mRNA_P-littoralis_Contig129.113.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig129.113.2
Unique NamemRNA_P-littoralis_Contig129.113.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig129.113.2 vs. uniprot
Match: D7FTW6_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW6_ECTSI)

HSP 1 Score: 590 bits (1522), Expect = 3.890e-196
Identity = 364/563 (64.65%), Postives = 400/563 (71.05%), Query Frame = 3 
Query:   24 MDMGAET--VAPASPEDVVDSPSDRPSKEPEKPESTPVAVEAVAAPAAEEGSSSSVVDSGDDGSVSPQPGASAPAEVSSDDTSGKEDTPEGEIAAXXXXXXXXVPVEELSDETKAALVKQVEFYFSDENLPTDAFMKKRVKAGGAQGWVPLKVICSFPKVKKLSKDIRAVAQALKGSELLVVTKATRVRRKTPFKFPDKDGMSDVIARTVVAVNIPAESTVESLTPFFSACGVAEAVRLIHKNKQ------DSRGSQIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRNSWRGGLRVSLANGVTVEKALAKLKAAAGKKARQEQKDRVNSRSPFERAERRGNADGNVRDGQMRSRSLTELELESTTGANDGAGRRGREQRSPPPDRRIPREDEGSSGDGVEGTPTRTTXXXXXXXXXXXXXRKPRSVSNVDALYDG--GGGGGRIQTGSLSRHD--TAGDGLPRKGVVQTLSSEGWSWIKKDGSGSRKSGNRIPFAMGDVVIKDGEQQQPLQKGDLVEYRAWKDSEGRLMAVRVERAKERPXXXXXXXXXXXTRATQAHFR 1676
            MD+  +T  V P SPE VV S +             P+  E VAAPA+EE S   VV+ G++G                  TSGKEDT   E+A          PVEEL ++TKAALVKQVEFYFSDENLPTDAFMKK+VKAGGAQGWVPLKVICSFPKVKK+SKDIRA+A AL+ S+ LVV KATRVRRKTPFKFPDKDG +DV +RTVVAVNIPAESTVESLTPFFS+CGVAE +R+IHK+K       D+R S IQAP GPNRDLYATCQFSTLEEAIRAVNELTDR SWRGGLRVSLANGVTVEKALAKLKAA+ KKA+QEQK RVNSRSP +R +R      NVRDGQMRSRSLTELELE T GA+ GA  R                                 XXXXXX       RKPRSVSNVDAL+    GG GG I+ GS  RH   +AGDGLPRKGVVQTLSSEGWSWIKKDG GSRKSGNRIPF MGDVV+KDGEQ+QPLQKGD VEYR WKD+EGR MAVRVERAKERP           +R+TQAHFR
Sbjct:    1 MDVRDDTAVVVPPSPEPVVASSA-----------KMPLDTETVAAPASEEASGPVVVEDGENGLAPXXXXXXXXXXXXXXXTSGKEDT--AEVAP---------PVEELPEDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKMSKDIRAIALALEDSQALVVAKATRVRRKTPFKFPDKDGRADVTSRTVVAVNIPAESTVESLTPFFSSCGVAELIRVIHKSKTAGTTKTDNRSSGIQAPAGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRVSLANGVTVEKALAKLKAASNKKAKQEQKQRVNSRSPVDRGQR------NVRDGQMRSRSLTELELERTAGASGGASSRXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXGEAAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTMGSAGDGLPRKGVVQTLSSEGWSWIKKDGQGSRKSGNRIPFVMGDVVMKDGEQRQPLQKGDHVEYRVWKDTEGRSMAVRVERAKERPRPAGGAVGSG-SRSTQAHFR 525
[Close]
BLAST of mRNA_P-littoralis_Contig129.113.2 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 3.950e-42
Identity = 105/155 (67.74%), Postives = 118/155 (76.13%), Query Frame = 3 
Query:  126 PVAVEAVAAPAAEEGSSSSVVDSGDDGSVSPQPGASAPAEVSSDDTSGKEDTPEGEIAAXXXXXXXXVPVEELSDETKAALVKQVEFYFSDENLPTDAFMKKRVKAGGAQGWVPLKVICSFPKVKKLSKDIRAVAQALKGSELLVVTKATRVRRK 590
