mRNA_P-littoralis_Contig1294.7.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1294.7.1
Unique NamemRNA_P-littoralis_Contig1294.7.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1294.7.1 vs. uniprot
Match: D7FPL3_ECTSI (V-type h-atpase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPL3_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 2.400e-119
Identity = 175/187 (93.58%), Postives = 182/187 (97.33%), Query Frame = 1 
Query:  121 MTTSQEVFCTNDYCNAGWPEVLTHMSPYGWANLGIAFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKISDPPEDLETYEWTTAYFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFPQV 681
            MT+S EVFCTND CNAGWPEVLTHMSP+GWANLGI FALGLSVLGAGWGIFLTGSSIMGAA+KAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKI DPPED+E+YEWTTA+FAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSN A+FPQV
Sbjct:    1 MTSSTEVFCTNDLCNAGWPEVLTHMSPWGWANLGIGFALGLSVLGAGWGIFLTGSSIMGAAVKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKIQDPPEDIESYEWTTAFFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNVADFPQV 187
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BLAST of mRNA_P-littoralis_Contig1294.7.1 vs. uniprot
Match: A0A835YTX8_9STRA (V-type h-atpase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTX8_9STRA)

HSP 1 Score: 302 bits (773), Expect = 1.780e-101
Identity = 153/186 (82.26%), Postives = 168/186 (90.32%), Query Frame = 1 
Query:  124 TTSQEVFCTNDYCNAGWPEVLTHMSPYGWANLGIAFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKISDPPEDLET--YEWTTAYFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFP 675
            T+  EV C++D+CN GWP+VLTHMSP+GWA +GIAFALG S++GA WGIF+TGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIIL NKISDPP   +T  YEWTTA+FAGYALF  GLGVGLTNLASG+SVG+AGS+CAL DAQD SLFVKILIVEIFASALGIFGIIVGIIQSNSA FP
Sbjct:    4 TSPSEVLCSSDHCNQGWPDVLTHMSPFGWAYMGIAFALGFSIVGAAWGIFVTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILLNKISDPPAPADTASYEWTTAFFAGYALFSAGLGVGLTNLASGVSVGIAGSSCALADAQDGSLFVKILIVEIFASALGIFGIIVGIIQSNSAAFP 189
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BLAST of mRNA_P-littoralis_Contig1294.7.1 vs. uniprot
Match: B8BS55_THAPS (V-type h-atpase subunit n=5 Tax=Bacillariophyta TaxID=2836 RepID=B8BS55_THAPS)

HSP 1 Score: 271 bits (694), Expect = 1.840e-89
Identity = 137/181 (75.69%), Postives = 156/181 (86.19%), Query Frame = 1 
Query:  145 CTNDYCNAGWPEVLTHMSPYGWANLGIAFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKISDPPEDL----ETYEWTTAYFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFP 675
            C + YCNAGW EVLTHMSPYG+AN GIAF LGLSV+GA WGI+LTGSS++GAA+KAPRIRSKNL+SVIFCEATAIYGVIMAIIL NK+  P E +    E ++W   Y+AGY +F  GL VGLTN+ASG+SVG+AGS+CA+GDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNS  FP
Sbjct:    6 CYSTYCNAGWSEVLTHMSPYGYANFGIAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILANKVKKPDEAVSQLSENWDWPGYYYAGYGMFSSGLSVGLTNIASGVSVGIAGSSCAIGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSCTFP 186
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BLAST of mRNA_P-littoralis_Contig1294.7.1 vs. uniprot
Match: A0A6T7QKL8_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A6T7QKL8_9STRA)

