mRNA_P-littoralis_Contig129.122.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig129.122.1
Unique NamemRNA_P-littoralis_Contig129.122.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig129.122.1 vs. uniprot
Match: D7FNW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW1_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 6.770e-42
Identity = 85/105 (80.95%), Postives = 93/105 (88.57%), Query Frame = 3 
Query:    3 EIEIDMLQVRAVQRRLGMLACTSDLSVDFKEELRGVRSALEQQRSCNSAVDGVVSQEADGELSARYSEQTQLLERALRSMDARAQSLHACAERACSFFEAVASEL 317
            EIEIDMLQVRAVQRRLGMLAC SDLS +FKE LR  R+ALEQ+RSCN AVD VVSQEADGEL+AR SEQ+ L+ERALRSMDARAQSLHACAER CSFF A+A E+
Sbjct:  662 EIEIDMLQVRAVQRRLGMLACASDLSEEFKEVLRSTRAALEQKRSCNKAVDLVVSQEADGELTARLSEQSLLMERALRSMDARAQSLHACAERVCSFFAAMALEV 766
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BLAST of mRNA_P-littoralis_Contig129.122.1 vs. uniprot
Match: A0A6H5KM06_9PHAE (DUF4455 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM06_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 9.300e-34
Identity = 79/117 (67.52%), Postives = 88/117 (75.21%), Query Frame = 3 
Query:    3 EIEIDMLQVRAVQRRLGMLACTSDLSVDFKEELRGVRSALEQQRSCNSAVDGVVSQE------------ADGELSARYSEQTQLLERALRSMDARAQSLHACAERACSFFEAVASEL 317
            EIEIDMLQ     RRLGMLAC SDLS +FKE LR  R+ALEQ+RSCN AVD VVS+E            ADGEL+AR+SEQ+ L+ERALRSMDARAQSLH CAER CSFF AVA E+
Sbjct:  572 EIEIDMLQ-----RRLGMLACASDLSEEFKEVLRSTRAALEQKRSCNKAVDLVVSEESNHICNVTIEHQADGELAARFSEQSLLMERALRSMDARAQSLHTCAERVCSFFAAVALEV 683
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BLAST of mRNA_P-littoralis_Contig129.122.1 vs. uniprot
Match: A0A7S2G9I6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G9I6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 5.760e-9
Identity = 38/103 (36.89%), Postives = 59/103 (57.28%), Query Frame = 3 
Query:    9 EIDMLQVRAVQRRLGMLACTSDLSVDFKEELRGVRSALEQQRSCNSAVDGVVSQEADGELSARYSEQTQLLERALRSMDARAQSLHACAERACSFFEAVASEL 317
            E++ML+VR+VQ+RL ML   S+L   F+E L  +   L Q+  CNS VD VV+ E    L AR +EQ ++ +  +R ++     +H  + R  +F+  VA  L
Sbjct:   28 EVNMLEVRSVQKRLMMLMQVSELDKTFQETLSELLVMLRQKEVCNSIVDQVVADECTAPLDARKAEQVEVADNVIRFLERNTSHVHEVSVRLGTFYLCVAKIL 130
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BLAST of mRNA_P-littoralis_Contig129.122.1 vs. uniprot
Match: F0YNN6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNN6_AURAN)

HSP 1 Score: 60.5 bits (145), Expect = 2.040e-8
Identity = 34/103 (33.01%), Postives = 58/103 (56.31%), Query Frame = 3 
Query:    9 EIDMLQVRAVQRRLGMLACTSDLSVDFKEELRGVRSALEQQRSCNSAVDGVVSQEADGELSARYSEQTQLLERALRSMDARAQSLHACAERACSFFEAVASEL 317
            E++ML+VR++Q+R+ M     +L   F E+LR    AL ++R+CN  +D VVS E +  ++ R  EQ  L    +  ++ +A  ++  A R C F+  VA  +
Sbjct:  535 EVNMLEVRSIQKRVAMHVHACELDPSFLEDLRETLGALRKKRTCNEKIDEVVSAECEAIIALRVEEQKALAHHIVVYLEHQASDVYETACRVCDFYVKVAKAI 637
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig129.122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FNW1_ECTSI6.770e-4280.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM06_9PHAE9.300e-3467.52DUF4455 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2G9I6_9STRA5.760e-936.89Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
F0YNN6_AURAN2.040e-833.01Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig129contigP-littoralis_Contig129:505949..507170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNW1
Preferred nameCCDC180
PFAMsDUF4455,DUF4456,RBP_receptor
Model size319
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.95e-39
EggNOG OGs2CN0H@1|root,2QT47@2759|Eukaryota
DescriptionDomain of unknown function (DUF4455)
Cds size300
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.4780514-UTR-P-littoralis_Contig129:505948..5059651680789577.4780514-UTR-P-littoralis_Contig129:505948..505965Pylaiella littoralis U1_48UTRP-littoralis_Contig129 505949..505965 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.4876368-CDS-P-littoralis_Contig129:505965..5059741680789577.4876368-CDS-P-littoralis_Contig129:505965..505974Pylaiella littoralis U1_48CDSP-littoralis_Contig129 505966..505974 +
1680789577.4973643-CDS-P-littoralis_Contig129:506233..5063801680789577.4973643-CDS-P-littoralis_Contig129:506233..506380Pylaiella littoralis U1_48CDSP-littoralis_Contig129 506234..506380 +
1680789577.5091634-CDS-P-littoralis_Contig129:507026..5071701680789577.5091634-CDS-P-littoralis_Contig129:507026..507170Pylaiella littoralis U1_48CDSP-littoralis_Contig129 507027..507170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig129.122.1prot_P-littoralis_Contig129.122.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig129 505966..507170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig129.122.1