            P+  E VAAPA+EEGS   V + G+ G   P   AS+ A VSSD+T+GKEDT E              PVEEL ++TKAALVKQVEFYFSDENLPTDAFMKK+VKAGGAQGWVPLKVICSFPKVKKLSKDIRA+A AL+ S+ LVV KATRVRRK
Sbjct: 1108 PLNTETVAAPASEEGSGPVVAEDGESGLAPPAAMASSAAVVSSDETNGKEDTSEAP------------PVEELPEDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSKDIRAIALALEDSQALVVAKATRVRRK 1250
[Close]
BLAST of mRNA_P-littoralis_Contig129.113.2 vs. uniprot
Match: A0A5J4Y4J7_9CHLO (La-related 7 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y4J7_9CHLO)

HSP 1 Score: 140 bits (352), Expect = 2.190e-32
Identity = 79/183 (43.17%), Postives = 114/183 (62.30%), Query Frame = 3 
Query:  360 AALVKQVEFYFSDENLPTDAFMKKRVKAGGAQGWVPLKVICSFPKVKKLSKDIRAVAQALKGSELLVVTKATRVRRKTPFKFPDKDGMSDVIARTVVAVNIPAESTVESLTPFFSACGVAEAVRLIHKNKQDSRGSQI--QAPVGPNRDLYATCQFSTLEEAIRAVNELTDRNSWRGGLRVSL 902
            A +VKQV FYFSD NLPTD F+ K V+    +GWVP+++I SF ++K LSKDI+ +A AL+ S  LVV+   RVRRK P    D+   ++V+ RT +  N+P ++T++SLT  FSA G  + VR+   N      +Q    A +  +R L+A  +F   E+   AV +LTD N+WR GLR ++
Sbjct:   50 AKIVKQVNFYFSDTNLPTDNFLLKEVRKT-PEGWVPIRLIASFKRMKSLSKDIKVIAAALETSTELVVS-GHRVRRKEPLPQVDE---TEVLYRTAIVDNLPDQATIDSLTGMFSAAGKVKMVRICQPNSGPRSIAQSIPGADLAVSRQLHALIEFENQEQVAAAVKQLTDSNNWRSGLRAAI 227
[Close]
BLAST of mRNA_P-littoralis_Contig129.113.2 vs. uniprot
Match: A0A7S0IBH0_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IBH0_MICPS)

HSP 1 Score: 131 bits (330), Expect = 5.860e-30
Identity = 87/196 (44.39%), Postives = 113/196 (57.65%), Query Frame = 3 
Query:  342 LSDETKAALVKQVEFYFSDENLPTDAFMKKRVKAGGAQGWVPLKVICSFPKVKKLSKD---IRAVAQALKG-SELLVVTK-ATRVRRKTPFKFPDKDGMSDVIARTVVAVNIPAESTVESLTPFFSACGVAEAVRLIHKNKQDSRG----SQIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRNSWRGGLRVSL 902
            L+DE    +VKQVEFYFSD NLPTDAF+ K+V+A    G+VP+ V+C F ++K L K    I  VA  L+  SE LVV++   RV+R TP   PD D + DV ARTVVA N   + T+ES+   FSA G    VR+ H   Q   G    S +     P+  ++A  +F T ++A RA   L D   WR GLRV L
Sbjct:   73 LTDEQVDKIVKQVEFYFSDANLPTDAFLMKKVRAD-PNGFVPIGVVCGFNRMKTLLKKHPPIETVAAILRQHSEALVVSEDGIRVQRATP--LPDID-LEDVQARTVVAENFKTQPTIESVRDLFSAAGDVAMVRVRHPGMQTPAGATKPSGLDLIATPSNAVHALIEFKTRDDAARAAETLNDDEDWRNGLRVRL 264
[Close]
BLAST of mRNA_P-littoralis_Contig129.113.2 vs. uniprot
Match: C1E3K5_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E3K5_MICCC)

HSP 1 Score: 133 bits (335), Expect = 1.010e-29
Identity = 88/196 (44.90%), Postives = 114/196 (58.16%), Query Frame = 3 
