mRNA_P-littoralis_Contig129.119.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig129.119.1
Unique NamemRNA_P-littoralis_Contig129.119.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig129.119.1 vs. uniprot
Match: D7FNW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW1_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 9.230e-49
Identity = 93/112 (83.04%), Postives = 96/112 (85.71%), Query Frame = 1 
Query:    1 ERRLTTKAVREIREAYSSLHGEEIAAILAAQEGLTRIREAKLEESEARREAVRAELHSYGAVCAEPDLEVCCLQAEAVAHDHGLEDFMRKAGGLKHELLVLVQSMRSPEIMY 336
            E RLTT AVRE+REAY+ LHGEEIAAILAAQEGL  IREAK  ESEARREAVRAELH YGA C EPDLE CC+Q EAVAH  GLEDFMRKAGGLKHELL LVQ MRSPEIMY
Sbjct:  388 EGRLTTTAVREVREAYAILHGEEIAAILAAQEGLGSIREAKQNESEARREAVRAELHGYGAACTEPDLEACCMQVEAVAHARGLEDFMRKAGGLKHELLALVQGMRSPEIMY 499
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BLAST of mRNA_P-littoralis_Contig129.119.1 vs. uniprot
Match: A0A6H5KM06_9PHAE (DUF4455 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM06_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.060e-26
Identity = 52/61 (85.25%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:  154 VRAELHSYGAVCAEPDLEVCCLQAEAVAHDHGLEDFMRKAGGLKHELLVLVQSMRSPEIMY 336
            VRAELH YGA C EPDLE CC+Q EAVAHD GLEDFMRKAGGLKHELL LVQ MRSPEIMY
Sbjct:  369 VRAELHGYGAACTEPDLEACCVQVEAVAHDRGLEDFMRKAGGLKHELLALVQGMRSPEIMY 429
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BLAST of mRNA_P-littoralis_Contig129.119.1 vs. uniprot
Match: F0YNN6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNN6_AURAN)

HSP 1 Score: 80.9 bits (198), Expect = 1.890e-15
Identity = 48/98 (48.98%), Postives = 61/98 (62.24%), Query Frame = 1 
Query:   46 YSSLHGEEIAAILAAQEGLTRIREAKLEESEARREAVRAELHSYGAVCAEPDLEVCCLQAEAVAHDHGLEDFMRKAGGLKHELLVLVQSMRSPEIMYK 339
            +  ++  E  AI   +  L  +REAK  E+EARREA+RAELH YGA+  EPDLE      EAV HD  LE   R AGGLK EL  LV  +R P+++Y+
Sbjct:  287 FKEIYEAEDEAIARHEAELETLREAKRVEAEARREALRAELHRYGALEDEPDLESHARAIEAVTHDANLEALFRSAGGLKLELRELVAELRHPDLIYE 384
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BLAST of mRNA_P-littoralis_Contig129.119.1 vs. uniprot
Match: A0A7S4DLD8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DLD8_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 1.790e-11
Identity = 40/88 (45.45%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:   73 AAILAAQEGLTRIREAKLEESEARREAVRAELHSYGAVCAEPDLEVCCLQAEAVAHDHGLEDFMRKAGGLKHELLVLVQSMRSPEIMY 336
            AA  A +  L  IREAK  E+   REA+RAELH+YGA+ A P+ E        +  D   +DF R+AGGLK EL  L+Q + SP++ Y
Sbjct:    2 AAEAALEAELEAIREAKAAEAAGLREALRAELHAYGALEAPPEAEGPRAGLGELLRDPAADDFFRRAGGLKKELATLLQELGSPDLHY 89
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BLAST of mRNA_P-littoralis_Contig129.119.1 vs. uniprot
Match: A0A2D4BI97_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BI97_PYTIN)

HSP 1 Score: 58.9 bits (141), Expect = 9.420e-8