HSP 1 Score: 270 bits (690), Expect = 7.440e-89
Identity = 136/181 (75.14%), Postives = 155/181 (85.64%), Query Frame = 1 
Query:  145 CTNDYCNAGWPEVLTHMSPYGWANLGIAFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKISDPPEDLET----YEWTTAYFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFP 675
            C++ YCN GW EVLTHMSPYG+AN GIAF LGLSV+GA WGI+LTGSS++GAA+KAPRIRSKNL+SVIFCEATAIYGVIMAIIL NK+  P E L T    ++W   Y+AGY +F  GL VGLTN+ASG+SVG+AGS+CA+GDAQD SLFVKILIVEIFASALGIFGIIVGIIQSNS  FP
Sbjct:    6 CSSAYCNQGWSEVLTHMSPYGYANFGIAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILANKVKKPEEALSTLGEDWDWAGYYYAGYGMFSSGLSVGLTNIASGVSVGIAGSSCAIGDAQDPSLFVKILIVEIFASALGIFGIIVGIIQSNSCTFP 186
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BLAST of mRNA_P-littoralis_Contig1294.7.1 vs. uniprot
Match: A0A7R9W489_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W489_9STRA)

HSP 1 Score: 269 bits (688), Expect = 1.450e-88
Identity = 135/185 (72.97%), Postives = 159/185 (85.95%), Query Frame = 1 
Query:  130 SQEVFCTNDYCNAGWPEVLTHMSPYGWANLGIAFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKISDPPEDL---ETYEWTTAYFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFP 675
            S + +C++ YCN GW EVL+HMSPYG+AN G+AF LGLSV+GA WGI+LTGSS++GAA+KAPRIRSKNL+SVIFCEATAIYGVIMAIIL+NKI  P +     E ++WT  Y+AGY +F  GL VGLTN+ASGISVG+AGS+CA+GDAQDASLFVKILIVEIFASALGIFGIIVGIIQSN+   P
Sbjct:    2 SNQDYCSSKYCNEGWLEVLSHMSPYGYANFGVAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILSNKIKKPDDSANFDENWDWTGFYYAGYGMFSAGLSVGLTNVASGISVGIAGSSCAIGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNACTIP 186
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BLAST of mRNA_P-littoralis_Contig1294.7.1 vs. uniprot
Match: A0A6U1PSC4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1PSC4_9STRA)

HSP 1 Score: 268 bits (684), Expect = 5.870e-88
Identity = 135/182 (74.18%), Postives = 154/182 (84.62%), Query Frame = 1 
Query:  145 CTNDYCNAGWPEVLTHMSPYGWANLGIAFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKISDPPEDL----ETYEWTTAYFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFPQ 678
            C  ++CN GW EVLT+MSPYGWAN GIA  LG SV GA WGI+LTGSS++GAAIKAPRIRSKNL+SVIFCEATAIYGVI+AIIL NK+ +P +      E ++W T YFAGYA+F  GL VGLTN+ASG+SVG+AGS+CALGDAQD  LFVKILIVEIFASALGIFGIIVGIIQSNSA FP+
Sbjct:    4 CVGEFCNYGWSEVLTNMSPYGWANFGIAIGLGFSVAGAAWGIWLTGSSLVGAAIKAPRIRSKNLISVIFCEATAIYGVILAIILLNKVVEPEDKSGTFPENWDWNTFYFAGYAVFTSGLSVGLTNIASGVSVGIAGSSCALGDAQDPGLFVKILIVEIFASALGIFGIIVGIIQSNSAAFPE 185
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BLAST of mRNA_P-littoralis_Contig1294.7.1 vs. uniprot
Match: A0A7S1FY18_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY18_9STRA)

HSP 1 Score: 267 bits (683), Expect = 8.620e-88
Identity = 132/179 (73.74%), Postives = 156/179 (87.15%), Query Frame = 1 
Query:  142 FCTNDYCNAGWPEVLTHMSPYGWANLGIAFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKISDPPEDL-ETYEWTTAYFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFP 675
            +C ++YCN GW E+ +HMSPYG+AN GIAF LG SV+GA WGI+LTGSS++GAA+KAPRIRSKNL+SVIFCEATAIYGVIMAIIL+NKI  P + + E ++W   Y+AGY +F  GL VGLTN+ASGISVG+AGSACA+GDAQDASLFVK+LIVEIFASALGIFGIIVGIIQSN+  FP
Sbjct:    7 YCESEYCNQGWNELFSHMSPYGYANFGIAFGLGFSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILSNKIKTPEDAMGEDWDWNGFYYAGYGMFSAGLSVGLTNIASGISVGIAGSACAIGDAQDASLFVKVLIVEIFASALGIFGIIVGIIQSNACTFP 185
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BLAST of mRNA_P-littoralis_Contig1294.7.1 vs. uniprot
Match: A0A7S3LBA5_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LBA5_9STRA)