Query:  342 LSDETKAALVKQVEFYFSDENLPTDAFMKKRVKAGGAQGWVPLKVICSFPKVKKLSKD---IRAVAQALKG-SELLVVTK-ATRVRRKTPFKFPDKDGMSDVIARTVVAVNIPAESTVESLTPFFSACGVAEAVRLIHKNKQDSRG----SQIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRNSWRGGLRVSL 902
            L+DE    +VKQVEFYFSD NLPTDAF+ K+V+A    G+VP+ V+C F ++K L K    I  VA  L+  SE LVV++   RVRR TP   PD D + DV ARTVVA N   + T+ES+   FSA G    VR+ H   Q   G    S +     P+  ++A  +F+T ++A RA   L D   WR GLRV L
Sbjct:   59 LTDEQVDKIVKQVEFYFSDANLPTDAFLMKKVRAD-PNGFVPIGVVCGFNRMKTLLKKHPPIETVAAILRQHSEALVVSEDGIRVRRATP--LPDID-LEDVQARTVVAENFKTQPTIESVRDLFSAAGDVAMVRVRHPGMQTPAGATKPSGLDLIATPSNAVHALIEFNTRDDAARAAETLNDDKDWRNGLRVRL 250
[Close]
BLAST of mRNA_P-littoralis_Contig129.113.2 vs. uniprot
Match: A0A2R6XE71_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XE71_MARPO)

HSP 1 Score: 136 bits (342), Expect = 1.010e-29
Identity = 80/191 (41.88%), Postives = 121/191 (63.35%), Query Frame = 3 
Query:  342 LSDETKAALVKQVEFYFSDENLPTDAFMKKRVKAGGAQGWVPLKVICSFPKVKKLSKDIRAVAQALKGSELLVVTK-ATRVRRKTPFKFPDKDGMSDVIARTVVAVNIPAESTVESLTPFFSACGVAEAVRLIHK---NKQDSRGSQIQAPVGPNRDLYATCQFSTLEEAIRAVNELTDRNSWRGGLRVSL 902
            +++E KA +VKQVEFYFSD+NLPTD ++ K VK    +G+VP+ V+ SF K+K L K+   VA AL+ S LLVV++   +VRR  P   PD D + +V +RTVVA N+P + ++ES+   F + G  + VR+      N      ++ ++ +  +  L+A  +F T+E+A +AV+ LTD  +WR GLRV L
Sbjct:  195 VNEELKAKIVKQVEFYFSDQNLPTDNYLMKFVKKD-PEGFVPIPVVASFRKIKNLVKNHGIVAAALRNSTLLVVSEDGKKVRRAQP--LPDVD-LEEVQSRTVVAENLPEDHSIESVEQLFGSVGNVKMVRICQPEAANGASQTAAKFKSDMVVSNKLHALIEFETVEQAEKAVSALTDERNWRSGLRVRL 381
[Close]
BLAST of mRNA_P-littoralis_Contig129.113.2 vs. uniprot
Match: D8QWC1_SELML (Uncharacterized protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QWC1_SELML)

HSP 1 Score: 129 bits (323), Expect = 2.450e-29
Identity = 77/193 (39.90%), Postives = 116/193 (60.10%), Query Frame = 3 
Query:  342 LSDETKAALVKQVEFYFSDENLPTDAFMKKRVKAGGAQGWVPLKVICSFPKVKKLSKDIRAVAQALKGSELLVVTK-ATRVRRKTPFKFPDKDGMSDVIARTVVAVNIPAESTVESLTPFFSACGVAEAVRLIHKNKQDSRGSQIQAPVGP-----NRDLYATCQFSTLEEAIRAVNELTDRNSWRGGLRVSL 902
            LS++T+  +V+QVEFYFSD NLPTD ++ K +K    +G+VP+ +I SF K+K+L+K+  A+A AL+ S  LVV++   +VRR  P    D D   ++  RTVVA N+P + +++SL   F   G  + VR+      +S  S   A         +  L+A  ++ TLE+A +AV ELTD+ +WR GL V L
Sbjct:   76 LSEDTRTQVVQQVEFYFSDANLPTDNYLMKFIKKD-PEGFVPIPIIGSFRKIKQLTKNYGALAAALRSSSKLVVSEDGKKVRRAEPLADIDLD---EIQGRTVVAENLPEDHSIQSLEKLFGTIGSVKMVRVCEPGSANSVNSAALAKHSKTDRVVSNKLHALVEYETLEQAEKAVAELTDQRNWRSGLHVRL 264
[Close]
BLAST of mRNA_P-littoralis_Contig129.113.2 vs. uniprot
Match: C1N3J9_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N3J9_MICPC)

