mRNA_P-littoralis_Contig1290.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1290.1.1
Unique NamemRNA_P-littoralis_Contig1290.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1290.1.1 vs. uniprot
Match: D7G5U8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5U8_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 9.730e-24
Identity = 60/139 (43.17%), Postives = 88/139 (63.31%), Query Frame = 3 
Query: 1053 EMSPLVTTALTVLRNESNTEDWFTFSQHLNALVRKSFTLGLLNDRELLDQLQFRGDDMVEQGGHPAAVLRVFSEMLPNKRHVSRETTFRDRGKLRDINKLHS----ASTAVSGAAHGYPGPSHLAAHHAARVAASSTAP 1457
            +M+PL TTALT LR E   EDW++F  H++A++ K  TLGL+  R +LD   +RG+DM+ Q G P  V  +F++++PN R++SRETT RDR +L+ I+ +      A+T  +    GY G    AA  A+ +AA  TAP
Sbjct:  180 QMNPLPTTALTPLRTEKGKEDWYSFKPHVDAIIAKGVTLGLMTWRSMLDDFVYRGNDMLLQFGVPEKVFGIFTDLMPNARNISRETTLRDRSRLKAIDTISGGWKLAATLATAHLSGYAGAYQQAASQASTIAAGITAP 318
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1290.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5U8_ECTSI9.730e-2443.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1290contigP-littoralis_Contig1290:1019..5541 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3R3
PFAMsLRR_1,LRR_8
Model size1493
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.15e-09
EggNOG OGsCOG4886@1|root,KOG0619@2759|Eukaryota
Descriptionregulation of response to stimulus
Cds size1302
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.5417264-UTR-P-littoralis_Contig1290:1018..12091680789577.5417264-UTR-P-littoralis_Contig1290:1018..1209Pylaiella littoralis U1_48UTRP-littoralis_Contig1290 1019..1209 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.5514283-CDS-P-littoralis_Contig1290:1209..20731680789577.5514283-CDS-P-littoralis_Contig1290:1209..2073Pylaiella littoralis U1_48CDSP-littoralis_Contig1290 1210..2073 +
1680789577.560072-CDS-P-littoralis_Contig1290:5103..55411680789577.560072-CDS-P-littoralis_Contig1290:5103..5541Pylaiella littoralis U1_48CDSP-littoralis_Contig1290 5104..5541 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1290.1.1prot_P-littoralis_Contig1290.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1290 1210..5541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1290.1.1

>prot_P-littoralis_Contig1290.1.1 ID=prot_P-littoralis_Contig1290.1.1|Name=mRNA_P-littoralis_Contig1290.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=434bp
MSGRVTRSHAPTPAAAAAPPAQPRAAGTRSRGAGRRDSNSGRARASSVPA
