AAAGAAGACCTGCCCCCGTCTATTTTTCCGTTTTCTTTTTATATGCCGTT
TTTATCCCATGTCGTTCAAAAGAGCCGCCCCAGTCTATTTCTGTTATCAT
AATTACGTGCGCCGTAACTCTGTACCTCTCTCTCCCTCCCCCTTCGCCCT
TCCCTCCCGCTCTCCCTTTATTTCCCTTCCTCAATCCGAAAATAACAGAA
GAGGTGCCTGTGCTGGGACGGAAAGACCGCCGTCTCCAAGGAC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1294:24906..25948-

>mRNA_P-littoralis_Contig1294.12.1 ID=mRNA_P-littoralis_Contig1294.12.1|Name=mRNA_P-littoralis_Contig1294.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=264bp|location=Sequence derived from alignment at P-littoralis_Contig1294:24906..25948- (Pylaiella littoralis U1_48)
ATGCTGCTCGCCAGCAAGGATCCCCCGCGCGGCTGCCAGCTGTGCCTGTG
TGACGTCGGGGGCTACCCTTCCATTGGTATCCCCACAGACGAGAAGGACG
ACCGTGGCTACACCGTGTGGGAGAACTACCGCGGCGTCTTCTCGCACTGC
GCAGGAGCCAGGAGCCGCGACGGCAAAACCTTCAAGAACGCAACCGTCGC
TAGCGGTGACATCGTCGGCAAGAGGTGCCTGTGCTGGGACGGAAAGACCG
CCGTCTCCAAGGAC
back to top