HSP 1 Score: 131 bits (329), Expect = 1.050e-28
Identity = 85/201 (42.29%), Postives = 111/201 (55.22%), Query Frame = 3 
Query:  342 LSDETKAALVKQVEFYFSDENLPTDAFMKKRVKAGGAQGWVPLKVICSFPKVKKLSK----DIRAVAQALKGSELLVVTKA-TRVRRKTPFKFPDKDGMSDVIARTVVAVNIPAES-----TVESLTPFFSACGVAEAVRLIHKNKQDSRGSQIQAPVG------PNRDLYATCQFSTLEEAIRAVNELTDRNSWRGGLRV 896
            L+ E K  +  QVEFYFSD NLPTDAF+ K+V+AGG +GWVPL VICSF ++K+L K     +     A  GS LLV   A T VRR  P   PD D + +V +RTV+A N P  +     T+E++   F++ G    VR+ H       G       G      PN  ++A  +F T EEA+RAV  L +   WR GLRV
Sbjct:   73 LTAEQKEKIFAQVEFYFSDANLPTDAFLMKKVRAGGDEGWVPLDVICSFNRMKQLLKKRPHSVVCDVLAELGSALLVSDDAKTAVRRVAP--LPDVD-LEEVQSRTVLAENFPGVNAGEAPTIEAVRELFASAGEVLVVRVRHPGMTQPAGVAAAKSSGLDLIQTPNAHVHALVEFKTAEEALRAVTTLNNDRDWRNGLRV 270
[Close]
BLAST of mRNA_P-littoralis_Contig129.113.2 vs. uniprot
Match: A0A7R9TLI1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TLI1_MICPS)

HSP 1 Score: 131 bits (329), Expect = 1.430e-28
Identity = 85/201 (42.29%), Postives = 111/201 (55.22%), Query Frame = 3 
Query:  342 LSDETKAALVKQVEFYFSDENLPTDAFMKKRVKAGGAQGWVPLKVICSFPKVKKLSK----DIRAVAQALKGSELLVVTKA-TRVRRKTPFKFPDKDGMSDVIARTVVAVNIPAES-----TVESLTPFFSACGVAEAVRLIHKNKQDSRGSQIQAPVG------PNRDLYATCQFSTLEEAIRAVNELTDRNSWRGGLRV 896
            L+ E K  +  QVEFYFSD NLPTDAF+ K+V+AGG +GWVPL VICSF ++K+L K     +     A  GS LLV   A T VRR  P   PD D + +V +RTV+A N P  +     T+E++   F++ G    VR+ H       G       G      PN  ++A  +F T EEA+RAV  L +   WR GLRV
Sbjct:   52 LTAEQKEKIFAQVEFYFSDANLPTDAFLMKKVRAGGDEGWVPLDVICSFNRMKQLLKKRPHSVVCDVLAELGSALLVSDDAKTAVRRVAP--LPDVD-LEEVQSRTVLAENFPGVNAGEAPTIEAVRELFASAGEVLVVRVRHPGMTQPAGVAAAKSSGLDLIQTPNAHVHALVEFKTAEEALRAVTTLNNDRDWRNGLRV 249
[Close]
BLAST of mRNA_P-littoralis_Contig129.113.2 vs. uniprot
Match: A0A2K1LA96_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1LA96_PHYPA)

HSP 1 Score: 132 bits (331), Expect = 4.300e-28
Identity = 81/194 (41.75%), Postives = 118/194 (60.82%), Query Frame = 3 
Query:  342 LSDETKAALVKQVEFYFSDENLPTDAFMKKRVKAGGAQGWVPLKVICSFPKVKKLSKDIRAVAQALKGSELLVVTK-ATRVRRKTPFKFPDKDGMSDVIARTVVAVNIPAESTVESLTPFFSACGVAEAVRLIHKNKQDSRGSQIQAPVGPNRD------LYATCQFSTLEEAIRAVNELTDRNSWRGGLRVSL 902
            L++ETKA +VKQVEFYFSD NLPTD ++ K VK   ++G+VP+ V+ SF K+K L K+   +A  L+ S  LVV++   +VRR  P   P+ D + ++ ARTVVA N+P + ++ESL   F   G  + VR+   + + + G+       P  D      L+A  ++ T+E A +AV ELTD  +WR GLRV L
Sbjct:  241 LTEETKAKIVKQVEFYFSDTNLPTDNYLMKFVKKD-SEGFVPIPVVASFRKIKNLVKNHGVLAATLRNSTQLVVSEDGKKVRRAHP--LPEVD-LEEIQARTVVAENLPEDHSIESLEQLFGKVGTVKMVRIC--SPEAANGANATGAKHPKTDMLVSNKLHALVEYETVELAEKAVAELTDERNWRSGLRVRL 428