HSP 1 Score: 267 bits (682), Expect = 1.270e-87
Identity = 132/186 (70.97%), Postives = 161/186 (86.56%), Query Frame = 1 
Query:  130 SQEVFCTNDYCNAGWPEVLTHMSPYGWANLGIAFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKISDPPEDL----ETYEWTTAYFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFP 675
            S ++ C +++CN GW +VLTHMSPYG+A+ G+AF LGLS++GA WGI+LTGSS++GAA+KAPRIRSKNL+SVIFCEATAIYGVIMAIILTNKI +P ++     E ++W   Y+AGY +F  GL VGLTN+ASG+SVG+AGS+CA+GDAQDASLFVKILIVEIFASALGIFGIIVGIIQSN+  FP
Sbjct:    2 SNKMTCQSEFCNQGWSDVLTHMSPYGFASFGVAFGLGLSIVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILTNKIKEPEDNGFYLDENWDWAGYYYAGYGMFSAGLSVGLTNIASGVSVGIAGSSCAIGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNACIFP 187
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BLAST of mRNA_P-littoralis_Contig1294.7.1 vs. uniprot
Match: A0A7S1U6D2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6D2_9STRA)

HSP 1 Score: 264 bits (675), Expect = 1.370e-86
Identity = 135/189 (71.43%), Postives = 156/189 (82.54%), Query Frame = 1 
Query:  121 MTTSQEVFCTNDYCNAGWPEVLTHMSPYGWANLGIAFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKISDPPED----LETYEWTTAYFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFP 675
            M+ +    C  + CN GW EVLTH+SPY W N+GIAF LGLSVLGA WGI++TGSS++GAA+KAPRIRSKNLVSVIFCEATAIYGVI+AIIL N I DP E      E ++W T YF+GYA+F  GLGVGLTNLASGISVG+AGS+CAL DAQ++ LFVK+LIVEIFASALGIFGIIVGII SN A+FP
Sbjct:    1 MSLNSAYGCEGELCNKGWEEVLTHISPYWWGNVGIAFGLGLSVLGAAWGIWITGSSLVGAAVKAPRIRSKNLVSVIFCEATAIYGVIIAIILMNHIKDPEEKGYTIQEDWDWNTFYFSGYAVFAAGLGVGLTNLASGISVGIAGSSCALADAQNSDLFVKMLIVEIFASALGIFGIIVGIIMSNDADFP 189
[Close]
BLAST of mRNA_P-littoralis_Contig1294.7.1 vs. uniprot
Match: A0A7S2PCT9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCT9_9STRA)