AAPTAHASSAATPTLPIRPDWQTATVVDSSSSLEELPCMGTLGLEGTERK
VDPARVFFSDGLAFRDTTAADSTIRCYHLVTQVQPLGGGLPSFYQASAQA
SDIDRGVSGVGTAQFRTRLARSVVAECVVQLALSAGLLKASGGCVFLPTE
AEIQTRAGRHQRSAASAAPPTPLPAPAAPAAPAGAPAGASTEAGVDPLVA
RLQTLLAPPATEAAGAAALAPEDQRVVNYFSLQHENFEMSPLVTTALTVL
RNESNTEDWFTFSQHLNALVRKSFTLGLLNDRELLDQLQFRGDDMVEQGG
HPAAVLRVFSEMLPNKRHVSRETTFRDRGKLRDINKLHSASTAVSGAAHG
YPGPSHLAAHHAARVAASSTAPQPRSRGSSVRGG
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mRNA from alignment at P-littoralis_Contig1290:1019..5541+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1290.1.1 ID=mRNA_P-littoralis_Contig1290.1.1|Name=mRNA_P-littoralis_Contig1290.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4523bp|location=Sequence derived from alignment at P-littoralis_Contig1290:1019..5541+ (Pylaiella littoralis U1_48)
TAGATAGACACGTGGCCAGGCACTGGACGCGTACCATCTCCGGGCCCCCT
CCATATCTGTCTGCATGAGTGTCCCACATGTAGTCACTGTTCGTTGGGGC
TACTCCCTGCTCGTTGGGTCTACAGAAGCAAGCGTTTGTCTCCAAAACAG
TAAGTAAAGACTCTTGGACTACTTCCCCAACGAGATCAAGCATGTCCGGG
CGCGTGACTCGCTCGCACGCACCGACACCAGCGGCGGCGGCAGCACCGCC
GGCGCAGCCACGTGCGGCAGGCACGCGCAGCAGAGGGGCAGGGCGGAGAG
ACTCAAATTCCGGGCGAGCCCGCGCCTCATCGGTGCCTGCAGCCGCGCCT
ACAGCCCATGCATCGTCCGCGGCCACGCCCACCCTCCCCATCAGGCCGGA
TTGGCAGACGGCGACGGTGGTCGACTCCTCCTCCTCCTTAGAGGAACTCC
CGTGCATGGGTACCCTCGGTCTGGAGGGTACAGAAAGAAAAGTGGACCCA
GCTCGGGTGTTCTTTTCTGACGGACTGGCCTTTAGGGACACGACTGCGGC
CGACAGCACCATCCGCTGCTACCACTTGGTGACCCAAGTGCAGCCTCTGG
GCGGCGGCCTGCCCTCCTTTTACCAGGCGTCAGCCCAGGCGTCGGATATC
GACCGTGGGGTGAGCGGCGTAGGGACGGCCCAGTTTAGGACCCGGCTGGC
GAGGTCCGTCGTCGCCGAATGTGTCGTTCAATTAGCCCTTTCCGCCGGAC
TGCTGAAGGCGTCGGGCGGGTGCGTCTTCCTCCCGACCGAGGCGGAAATC
CAAACACGGGCTGGGAGGCACCAGCGGAGCGCCGCGTCCGCCGCGCCTCC
AACGCCCCTGCCGGCTCCAGCCGCGCCTGCCGCGCCTGCTGGAGCGCCTG
CTGGAGCGTCTACGGAAGCCGGCGTGGACCCGCTGGTCGCGCGCCTTCAG
ACCCTGTTGGCACCGCCAGCGACAGAAGCGGCTGGCGCGGCCGCGTTGGC
TCCGGAAGACCAGCGGGTGGTGAATTATTTTTCCCTTCAACATGAAAATT
TCGAGGTGGGTTGGTGTTTTTCCTCCCTGATTCTGAATGGTGTTGTTTGC
GAGATTGTTTACTGCTGTCTTCTTCTTTGTTTCAGGATTGATTGTTTCCT
TGCTCTCACGATTGATTACTGCTGGCAAAAACAAAATCCTCTTGCGCTTT
CTCTTTATTCATGCGTTCAGGGAAAGTTCAACATGGCCCTTTCTGCGATT
TGCGATCTACAGATGCTTTCGGTCTCTTGCTTGTTTCAGGATTGATTGCT
GCCTTGTTCTCACGATTGATTACTGCTGGCAAAAATCCTCTTGCGCGCTT
GCTTCTTTCAGGATTGATTGCTGCCGGGTTCTCACGATTGATTACTGCTG
GCAAAAATCCTCTTGCGCTTTCGCTTTATTAATGCGTTCAGCGGAAAAAT
TCAACATGACCCTTTCTTTTGTTTCGCATACCTCTGTATGGATACCTACG
TATACAGCTGAACTGCCACAACTGCAGCTGCCCGGTATATAGGTCTATAC