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig129.113.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTW6_ECTSI3.890e-19664.65HTH La-type RNA-binding domain-containing protein ... [more]
A0A6H5JW40_9PHAE3.950e-4267.74HTH La-type RNA-binding domain-containing protein ... [more]
A0A5J4Y4J7_9CHLO2.190e-3243.17La-related 7 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608... [more]
A0A7S0IBH0_MICPS5.860e-3044.39Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
C1E3K5_MICCC1.010e-2944.90Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A2R6XE71_MARPO1.010e-2941.88Uncharacterized protein n=3 Tax=Marchantia polymor... [more]
D8QWC1_SELML2.450e-2939.90Uncharacterized protein (Fragment) n=2 Tax=Selagin... [more]
C1N3J9_MICPC1.050e-2842.29Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7R9TLI1_MICPS1.430e-2842.29Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A2K1LA96_PHYPA4.300e-2841.75Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig129contigP-littoralis_Contig129:460659..471585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FTW6
Preferred nameLARP6
PFAMsLa,RRM_1,RRM_3,SUZ-C
Model size3671
Max annot lvl2759|Eukaryota
KEGG koko:K15191,ko:K18733
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005844,GO:0006417,GO:0008092,GO:0008150,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010712,GO:0010714,GO:0017022,GO:0019222,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032965,GO:0032967,GO:0032991,GO:0034248,GO:0034250,GO:0035613,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044093,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045727,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0050789,GO:0050794,GO:0051098,GO:0051099,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0080090,GO:0097159,GO:1901363,GO:1902415,GO:1902416,GO:1905214,GO:1905216,GO:1990825,GO:1990904,GO:2000112
Exons12
Evalue1.59e-204
EggNOG OGsCOG5193@1|root,KOG1855@2759|Eukaryota
Ec32 ortholog descriptionRNA-binding protein Lupus La
Ec32 orthologEc-12_002800.1
DescriptionRNA processing
Cds size1956
COG categoryJO
BRITEko00000,ko03019,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789576.9696019-UTR-P-littoralis_Contig129:460658..4606811680789576.9696019-UTR-P-littoralis_Contig129:460658..460681Pylaiella littoralis U1_48UTRP-littoralis_Contig129 460659..460681 +