HSP 1 Score: 264 bits (674), Expect = 2.220e-86
Identity = 133/183 (72.68%), Postives = 154/183 (84.15%), Query Frame = 1 
Query:  145 CTNDYCNAGWPEVLTHMSPYGWANLGIAFALGLSVLGAGWGIFLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKISDPPEDL-----ETYEWTTAYFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQDASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFPQ 678
            C + YCN GW EVLTHMSPYGWA+ G+AF LGLSV+GA WGI+LTGSS++GAA+KAPRIRSKNL+SVIFCEATAIYGVIMAIILTNKI  P +       + +++   YFAGY +F  GL VGLTN+ASGISVG+AGS+CA+ DAQD SLFVKILIVEIFASALGIFGIIVGIIQSN+  FP+
Sbjct:    8 CQSAYCNQGWSEVLTHMSPYGWASFGVAFGLGLSVVGAAWGIWLTGSSLVGAAVKAPRIRSKNLISVIFCEATAIYGVIMAIILTNKIKSPEDGYGNQLPDGWDYNEYYFAGYGMFSAGLSVGLTNIASGISVGIAGSSCAIADAQDPSLFVKILIVEIFASALGIFGIIVGIIQSNACTFPE 190
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1294.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPL3_ECTSI2.400e-11993.58V-type h-atpase subunit n=1 Tax=Ectocarpus silicul... [more]
A0A835YTX8_9STRA1.780e-10182.26V-type h-atpase subunit n=1 Tax=Tribonema minus Ta... [more]
B8BS55_THAPS1.840e-8975.69V-type h-atpase subunit n=5 Tax=Bacillariophyta Ta... [more]
A0A6T7QKL8_9STRA7.440e-8975.14Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7R9W489_9STRA1.450e-8872.97Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A6U1PSC4_9STRA5.870e-8874.18Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1FY18_9STRA8.620e-8873.74Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S3LBA5_9STRA1.270e-8770.97Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1U6D2_9STRA1.370e-8671.43Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S2PCT9_9STRA2.220e-8672.68Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1294contigP-littoralis_Contig1294:11823..14212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FPL3
Preferred nameATP6V0B
PFAMsATP-synt_C
Model size760
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC03462
KEGG koko:K03661,ko:K15376
KEGG TC3.A.2.2
KEGG ReactionR09726,R09735
KEGG Pathwayko00190,ko00790,ko01100,ko04142,ko04145,ko04721,ko04727,ko05110,ko05120,ko05152,ko05323,map00190,map00790,map01100,map04142,map04145,map04721,map04727,map05110,map05120,map05152,map05323
KEGG ModuleM00160
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000220,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0001763,GO:0002009,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005886,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007424,GO:0007430,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009653,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009888,GO:0009894,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010506,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030139,GO:0030641,GO:0030659,GO:0030666,GO:0030670,GO:0031090,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033177,GO:0033179,GO:0033181,GO:0033572,GO:0034220,GO:0035239,GO:0035295,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045335,GO:0045851,GO:0046961,GO:0048729,GO:0048731,GO:0048754,GO:0048856,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051452,GO:0051453,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0060429,GO:0060446,GO:0060541,GO:0060562,GO:0061138,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Exons2
Evalue4.23e-121
EggNOG OGsCOG0636@1|root,KOG0233@2759|Eukaryota
Ec32 ortholog descriptionV-ATPase proteolipid subunit C-like domain
Ec32 orthologEc-12_001030.1
EC2.10.1.1,2.7.7.75
DescriptionATP hydrolysis coupled proton transport
Cds size564
COG categoryU
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789578.5808954-UTR-P-littoralis_Contig1294:11822..118981680789578.5808954-UTR-P-littoralis_Contig1294:11822..11898Pylaiella littoralis U1_48UTRP-littoralis_Contig1294 11823..11898 -
1680789578.6205657-UTR-P-littoralis_Contig1294:14092..142121680789578.6205657-UTR-P-littoralis_Contig1294:14092..14212Pylaiella littoralis U1_48UTRP-littoralis_Contig1294 14093..14212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789578.6021686-CDS-P-littoralis_Contig1294:11898..121711680789578.6021686-CDS-P-littoralis_Contig1294:11898..12171Pylaiella littoralis U1_48CDSP-littoralis_Contig1294 11899..12171 -
1680789578.6115766-CDS-P-littoralis_Contig1294:13801..140921680789578.6115766-CDS-P-littoralis_Contig1294:13801..14092Pylaiella littoralis U1_48CDSP-littoralis_Contig1294 13802..14092 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1294.7.1prot_P-littoralis_Contig1294.7.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1294 11899..14092 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1294.7.1