Identity = 30/77 (38.96%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:  109 IREAKLEESEARREAVRAELHSYGAVCAEPDLEVCCLQAEAVAHDHGLEDFMRKAGGLKHELLVLVQSMRSPEIMYK 339
            + +AK+ E+ A REA+R ELH +GA+  E D+  C  Q + V  D  LE+F R AGGL++EL  + + ++  +++Y+
Sbjct:  603 VHDAKVREALAMREALRLELHGFGALAPEGDITRCKQQIDGVLQDETLEEFFRMAGGLRNELDGISKRLQLADLIYQ 679
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BLAST of mRNA_P-littoralis_Contig129.119.1 vs. uniprot
Match: A0A836C970_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C970_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 8.270e-7
Identity = 45/139 (32.37%), Postives = 64/139 (46.04%), Query Frame = 1 
Query:   10 LTTKAVREIREAYSSLHGEEIAAILAAQEGLTRIREAKLEESEARREAVRAELHSYGAVCAEPDLEVCCLQAEAVAH---------------DHG---------------LEDFMRKAGGLKHELLVLVQSMRSPEIMY 336
            L T ++++I      L  EE +AI   +E L    +        RREA+RAELHSYGA+   PDL+  C   EA+ H                +G               LE +   AGGL+HEL VLV  ++ P+++Y
Sbjct:  457 LATASIKQISAQLQLLLAEEASAIHTIRERLQECSDETDTLVTQRREALRAELHSYGALQLPPDLQPHCHTVEALLHVSASALTGVVRCEWRQNGYSKLGFEAYNMLRPELEVYFSSAGGLRHELKVLVTELKDPDMIY 595
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig129.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FNW1_ECTSI9.230e-4983.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KM06_9PHAE2.060e-2685.25DUF4455 domain-containing protein n=1 Tax=Ectocarp... [more]
F0YNN6_AURAN1.890e-1548.98Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S4DLD8_HETAK1.790e-1145.45Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A2D4BI97_PYTIN9.420e-838.96Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A836C970_9STRA8.270e-732.37Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig129contigP-littoralis_Contig129:502867..504298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FNW1
Preferred nameCCDC180
PFAMsDUF4455,DUF4456,RBP_receptor
Model size341
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.51e-49
EggNOG OGs2CN0H@1|root,2QT47@2759|Eukaryota
DescriptionDomain of unknown function (DUF4455)
Cds size339
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789577.3563693-CDS-P-littoralis_Contig129:502866..5029791680789577.3563693-CDS-P-littoralis_Contig129:502866..502979Pylaiella littoralis U1_48CDSP-littoralis_Contig129 502867..502979 +
1680789577.3664231-CDS-P-littoralis_Contig129:503529..5037251680789577.3664231-CDS-P-littoralis_Contig129:503529..503725Pylaiella littoralis U1_48CDSP-littoralis_Contig129 503530..503725 +
1680789577.3773782-CDS-P-littoralis_Contig129:504266..5042961680789577.3773782-CDS-P-littoralis_Contig129:504266..504296Pylaiella littoralis U1_48CDSP-littoralis_Contig129 504267..504296 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig129.119.1prot_P-littoralis_Contig129.119.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig129 502867..504296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig129.119.1