1680789577.1047902-UTR-P-littoralis_Contig129:469893..4715851680789577.1047902-UTR-P-littoralis_Contig129:469893..471585Pylaiella littoralis U1_48UTRP-littoralis_Contig129 469894..471585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789576.9803462-CDS-P-littoralis_Contig129:460681..4607821680789576.9803462-CDS-P-littoralis_Contig129:460681..460782Pylaiella littoralis U1_48CDSP-littoralis_Contig129 460682..460782 +
1680789576.991056-CDS-P-littoralis_Contig129:462816..4629801680789576.991056-CDS-P-littoralis_Contig129:462816..462980Pylaiella littoralis U1_48CDSP-littoralis_Contig129 462817..462980 +
1680789577.0006728-CDS-P-littoralis_Contig129:463560..4637281680789577.0006728-CDS-P-littoralis_Contig129:463560..463728Pylaiella littoralis U1_48CDSP-littoralis_Contig129 463561..463728 +
1680789577.00961-CDS-P-littoralis_Contig129:463931..4640651680789577.00961-CDS-P-littoralis_Contig129:463931..464065Pylaiella littoralis U1_48CDSP-littoralis_Contig129 463932..464065 +
1680789577.0217743-CDS-P-littoralis_Contig129:464584..4646441680789577.0217743-CDS-P-littoralis_Contig129:464584..464644Pylaiella littoralis U1_48CDSP-littoralis_Contig129 464585..464644 +
1680789577.0337155-CDS-P-littoralis_Contig129:464970..4650771680789577.0337155-CDS-P-littoralis_Contig129:464970..465077Pylaiella littoralis U1_48CDSP-littoralis_Contig129 464971..465077 +
1680789577.0422206-CDS-P-littoralis_Contig129:465578..4656661680789577.0422206-CDS-P-littoralis_Contig129:465578..465666Pylaiella littoralis U1_48CDSP-littoralis_Contig129 465579..465666 +
1680789577.051021-CDS-P-littoralis_Contig129:466226..4663661680789577.051021-CDS-P-littoralis_Contig129:466226..466366Pylaiella littoralis U1_48CDSP-littoralis_Contig129 466227..466366 +
1680789577.061338-CDS-P-littoralis_Contig129:466890..4672681680789577.061338-CDS-P-littoralis_Contig129:466890..467268Pylaiella littoralis U1_48CDSP-littoralis_Contig129 466891..467268 +
1680789577.0734892-CDS-P-littoralis_Contig129:467788..4679271680789577.0734892-CDS-P-littoralis_Contig129:467788..467927Pylaiella littoralis U1_48CDSP-littoralis_Contig129 467789..467927 +
1680789577.0823045-CDS-P-littoralis_Contig129:468766..4689391680789577.0823045-CDS-P-littoralis_Contig129:468766..468939Pylaiella littoralis U1_48CDSP-littoralis_Contig129 468767..468939 +
1680789577.091013-CDS-P-littoralis_Contig129:469589..4698931680789577.091013-CDS-P-littoralis_Contig129:469589..469893Pylaiella littoralis U1_48CDSP-littoralis_Contig129 469590..469893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig129.113.2prot_P-littoralis_Contig129.113.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig129 460682..469893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig129.113.2