>prot_P-littoralis_Contig1294.7.1 ID=prot_P-littoralis_Contig1294.7.1|Name=mRNA_P-littoralis_Contig1294.7.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=188bp
MTTSQEVFCTNDYCNAGWPEVLTHMSPYGWANLGIAFALGLSVLGAGWGI
FLTGSSIMGAAIKAPRIRSKNLVSVIFCEATAIYGVIMAIILTNKISDPP
EDLETYEWTTAYFAGYALFCGGLGVGLTNLASGISVGVAGSACALGDAQD
ASLFVKILIVEIFASALGIFGIIVGIIQSNSAEFPQV*
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mRNA from alignment at P-littoralis_Contig1294:11823..14212-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1294.7.1 ID=mRNA_P-littoralis_Contig1294.7.1|Name=mRNA_P-littoralis_Contig1294.7.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2390bp|location=Sequence derived from alignment at P-littoralis_Contig1294:11823..14212- (Pylaiella littoralis U1_48)
TTTTTTCATAGGTGTGGTGCCTCCTATTCCTACGCTGCTCCCTTATTAGC
TGCAAATAAAGGTGTTCTGACAGCAAACAGCAGCAGCAGCAGCAGCAGTG
AACTGCTGTTCAGCAGCAAGATGACCACATCACAAGAGGTGTTCTGCACG
AACGACTACTGCAATGCGGGATGGCCGGAGGTTCTCACGCATATGTCACC
CTATGGCTGGGCGAACCTGGGTATCGCGTTCGCCCTTGGCCTCTCCGTAC
TGGGCGCCGGTTGGGGCATCTTCCTCACGGGGTCCAGCATCATGGGAGCT
GCCATCAAGGCTCCCCGAATTCGGTCCAAGAACTTGGTGAGCGTGATTTT
CTGCGAAGCGACGGCGATCTACGGAGTGATCATGGCGATCATCCTCACGA
ACAAAATCTCGGTGAGTAACGTATGCTATCATGTGCAGTGCACTAAACCC
ACGGAACGACCGCAGGGCCAGCCAACCTTTACGTACAAAGCACTTCGTTC
AATACAATAACAGCGCACGTTTTTCCTTCCGCGATGGGATCCAATACACA
CATAGTCTACACACATCCTCCAAAGGTGTACCAGGCAGACCGGTTCCCAG
AATGAGATGAATACACATACATCCAATGCTCTTACTACTGACGCCTGCCG
TGCTTGTGTCGGCGGTGGGCAGGCGCCGCGGTCATTCTGTGTATAAAAAT
TGTGTGCTCGTTTGTGCGCATCTGCTAAAAGGGGGAATGGCTCCCGTAAG
AACTCGGGGTGTTGCAAGCCGCCTTGACTAACAATAACATACAACTCCGT
ATTTACAGCAGTAAAATGCTTCGAAATGATATAATACTTCGAAGTACTTC
GAAGTACGTACAGTACCGGCCCGCTAATAAGAAAGCTCCTTTGAAGAAAG
TCAGCCTGAGATTTTCAGAAAATTAAGGAAGTGCCCAGCCTGGGCGGCGA
GTGCTACACTCAATCCTTTACAATACATAAGAAAGTGTCATGCTCGAGTT
TCAACCCAACATAAGAAGTCAGCCTGAGCCAGATTTACTGGTTTCTTATT
AGCGGGCCGGTACTGTAGTACTAGCATTGGAGCAGCCCCCCCCCCCGATC
GCCAGCGAGTTCCGCTTCGCTGCTCTCTGGTTTCCACTGCACACAAACTC
TCGTTTAGACAGCAGTATTTGACTCTCTCTTGAGAATGCATGCGTCACTG
ATTACCCATACCAGGGACTACGTACTTCGTATGCTGCCGTGTGTTGTGTA
TCGTCCACCGACGCCGGTACTTCCTCGTCACATGCCTCCAAACACCTTTG
GAATTCCACGCCGTCGCCGTGTGGTGCAATACTGTATGGTAACGCTGTAT
CCTTTGGGTACTACCCTTACGCCACGTTGTATATCGTGGGAACCTCGTCT
GGAATAATTTTTGAAGCTAGATTTTTCCTCTGAGCAGAAAGCGCTCCAAT
ACTGTACCAATAAAAACCTCTCGGTATACTCTCGAGAGTCAACGAGATCT
GTCCAGCGCCAACCGATTGGGTTCTGTCACTATTGTTGGCTTAAGAGATG
ACAAGATTTTCAGGACAGCGGCCTTTGAACCGAGGACGTGCCTGGCACCA
GGTATTTTTTTTCGGCAGCGGTCTCTCTGACCCATTCTGTCGTTTTGCTG
CCTCGTGCACAAGAGGGCTGTTGTTGTCTCTCACCAGTAGCTGTTTGGGC
TGCTCTTTTGTACCGTGCATCTCACGGCCCCAGCAGTCCCTGCGTGCACG
TTCCACCTCAGGCGTGCGCGTATGATGTGCGCCTTGTGGGTTTTGCAAGT
GCCCGATTCGTTCGTAGTATGCTAGCTTTTCAATGTCGCATCGATGTAGA
CCGTCAAACACGTCTCTTCCAGTTTACACCACCGACACGCCGCCGCCTGG
TCAAGGTACAAGCTCGAGACGAAACGTTGCTTGCAAAGCTGGCGCCCACA
CACCACAGAAAGCAGGCTCTGAAAACCTTCGCGCACCCTCCTCGCTCATT
TTTGGATTATGTTTTGGAAAAATCACTTTCAACGAACACAGGACCCGCCG
GAGGACTTGGAGACGTATGAGTGGACGACTGCGTATTTCGCCGGTTACGC
CTTGTTTTGCGGAGGTCTCGGGGTGGGGTTGACGAACCTAGCCAGCGGTA
TTTCCGTCGGGGTGGCCGGCAGCGCCTGCGCACTCGGGGACGCCCAGGAC
GCGTCCCTGTTCGTCAAGATCCTGATCGTTGAGATTTTTGCGTCCGCCCT
AGGAATCTTCGGAATCATCGTAGGTATCATTCAGTCCAACTCTGCGGAGT
TCCCCCAAGTGTAGGGAGCCTAGCGCGGTAAGGTTGAGGGGCGCAGGAAA
TTGCTTCTCTTGATGCAGTCATCAAATTTCTTGATTCGAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1294:11823..14212-

