mRNA_P-littoralis_Contig1291.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1291.5.1
Unique NamemRNA_P-littoralis_Contig1291.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1291.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1291contigP-littoralis_Contig1291:23391..24776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size240
Hectar predicted targeting categorysignal anchor
Exons2
Cds size240
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.6753604-CDS-P-littoralis_Contig1291:23390..234791680789577.6753604-CDS-P-littoralis_Contig1291:23390..23479Pylaiella littoralis U1_48CDSP-littoralis_Contig1291 23391..23479 -
1680789577.6841798-CDS-P-littoralis_Contig1291:24625..247761680789577.6841798-CDS-P-littoralis_Contig1291:24625..24776Pylaiella littoralis U1_48CDSP-littoralis_Contig1291 24626..24776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1291.5.1prot_P-littoralis_Contig1291.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1291 23391..24776 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1291.5.1

>prot_P-littoralis_Contig1291.5.1 ID=prot_P-littoralis_Contig1291.5.1|Name=mRNA_P-littoralis_Contig1291.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=80bp
PPTSGTSGLLFSFRSPASSLFGGLFVVFVYECTPSVFVPSLYLLLFYLIF
SLIFCLSSVDHVVTGPSPWFAFALVCHGPG
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mRNA from alignment at P-littoralis_Contig1291:23391..24776-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1291.5.1 ID=mRNA_P-littoralis_Contig1291.5.1|Name=mRNA_P-littoralis_Contig1291.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1386bp|location=Sequence derived from alignment at P-littoralis_Contig1291:23391..24776- (Pylaiella littoralis U1_48)
CCCCCGACTTCCGGTACTTCCGGTCTTCTTTTCTCTTTTCGTTCCCCTGC
TTCCTCTTTGTTTGGCGGCCTGTTTGTTGTGTTTGTCTACGAGTGCACTC
CCTCAGTCTTTGTGCCCTCCCTGTATCTTCTTCTTTTTTATCTTATTTTT
TGTAGAGCTGTGCATCGGGAGGAAAAAACGATATAATTTACATCGGTATT
CGGCGAAGCCGATATAACGATGTTTTCCTCGATGTGTCGGCGAAGCCGAT
ACATCGGGGAAAACATCGGCGAGCGCAGCGAGCCCCGCGAGCACAGGCGA
GCCGACGCGCGAAGGCGCTGGAGGCTCGCCTGTGCGAGCCCCCCCCCCCC
CCGGCTGGTGAGGGGACCCCGCTGGAGGCGCCGCCGGAGGCAGAAAATTT
AGCGAATTTTCCTTTCATTTCCCTTCAGAACAGACGAAAATACCGCGGAA
AAAATGCTTGGTTTCCAGCTTCAAAAAAGGTAGCTAAAAAAAGGCGTCAT
GTTCGAGAAGACAGTATAAAAAGCAAAAACAATAGCTAAACAACAACGAA
GAAAAGTCTTGACTTTATGTCGTTCAAAATAATGGACAAGAGTACGTATG
CCAGAGCAGACTGCCTCGTGGTACCTGCCCTATCTTCTGGCTATCTTCTC
TCTACTCATCTGGCTACTAAGAGTCTCCAGGCGGCCAGAAACCATTCCAC
TACATTCCACCGTGTTGACTTTTTCTCCGCAGAGCATTGGCGACGAAAAA
TTAAATCTTACAAATCGAGTCCACAACTCAGTAGGTCGTAGTCCGAATGG
CTACGGGTGAAAGCTATGCGACGGCCATACGGACGAAAGGACGCACCCAA
TCTGAATACGTGAAAAGCGAAACACGAAACGAAACAGGAAACAAGAAGAT
CCTGTAGTGCTTCCACACCGCGTACGTCGCGTTCGAAGGCTTGCCCAGCG
TGGGCCACGTCTTTAGTCTATCAACGTTCTCTGCTACTTATTTTGCTCCT
GCTGCCTCCTCCACCACCAATGGTTCAGCTGCAGCCGGTGTCGTGGCGGA
CCCTCCACCCTGGTCCGCGGCTGGTTGGTCACTCATGACGTGCAATGTTG
TAGGCTTTCGGGTCCGCTGTGCTGTTCTCTGTTCTCTCCTGAGTGTGTGG
GGGCTCCGTATTACTCCACATACCCATATTTTCGATTCACGGAGCCCCTA
TCATATATCGGCCCTCGTATCGGTGCGATTTTTCGATGTAGATGTCGATA
TATATCGTCCGATTTATATCGTGATATCGTTCCCGATGCACAGCTAGCTC
TAATTTTTTGTCTTTCGTCTGTTGATCATGTAGTTACTGGACCATCGCCC
TGGTTTGCGTTTGCCTTGGTCTGTCATGGCCCTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1291:23391..24776-

>mRNA_P-littoralis_Contig1291.5.1 ID=mRNA_P-littoralis_Contig1291.5.1|Name=mRNA_P-littoralis_Contig1291.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=240bp|location=Sequence derived from alignment at P-littoralis_Contig1291:23391..24776- (Pylaiella littoralis U1_48)
CCCCCGACTTCCGGTACTTCCGGTCTTCTTTTCTCTTTTCGTTCCCCTGC
TTCCTCTTTGTTTGGCGGCCTGTTTGTTGTGTTTGTCTACGAGTGCACTC
CCTCAGTCTTTGTGCCCTCCCTGTATCTTCTTCTTTTTTATCTTATTTTT
TCTCTAATTTTTTGTCTTTCGTCTGTTGATCATGTAGTTACTGGACCATC
GCCCTGGTTTGCGTTTGCCTTGGTCTGTCATGGCCCTGGG
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