>prot_P-littoralis_Contig129.113.2 ID=prot_P-littoralis_Contig129.113.2|Name=mRNA_P-littoralis_Contig129.113.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=652bp
MDMGAETVAPASPEDVVDSPSDRPSKEPEKPESTPVAVEAVAAPAAEEGS
SSSVVDSGDDGSVSPQPGASAPAEVSSDDTSGKEDTPEGEIAAAAAAAAA
AVPVEELSDETKAALVKQVEFYFSDENLPTDAFMKKRVKAGGAQGWVPLK
VICSFPKVKKLSKDIRAVAQALKGSELLVVTKATRVRRKTPFKFPDKDGM
SDVIARTVVAVNIPAESTVESLTPFFSACGVAEAVRLIHKNKQDSRGSQI
QAPVGPNRDLYATCQFSTLEEAIRAVNELTDRNSWRGGLRVSLANGVTVE
KALAKLKAAAGKKARQEQKDRVNSRSPFERAERRGNADGNVRDGQMRSRS
LTELELESTTGANDGAGRRGREQRSPPPDRRIPREDEGSSGDGVEGTPTR
TTTPTTTPTTTPTTTRKPRSVSNVDALYDGGGGGGRIQTGSLSRHDTAGD
GLPRKGVVQTLSSEGWSWIKKDGSGSRKSGNRIPFAMGDVVIKDGEQQQP
LQKGDLVEYRAWKDSEGRLMAVRVERAKERPRPKGGGGSGGGTRATQAHF
RMAVGPEEGKSGFAAGRGRPIVVEPPPPGSGSGGGGGGGGVGAPAGGVGE
VLRRPRGSSMGGADSKVFVPSTAGAAAAGAAGEATPVVVVAPSPQQFEDA
D*
back to top

mRNA from alignment at P-littoralis_Contig129:460659..471585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig129.113.2 ID=mRNA_P-littoralis_Contig129.113.2|Name=mRNA_P-littoralis_Contig129.113.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=10927bp|location=Sequence derived from alignment at P-littoralis_Contig129:460659..471585+ (Pylaiella littoralis U1_48)
CTGCACCTTCCCCTTTCAACGCGATGGACATGGGAGCTGAGACCGTCGCA
CCTGCTTCTCCTGAGGATGTGGTTGATTCCCCTTCCGATCGTCCCTCAAA
GGAGCCGGAGAAGCCAGAGAGCACGTGAGTCATCTAGATTAGAACTCTCC
TCAAAAACGAGCACCGGGAAAAGTCGACGTGGTAAATTTCTATGATGGTC
GTAGTATAGAGGGCCCTTCTGAAATTCGTAGGTGCGAGGTACAATTGTAT
GTAGGTCTGCTTTGTTTCGTCAACGTCTGGGGCTGCCACCTACTGCCGTC
TGAAGAGCCTACCACGAGCAGTCCATCATCCCTGACCTCGACGGTGCATG
GTGTGCTATACCTCTCCTGTCACGACGCTGCACTGCTTGCCTGAAAATTG
GGCGTTCGTGTGTTCCTGCCACAGCAGTGCAGCTATTAGACGATACCCCG
TGTAAACGTTTTTGGGCCGGATTCACCCATCCCTTTGTTACGATGTAGAG
AGGGAGGCCCGTACACGTGCGGCGAGATAGGGACAATGTTCGACGTTAGA
CGTTAGATGGCACTTCGAAGCACGAAGTATGATATGATACTTCGAAGTAT
AGCGGTCGCAGATGATGGACCAAGTAAGTCGTGCTGCACGGACATATCGT
ACCTGGTATGTATATGCTCTCCCTCCGAAACTTTGTGCACACGAAATGAA
ACGCTTCCATCGTCTCTCATGTATCATACATGCATGTTGAGTATACACAG
CAGCACAGCCTTACGCAGCAGGTGTCACGTGGGAATTCGTCCCGGCGACA
CCGGCCCGAGGTAGGATGTAGATACTCTGTATCCTACACGTGTCTCTCGT
CTACAAAAAACCATTTATATCATAGAAGTACTCGTGAAACATTTTGACCT
CAAGAAAGAGGTACCGTCTATGGCGCAACATGATTTCTAAACTCCTGAAA
TCGGCAGGGAGTAGTAGCCTACACCAGTCAAGATAAAATGTTTTGTCTCA
AGATCACACGACCCTTAATCGTCGGGTGTGCGTGAAGTTTTGAAGTTTTG
ACTCATGACGGGCTCTAGAGCAGCAGCAGGCACAACAGGAAGAAACGCGC
TTTATCTTGATCATTCTTATACAATCTGGAAACGACCGGTACCCACCATC
ATGATGCAAGCATGTACGGAAACGAATTTTCACGTGCGCATTCGCCGTAC
TTGAAAAAAAAAAACTGTTTTCGCGCTCGGTTTCGAAAACCGTTGCGTGT
GGCTGTATGTCCTGTGTTTGTGTGTGAGTGTTGTCGTCTCATGTATTCTG