TCTATACTGCTGTATATAGCTGAACTATCTGTCTATATACTGCTGTAGAC
TATATATCTATCTGCGGTGTATACCTGAACTATCTATACTGCTGTATATA
GCTGCTGTAATATAGCTGAACTGGAGGGATAGCTGCGCTGCTGCATCGTG
TCATATACTTCGGTATCATCTACTTATAAGATGCTGCGCTGCTGCATCGT
GTCATATACTTCGGTATCATCTACCTATAAGCTCTATACTGCTGTATGTA
GCTACTGTATATAGCTGAACTGCAGGTATAGCTGCACTGCCGCGTCATCT
ACCTTTATACCTATACGGCTGTATATCGTTGAATTGATGAACTGCAGGTA
AGCGGCAGTGCTGGGTCATCTACCTATATATCTACTCCGTATACTGCTCT
CCGTATACTGCCGTGTATAGCTGAAATGCAGGTTCAGCTGCAGCTAGTTT
AGACAGCTGCATGCGGTGCCATCTATACATATACCCACGGCGGCAGGCCT
ATGCGGCGATATATATCTGCACTGCAAGGTCTATTCTGTTGTATTTTCTT
CTGTATATAGCTGAACTGCAGGTTTGGCTGCACTACAGATCGGTTGTATA
ACACTGAACATCTGTTGTATAACGCTGAACTGCAGGTTTAGCCCTGCAGA
TCTGTTGTATGTAGCTGCACCGCAAGCTTAGACAGCGGCAGGCCGGGTCA
CTTACGGATATACCCACGGCGACAAGCCTATGCTGCTATATGATGCTGTT
ATATATAGCTGCACGGAAAGGTCAAACTGCGGTATAGTCTATAGCTGTTC
TGCGGTATATAATAATAATGCGGTTCCACGGCTGTGGCATCCACCTATGT
ATATACGGAGTATATATCTAGGATATATATCTAGGTCCTCTACATATATA
CACGGCCGCAAGCCTATGCTGCTATTTATAGTTCACTGCAGGTCTCTATT
GCTTTACATAGCTGTACTGCCGTATATAATGGGTATGTTTTTACCCACTT
GCCGCAGTTTTTCGTATGGGATGCCTTTCCCTTATTACCCACTGGCCGCA
GTCATCGTATGCAATACGTTTCTCTTTTGCCGCAGCCACTGTATGAGATG
TCCTTTCCCGCGTTAGCCGCCGCTACCCCACCTTAGCCGCAGCTATCGAA
AATTCATTTCGCCGCAGCCACCATCCTACGAGTTGTGTCTTCCACTTTAG
CCGCCGCGGCAGTATCGTATTGTCATTTCGCCGCAGCCACCAAATGAGGT
GTAATTgcCCCCCCCCTTGCAGCAGCCATCGTCTAATGGTTTGCTACCAG
ATTGTGTTTCGCCATTTGCCGCAGCCATCATCTGAGATGTGTTTCCTGGC
GTTTCTTCTCGCCGCAACCATCATGTGAGGTGTGCTTCCTTGCTTTTCGC
CGCAGCCATCATATGAGATGTGTTTTCCATTTGAGCCGCAGTCATCGTAT
GAGATGACTTTCCGCCATTTTCGCCGCAGCCATCGTATTGATGTGTTTTA
TCGTTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATGTGCTTTCGC
CGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTAT
GAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTAC
ATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGC
CATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGATG
TGCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTC
GCCGCAGCCATCGTATGAGATGTGCTTTAACATTTTTCGCCGCAGCCATC
GTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGCT
TTACGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCG
TATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAGATGTGCTT
TACATTTTCGCCGCAGCCATCGTATGAGATGTGCTTTACATTTTCGCCGC
AGCCGTCGTATGAGATGTGCTTTACATTTTCGCCGCAGCCATCGTATGAG
ATGTGCTTTACATTTTCGCCGCAGCCGTCATATGAGAGGTTTTCTTTTCG
CCGCAGCCATCATATGAGATGTGCTTTTCTGCTTTCGCCGCAGCCATCCT
ATAAGGTGTATCATCGTTTCACGGCCGCATGATTTCGCCGTCTGCTATCA
GTTTCTCTCGCTGCAGCCATCATCTGCGATGTGCTCTCCCACCGCCATTC
