mRNA_P-littoralis_Contig1293.18.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1293.18.1
Unique NamemRNA_P-littoralis_Contig1293.18.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1293.18.1 vs. uniprot
Match: A0A6H5L1T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1T2_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 3.300e-11
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 2 
Query:    5 SLDEERKFMADLEAGLDHGMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVK 163
            SL  ERKF+A L+ G+ H +   Q   A +W H K+MSSSEEGQQVDRA ++K
Sbjct:   29 SLSTERKFVATLDEGVKHALQGKQYDAAGMWLHGKLMSSSEEGQQVDRALLIK 81
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BLAST of mRNA_P-littoralis_Contig1293.18.1 vs. uniprot
Match: A0A6H5JHN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHN8_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 5.740e-7
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:    2 SSLDEERKFMADLEAGLDHGMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVK 163
            +SL EE+ F+ +L  GL+  + + Q+   AVW HDK+MS++EEGQ+ DR + VK
Sbjct:   99 TSLVEEKVFVHNLVVGLETAVRSNQIDSGAVWVHDKLMSTTEEGQKTDRDQKVK 152
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BLAST of mRNA_P-littoralis_Contig1293.18.1 vs. uniprot
Match: A0A6H5K7C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7C0_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 7.050e-7
Identity = 25/54 (46.30%), Postives = 38/54 (70.37%), Query Frame = 2 
Query:    2 SSLDEERKFMADLEAGLDHGMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVK 163
            +SL EE+ F+ +   GL+  + + Q+   AVW HDK+MS++EEGQ+ DR +IVK
Sbjct:  152 TSLVEEKVFVHNRVVGLETAVRSNQIDSGAVWVHDKLMSTTEEGQKTDRDQIVK 205
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1293.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1T2_9PHAE3.300e-1154.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHN8_9PHAE5.740e-746.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7C0_9PHAE7.050e-746.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1293contigP-littoralis_Contig1293:37495..37657 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FPB8
PFAMsCAP_GLY,CRAL_TRIO
Model size165
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.000523
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Descriptionmacromolecule localization
Cds size135
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789578.2322862-UTR-P-littoralis_Contig1293:37494..375221680789578.2322862-UTR-P-littoralis_Contig1293:37494..37522Pylaiella littoralis U1_48UTRP-littoralis_Contig1293 37495..37522 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789578.2425022-CDS-P-littoralis_Contig1293:37522..376571680789578.2425022-CDS-P-littoralis_Contig1293:37522..37657Pylaiella littoralis U1_48CDSP-littoralis_Contig1293 37523..37657 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1293.18.1prot_P-littoralis_Contig1293.18.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1293 37523..37657 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1293.18.1

>prot_P-littoralis_Contig1293.18.1 ID=prot_P-littoralis_Contig1293.18.1|Name=mRNA_P-littoralis_Contig1293.18.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=45bp
MADLEAGLDHGMMTGQLGIAAVWFHDKMMSSSEEGQQVDRARIVK
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mRNA from alignment at P-littoralis_Contig1293:37495..37657+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1293.18.1 ID=mRNA_P-littoralis_Contig1293.18.1|Name=mRNA_P-littoralis_Contig1293.18.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=163bp|location=Sequence derived from alignment at P-littoralis_Contig1293:37495..37657+ (Pylaiella littoralis U1_48)
CTCTTCGCTGGACGAGGAGCGCAAGTTCATGGCGGACTTGGAAGCAGGGT
TAGACCATGGTATGATGACCGGCCAGTTAGGCATCGCCGCCGTCTGGTTT
CACGATAAAATGATGAGTTCCTCGGAGGAAGGGCAACAAGTAGACCGTGC
TAGAATCGTGAAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1293:37495..37657+

>mRNA_P-littoralis_Contig1293.18.1 ID=mRNA_P-littoralis_Contig1293.18.1|Name=mRNA_P-littoralis_Contig1293.18.1|organism=Pylaiella littoralis U1_48|type=CDS|length=135bp|location=Sequence derived from alignment at P-littoralis_Contig1293:37495..37657+ (Pylaiella littoralis U1_48)
ATGGCGGACTTGGAAGCAGGGTTAGACCATGGTATGATGACCGGCCAGTT
AGGCATCGCCGCCGTCTGGTTTCACGATAAAATGATGAGTTCCTCGGAGG
AAGGGCAACAAGTAGACCGTGCTAGAATCGTGAAA
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