>mRNA_P-littoralis_Contig1294.7.1 ID=mRNA_P-littoralis_Contig1294.7.1|Name=mRNA_P-littoralis_Contig1294.7.1|organism=Pylaiella littoralis U1_48|type=CDS|length=564bp|location=Sequence derived from alignment at P-littoralis_Contig1294:11823..14212- (Pylaiella littoralis U1_48)
ATGACCACATCACAAGAGGTGTTCTGCACGAACGACTACTGCAATGCGGG
ATGGCCGGAGGTTCTCACGCATATGTCACCCTATGGCTGGGCGAACCTGG
GTATCGCGTTCGCCCTTGGCCTCTCCGTACTGGGCGCCGGTTGGGGCATC
TTCCTCACGGGGTCCAGCATCATGGGAGCTGCCATCAAGGCTCCCCGAAT
TCGGTCCAAGAACTTGGTGAGCGTGATTTTCTGCGAAGCGACGGCGATCT
ACGGAGTGATCATGGCGATCATCCTCACGAACAAAATCTCGGACCCGCCG
GAGGACTTGGAGACGTATGAGTGGACGACTGCGTATTTCGCCGGTTACGC
CTTGTTTTGCGGAGGTCTCGGGGTGGGGTTGACGAACCTAGCCAGCGGTA
TTTCCGTCGGGGTGGCCGGCAGCGCCTGCGCACTCGGGGACGCCCAGGAC
GCGTCCCTGTTCGTCAAGATCCTGATCGTTGAGATTTTTGCGTCCGCCCT
AGGAATCTTCGGAATCATCGTAGGTATCATTCAGTCCAACTCTGCGGAGT
TCCCCCAAGTGTAG
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