>prot_P-littoralis_Contig129.119.1 ID=prot_P-littoralis_Contig129.119.1|Name=mRNA_P-littoralis_Contig129.119.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=113bp
ERRLTTKAVREIREAYSSLHGEEIAAILAAQEGLTRIREAKLEESEARRE
AVRAELHSYGAVCAEPDLEVCCLQAEAVAHDHGLEDFMRKAGGLKHELLV
LVQSMRSPEIMYK
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mRNA from alignment at P-littoralis_Contig129:502867..504298+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig129.119.1 ID=mRNA_P-littoralis_Contig129.119.1|Name=mRNA_P-littoralis_Contig129.119.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1432bp|location=Sequence derived from alignment at P-littoralis_Contig129:502867..504298+ (Pylaiella littoralis U1_48)
GAGCGACGGCTTACAACGAAAGCCGTCCGCGAAATTCGAGAAGCGTATTC
GAGCTTGCACGGGGAGGAGATCGCTGCCATCTTGGCCGCACAAGAAGGCC
TGACGCGTATTCGGTGAGGGTCTGTAAAGCTAGGTTTCCTCGACACGTGC
GCCGTGAGGAGTAGGGAGAGAGAGAGAGAGAGAGAGAGGGGAGGATTCTG
TTCTTGTGCTCCATAAGAACGTCATTTTGGGGGGGAAAGAGACTGTGGTT
TTTGTACAGATCCGTTTCTGGCTCCGCTTGCCTGTTGAACTTGCCCCCTT
GCCTGCTGCGGGGTGATGTTGAGGTGGTTTATTGGTCTTCCGGCTTGTGT
ATCACACGTGTCTAACGTGTCGTTTCGCAAAGCCGCCAAGAAGATCAATC
GGCGTCAATACATGTCGACACGATTCACGAGTTGACACCTGACAAGACGA
ATTAAACATCTCAAGATCTTTGAACAAACCGCCGTAGAATCGTGGCTCTC
TGTTTCCCACCACGTCCGCCGGAGGCCGCTTCGTTCACCCCCCTTCCGTT
CATTCCCTAAAGCATATTCCCTTTTTCCCCGGCACCAAACCAAAACTGTT
TACTCATCTCACCACAATGTGAGAAATACAAAACAAACTACGATATATAC
GTGAAAACAACAGCGAAGCGAAACTTGAGGAGTCCGAAGCACGCCGTGAA
GCGGTTAGGGCGGAGCTGCACAGTTACGGCGCCGTTTGCGCCGAACCCGA
CCTGGAGGTGTGCTGCCTTCAGGCGGAGGCCGTGGCTCACGACCATGGTC
TAGAGGACTTCATGAGGAAGGCCGGTGGGCTCAAGCATGAGCTCCTGGTC
TTGGTGCAGGTTGGCTTGTTGTTTTTGGTATCGATGTTGAAGCCAATGGA
AGGGGGGTGGAGCAGCGGCTGTTGGCTGTTGGTTCGGTGTCTGTCTTAGC
CCTGGATCGTTGCTACAGTATCGTCAGTGGAGGGAGATGAGTGGTCATGC
GAAAGGTAGCCGGGGCATGAGAAGGTCGTGAAACTGCTCATAGCTACGAT
CAGGTTGGAAAAGTAAATAATTGGGAGAGCAGTGTGAGGCGGGGTTGTGA
GCGTTGGACCTTGCTGAGCAAGCAGTATCTGTCACGGTGGAGGGGGTGTG
TATCGTGAGAAGGCGTGTGGCGTCCTTTCTCACGTACGTGCGTAAAGCGA
GGGCCTTCGTTTGTCGGTAGAGCATTGCTGAGATCTCTGCACAATCGTAT
TTTCCACCAACTCAAACATTGTAATGAAAGCGAAGAGTAGGTCCTACACG
GGAACCTTGCTCACTTCGTGTACGGCTATCCCTCCATCGCCTAGATTTTT
CAGCTCTCCCTGTGTAATGCTGTTCCGTGCCCCTTGCAAAAATACTGTAG
AGTATGCGCAGCCCTGAAATAATGTACAAGAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig129:502867..504298+

>mRNA_P-littoralis_Contig129.119.1 ID=mRNA_P-littoralis_Contig129.119.1|Name=mRNA_P-littoralis_Contig129.119.1|organism=Pylaiella littoralis U1_48|type=CDS|length=339bp|location=Sequence derived from alignment at P-littoralis_Contig129:502867..504298+ (Pylaiella littoralis U1_48)
GAGCGACGGCTTACAACGAAAGCCGTCCGCGAAATTCGAGAAGCGTATTC
GAGCTTGCACGGGGAGGAGATCGCTGCCATCTTGGCCGCACAAGAAGGCC
TGACGCGTATTCGCGAAGCGAAACTTGAGGAGTCCGAAGCACGCCGTGAA
GCGGTTAGGGCGGAGCTGCACAGTTACGGCGCCGTTTGCGCCGAACCCGA
CCTGGAGGTGTGCTGCCTTCAGGCGGAGGCCGTGGCTCACGACCATGGTC
TAGAGGACTTCATGAGGAAGGCCGGTGGGCTCAAGCATGAGCTCCTGGTC
TTGGTGCAGAGTATGCGCAGCCCTGAAATAATGTACAAG
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