>prot_P-littoralis_Contig129.122.1 ID=prot_P-littoralis_Contig129.122.1|Name=mRNA_P-littoralis_Contig129.122.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=100bp
MLQVRAVQRRLGMLACTSDLSVDFKEELRGVRSALEQQRSCNSAVDGVVS
QEADGELSARYSEQTQLLERALRSMDARAQSLHACAERACSFFEAVASEL
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mRNA from alignment at P-littoralis_Contig129:505949..507170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig129.122.1 ID=mRNA_P-littoralis_Contig129.122.1|Name=mRNA_P-littoralis_Contig129.122.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1222bp|location=Sequence derived from alignment at P-littoralis_Contig129:505949..507170+ (Pylaiella littoralis U1_48)
CAGAAATCGAGATCGACATGCTTCAGGTGACCGATGTCACGGGGTTCGAG
GCGGCTTTACGTTTGTCGGTGTCTTGCGCCTGTACCCATTGACCAAGTGC
GACTTTACACTCCTGATATGTACGAATGCAATTTAGCATACTGTTCGACG
TGCTGTACATAAGCAGGTAGCAACAATTGCGTCACCGTGAAGAGCGTTGG
TGTGTGCCTTCATCGTCGTGATTTTGCGCTCTTCGAGTCTCGACTCTCTT
GCTGCATTAACGTCTGATATGATGGATGAATCTAGGTGCGCGCGGTGCAG
CGCCGACTTGGAATGCTAGCCTGCACGAGCGACCTGAGCGTGGATTTCAA
AGAGGAGCTACGGGGTGTTCGCAGCGCGCTGGAGCAGCAGCGGTCGTGCA
ACAGTGCCGTCGACGGTGTGGTGTCGCAAGAGGTAACAGAGGCACTTGAC
ACTCGAACGTCACGGTACATGCACCTCTCACCAATAATCCTCCCTTTTTG
GTGCACCTTCAGTTACAGACCCCAAACGTCGACAAACCGCTCGCGCACGC
TCACCCAGAGCAGAAAATCATGCGTCCGCCCTTACTTCGAGAGGCCGCTG
CGGGTGATTCCTGAGGCCGAGCCATGAATCAAGAGACGCCCACCGCCGAT
CGCCTGGTCGACCGCGACCCCGCCGTCCTCCACCCTACAGTAGCACAGGA
CCGACTGGAAGGCGCCGCCGAAGTCGCGTCAGACGGTAGCGGCGTGCAGG
ACAATGGCTTCACCCCTCCTCCATTCCGCTGCGTGTTCTTCAACCTGTCC
CTTTGACCCTCGCCAGCTCCCCAAAACATGTGCACCGCAGTTATGTTTTG
GTCTCGTTCTGGTAATGTTACCGCAAGTTACCCCTCCTGTAGATGTTTGT
TGGCTTCCTCCTCCCTTTCGATGGACAACAGTCCCCTGAAATCGCCGCCG
ACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAGA
AATAACCTCCAACAACAAGTAGAGCACCATCATCCAAAGCCCAACCAGCC
CACCACCATCCCGCCACCGTGTCTCTAGGCTGACGGCGAGCTGAGCGCAC
GGTACTCGGAGCAAACTCAGCTGCTAGAGCGCGCCCTGCGCTCCATGGAC
GCGAGGGCACAGAGCCTCCACGCCTGCGCCGAGCGCGCGTGCTCTTTCTT
CGAGGCCGTGGCTTCGGAGCTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig129:505949..507170+

>mRNA_P-littoralis_Contig129.122.1 ID=mRNA_P-littoralis_Contig129.122.1|Name=mRNA_P-littoralis_Contig129.122.1|organism=Pylaiella littoralis U1_48|type=CDS|length=300bp|location=Sequence derived from alignment at P-littoralis_Contig129:505949..507170+ (Pylaiella littoralis U1_48)
ATGCTTCAGGTGCGCGCGGTGCAGCGCCGACTTGGAATGCTAGCCTGCAC
GAGCGACCTGAGCGTGGATTTCAAAGAGGAGCTACGGGGTGTTCGCAGCG
CGCTGGAGCAGCAGCGGTCGTGCAACAGTGCCGTCGACGGTGTGGTGTCG
CAAGAGGCTGACGGCGAGCTGAGCGCACGGTACTCGGAGCAAACTCAGCT
GCTAGAGCGCGCCCTGCGCTCCATGGACGCGAGGGCACAGAGCCTCCACG
CCTGCGCCGAGCGCGCGTGCTCTTTCTTCGAGGCCGTGGCTTCGGAGCTC
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