mRNA_P-littoralis_Contig129.121.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig129.121.1
Unique NamemRNA_P-littoralis_Contig129.121.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig129.121.1 vs. uniprot
Match: D7FNW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW1_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 7.120e-41
Identity = 76/87 (87.36%), Postives = 82/87 (94.25%), Query Frame = 3 
Query:    3 WLSMAVEKTDLLLCGVDLEGVLDKQGKAGMRRGLADSVERLRKAPKSDIPVILDVMRRQAADLAQIPDIDPLLAACLDRATEDIDRV 263
            WLS+A+E+TDL+LCGVDLE VLDKQGKAGMRRGLADSVERLRKAPKSDIP ILD MRRQAADL+Q+ DIDPLLAACLD ATEDIDRV
Sbjct:  502 WLSVAIERTDLVLCGVDLERVLDKQGKAGMRRGLADSVERLRKAPKSDIPSILDAMRRQAADLSQVVDIDPLLAACLDHATEDIDRV 588
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BLAST of mRNA_P-littoralis_Contig129.121.1 vs. uniprot
Match: A0A6H5KM06_9PHAE (DUF4455 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM06_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 1.880e-39
Identity = 73/87 (83.91%), Postives = 81/87 (93.10%), Query Frame = 3 
Query:    3 WLSMAVEKTDLLLCGVDLEGVLDKQGKAGMRRGLADSVERLRKAPKSDIPVILDVMRRQAADLAQIPDIDPLLAACLDRATEDIDRV 263
            W+S+A+E+TDL+LCGVDLE VLDKQGKAGMRRGLADSVERLRKAPKS IP ILD MRRQAADL+Q+ DIDP+LAACLD ATEDIDRV
Sbjct:  432 WVSVAIERTDLVLCGVDLERVLDKQGKAGMRRGLADSVERLRKAPKSGIPSILDAMRRQAADLSQVVDIDPMLAACLDHATEDIDRV 518
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig129.121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNW1_ECTSI7.120e-4187.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM06_9PHAE1.880e-3983.91DUF4455 domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig129contigP-littoralis_Contig129:504298..505243 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNW1
Preferred nameCCDC180
PFAMsDUF4455,DUF4456,RBP_receptor
Model size265
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.76e-39
EggNOG OGs2CN0H@1|root,2QT47@2759|Eukaryota
DescriptionDomain of unknown function (DUF4455)
Cds size252
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.4067972-UTR-P-littoralis_Contig129:504297..5043081680789577.4067972-UTR-P-littoralis_Contig129:504297..504308Pylaiella littoralis U1_48UTRP-littoralis_Contig129 504298..504308 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.4172142-CDS-P-littoralis_Contig129:504308..5043581680789577.4172142-CDS-P-littoralis_Contig129:504308..504358Pylaiella littoralis U1_48CDSP-littoralis_Contig129 504309..504358 +
1680789577.428287-CDS-P-littoralis_Contig129:504794..5049301680789577.428287-CDS-P-littoralis_Contig129:504794..504930Pylaiella littoralis U1_48CDSP-littoralis_Contig129 504795..504930 +
1680789577.4401755-CDS-P-littoralis_Contig129:505177..5052431680789577.4401755-CDS-P-littoralis_Contig129:505177..505243Pylaiella littoralis U1_48CDSP-littoralis_Contig129 505178..505243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig129.121.1prot_P-littoralis_Contig129.121.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig129 504309..505243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig129.121.1

>prot_P-littoralis_Contig129.121.1 ID=prot_P-littoralis_Contig129.121.1|Name=mRNA_P-littoralis_Contig129.121.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=84bp
MAVEKTDLLLCGVDLEGVLDKQGKAGMRRGLADSVERLRKAPKSDIPVIL
DVMRRQAADLAQIPDIDPLLAACLDRATEDIDRV
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mRNA from alignment at P-littoralis_Contig129:504298..505243+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig129.121.1 ID=mRNA_P-littoralis_Contig129.121.1|Name=mRNA_P-littoralis_Contig129.121.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=946bp|location=Sequence derived from alignment at P-littoralis_Contig129:504298..505243+ (Pylaiella littoralis U1_48)
GCTGGTTATCGATGGCTGTAGAGAAGACCGACCTACTGCTGTGCGGAGTG
GATCTAGAGGGGTGAGAGGCTTCGCAAGTCAACATTTCTGACATGGTTGT
ACGTCTCTGCGGGCTCTGTTTAGTTTTTTTCCGTGGGCTTAACGATTTGT
GAAGGGCATCTCCATAAACGAAGAAGACAGATGAGAACGGTTTGCTACCG
CCAACTCGCCGTTTTCGCTCTCGCAGCACTGGGTAGGCCTCAATCGAAAA
TAAAGGCGTATTCCTTGAAAGATGATCGAATGTACGCTTCAACAGCGCAT
ACTCGAAGTACAGTACATTCGTTTGCCTGTTTGAAGCGGGGAAGGTCAGA
ACCATGCCCAGCGCCTATTCCACGCAGTACTGATTATGTTGTGCCATCTT
AGAACATCGTCCAAACGTCCTCACAAACATTTCTCCCATTGCTATCCCTC
TGTCAAAAGCCTCATCCCGGCGCCACTTTTTGCCAAATACTGAACAGGGT
TCTCGACAAGCAAGGCAAGGCGGGCATGCGCCGGGGCCTGGCCGACTCTG
TCGAGCGGCTACGCAAAGCGCCAAAGAGTGACATACCGGTCATCCTCGAC
GTCATGCGTCGCCAAGCGGCCGACCTTGCGCAGGTGCGAGTAAGCGTAAG
CAAACGTCAAGCAGACGGTCAGACGATTTTCTGTATGTAGGATATTATGA
ACCCGCAACACTGCTGCCTTCCTCGATACGCTTCGCCCCAGCGCCGTCCT
TTGCAAGGTAGAGGGACTGTCTACGCACGTGCAGAACCTCAACCAAGAGA
CGCCACGCACCAAGAATAAATGCGCCGATTTTCGTTGCGTATCGTCCCTC
GCTTGCATTTCCTTTTGTAAATTTAAGCAGATACCGGATATCGATCCCCT
TCTTGCTGCATGCCTCGACCGTGCGACGGAGGACATCGACCGCGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig129:504298..505243+

>mRNA_P-littoralis_Contig129.121.1 ID=mRNA_P-littoralis_Contig129.121.1|Name=mRNA_P-littoralis_Contig129.121.1|organism=Pylaiella littoralis U1_48|type=CDS|length=252bp|location=Sequence derived from alignment at P-littoralis_Contig129:504298..505243+ (Pylaiella littoralis U1_48)
ATGGCTGTAGAGAAGACCGACCTACTGCTGTGCGGAGTGGATCTAGAGGG
GGTTCTCGACAAGCAAGGCAAGGCGGGCATGCGCCGGGGCCTGGCCGACT
CTGTCGAGCGGCTACGCAAAGCGCCAAAGAGTGACATACCGGTCATCCTC
GACGTCATGCGTCGCCAAGCGGCCGACCTTGCGCAGATACCGGATATCGA
TCCCCTTCTTGCTGCATGCCTCGACCGTGCGACGGAGGACATCGACCGCG
TG
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