GTTGATACGTGTTTCCTTGGGCCGCAGCTATCGAGGGGTCAGCATTCCAC
GGTCGCAGGATTTCGCCGTCTGTTGTCAATACCAATTTGGACCACTTCCC
TCTCTCGCTGGTGGCCGCAGCCATGGAGGGGCCCGCGTTCCACCGTCGCA
TGATTTCGCCGTCTGTTGTCAATACCAATTTGGACCATTTCCTCTCTCGC
TGGTTGCCGGTGTTTGTTTCCGCCGCGCGCTGCAGATGAGTCCGCTCGTC
ACCACGGCGCTCACCGTCCTTCGGAACGAGTCCAACACAGAAGATTGGTT
TACTTTCTCCCAACACCTGAACGCCCTCGTCAGGAAATCTTTTACACTTG
GCCTCCTCAACGATCGTGAACTCCTGGACCAACTCCAGTTTCGTGGAGAC
GACATGGTTGAACAAGGAGGACACCCAGCCGCCGTTTTGCGCGTCTTCTC
CGAGATGCTTCCGAACAAACGTCATGTCTCGCGGGAGACCACCTTTCGGG
ACCGCGGAAAACTCCGCGACATCAACAAGCTCCACAGCGCGTCAACCGCA
GTGTCCGGAGCAGCGCACGGATATCCTGGCCCGTCCCATTTAGCCGCTCA
CCACGCTGCACGTGTGGCGGCGTCGTCCACCGCTCCACAGCCGCGGAGTA
GGGGTTCGAGCGTTCGCGGTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1290:1019..5541+

>mRNA_P-littoralis_Contig1290.1.1 ID=mRNA_P-littoralis_Contig1290.1.1|Name=mRNA_P-littoralis_Contig1290.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1302bp|location=Sequence derived from alignment at P-littoralis_Contig1290:1019..5541+ (Pylaiella littoralis U1_48)
ATGTCCGGGCGCGTGACTCGCTCGCACGCACCGACACCAGCGGCGGCGGC
AGCACCGCCGGCGCAGCCACGTGCGGCAGGCACGCGCAGCAGAGGGGCAG
GGCGGAGAGACTCAAATTCCGGGCGAGCCCGCGCCTCATCGGTGCCTGCA
GCCGCGCCTACAGCCCATGCATCGTCCGCGGCCACGCCCACCCTCCCCAT
CAGGCCGGATTGGCAGACGGCGACGGTGGTCGACTCCTCCTCCTCCTTAG
AGGAACTCCCGTGCATGGGTACCCTCGGTCTGGAGGGTACAGAAAGAAAA
GTGGACCCAGCTCGGGTGTTCTTTTCTGACGGACTGGCCTTTAGGGACAC
GACTGCGGCCGACAGCACCATCCGCTGCTACCACTTGGTGACCCAAGTGC
AGCCTCTGGGCGGCGGCCTGCCCTCCTTTTACCAGGCGTCAGCCCAGGCG
TCGGATATCGACCGTGGGGTGAGCGGCGTAGGGACGGCCCAGTTTAGGAC
CCGGCTGGCGAGGTCCGTCGTCGCCGAATGTGTCGTTCAATTAGCCCTTT
CCGCCGGACTGCTGAAGGCGTCGGGCGGGTGCGTCTTCCTCCCGACCGAG
GCGGAAATCCAAACACGGGCTGGGAGGCACCAGCGGAGCGCCGCGTCCGC
CGCGCCTCCAACGCCCCTGCCGGCTCCAGCCGCGCCTGCCGCGCCTGCTG
GAGCGCCTGCTGGAGCGTCTACGGAAGCCGGCGTGGACCCGCTGGTCGCG
CGCCTTCAGACCCTGTTGGCACCGCCAGCGACAGAAGCGGCTGGCGCGGC
CGCGTTGGCTCCGGAAGACCAGCGGGTGGTGAATTATTTTTCCCTTCAAC
ATGAAAATTTCGAGATGAGTCCGCTCGTCACCACGGCGCTCACCGTCCTT
CGGAACGAGTCCAACACAGAAGATTGGTTTACTTTCTCCCAACACCTGAA
CGCCCTCGTCAGGAAATCTTTTACACTTGGCCTCCTCAACGATCGTGAAC
TCCTGGACCAACTCCAGTTTCGTGGAGACGACATGGTTGAACAAGGAGGA
CACCCAGCCGCCGTTTTGCGCGTCTTCTCCGAGATGCTTCCGAACAAACG
TCATGTCTCGCGGGAGACCACCTTTCGGGACCGCGGAAAACTCCGCGACA
TCAACAAGCTCCACAGCGCGTCAACCGCAGTGTCCGGAGCAGCGCACGGA
TATCCTGGCCCGTCCCATTTAGCCGCTCACCACGCTGCACGTGTGGCGGC
GTCGTCCACCGCTCCACAGCCGCGGAGTAGGGGTTCGAGCGTTCGCGGTG
GG
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