GACGTCAGGTCGTTGTACTGGTAAGTGCGGAAAGAGAGCGAGCGGTGTGG
AGGCAAAAAAATCCCCCCGGGGCACAATTTGCTGCTGTGGTGTGACATAC
GCTTTATTCGGGTACGTGAGGAAAATGGACACTCCGCCGTCTTCCCCCGA
GCCGCTCCCAGGCACGTGGCTTGCATGTCATCAATCAACACATTTTAGCC
ACGGTTGGTGTATTGTACTGCTGTGAGCGAGCTCCACTTGTAGCGAGTTC
GTATCATGCACGGCCGAAACAAGTGTGAGCTGACACGGCCCTACCCATCG
TCCTATTCTCTTTGTTTTTCATTTCCCTCCTAGCACGATATGTGCTTGGT
TTGTGACCACGGGCTAGACTACGGTGGTGGTGAGCTTATGTGAGAATCAA
CAACAATATCCTTAGATAAACCCGTACAGTACGTGTACAGCAGTAGCAGC
AGAGAATCCAACGAGATATACCGCTCTCCCCCCCCTCCCTACCTCGAGAT
GGTCCGGACTGAGGGGCAAATCGTCACCGGCCTTCCTCCGGCGAACAAAA
GTGGCGAACGTGAAACCATTCACCTTGAATCTTCGACGAGACCAATCTCG
TGTTCGTGATTCGGCTAGATTCCTGCCGCGCGCAATGGCCGTGATGGCCC
CTCATTTTTTCGGAGCTGCGTGATGACGTGAAATGCTGGCACACAAGATA
TTCAGAAATCCCATGCTGTTAAGTCGGGTTGGGGGCTACTTCTGCTGTGG
GCTCGTACTCTCAGTCCTGTCGTGTCGCGTCGCGTCACAGAAAGAACAAC
CTATGCATTTTCTTCCTTTTTCTCCTCTTGTTTTTTTTTGGTGATTTCCC
TTTCACAGGCCTGTGGCCGTCGAGGCCGTGGCTGCACCGGCGGCCGAGGA
GGGGTCTTCGTCCAGCGTCGTCGACAGTGGGGACGATGGGTCGGTGTCGC
CCCAACCCGGCGCCTCCGCTCCTGCGGAAGTGAGCTCCGACGACACGAGC
GGAAAAGAGGACACTCCCGAAGGTGGGTCAGCAGCAATTTCCTGCGTGTT
TTGTGTTGTGATGCCGGCACATACAGTAGTGCATGCTTGTGGCGGGGGGG
GGGGGGGGGCGAACTTGTAGTCCGTAGTACCGTCCGTGTTCCACCCATAG
ATGTATGATGCCTTACATCTGTACTTGCTTTGATCTTTGATTACGTCGTG
GCGGAATGCACGCCGCACCTCATGGCGTTTTTGGTGTTTTTGGTGTTTAT
ATTTTCCGCCAGAATACGCACCACAATTCGTGAAGGGGCCGTACATACGC
TGCCATGGTTGCTGTGCAATGGCCGTGAGTGCACTCGCTCCTCAGTTTTT
CAGTGTGTGCGGCAACCCGCTGTCGTTTTTGTGTACTGTAGCTCAAGGGC
AGCCGCCACTTGTTGCCTTTCGACTTCCAGGGTTGTGCTTTGCCGCGCGG
AGTAGCTACTTTCCAGGCGTGCAGCTTACGCCTTTGAAATGTGCGAGATC
GTCCGCGACGGTGTTTAGGGTGGCTACTCGCTTTTTCTCTTAAAGTCGAG
TAACTCTCGCTCGCATCGCATCATGCGAAAAAAAAAATGCTCTATAAAGC
AGGAGAAATAGCGGCAGCGGCAGCGGCAGCGGCAGCGGCAGTGCCCGTGG
AGGAGCTATCGGACGAGACCAAAGCGGCCCTGGTGAAGCAGGTGGAGTTT
TACTTCAGTGACGAGAACCTGCCCACGGACGCCTTCATGAAGAAGCGAGT
CAAGGCCGGAGGAGCACAAGGTACATTAACAACACGAGAGAAAAGAGCTG
CAGGGTTGAGGGGGGGGGGTTGATTCGCTGGTTTCAGGGTGCCCCGACGA
TAACATGGTCTCCGGCTGTTGAAAACGTTTGAGTCCCCATCACACCTTTG
GATGTTCATAGCTCTGTGTTTCAGCTGAAACCCCAACGCGGATGACGGCA
ATCCTGACCCGTGACGATAACAGGCTGGGTGCCGCTGAAGGTGATATGTA
GCTTCCCGAAGGTGAAGAAGCTGTCGAAGGACATTCGCGCGGTCGCGCAA
GCCCTCAAGGGATCTGAGCTGCTTGTCGTGACGAAAGCGACCCGCGTGCG
GCGCAAGGTAGGTGGTGGTGGTGGTGGTGGTGGTGGTGATAAAGGGGGTG
TGCGTGGTTTTGTACTTTCCTACTGACTGCTGTCTTGCGAAGCTGCATAT
CCATGAAGCACCGACGAAATGTTACCCACATGTACTCTGATTCAGCGCTT
CTGCGCTGCTGTTAGTTTTGTTTTTGTTCTAGCGGCCGCGCGCCTAGTAG
CGAAGTCACGCACTCAGTTGAGATGCATTTGGTGTTTTTTTGCGTGCCAA
GCCTTAGCGAACACTTGCGAGCGCAAGCAATGAACGGCCTCGATAGGGGG
CTCAAACATTATGAAAGGCAGAGTCGGACGGGACATAAAAGACGATCTGC
GCATCGATACTTGCTTTTTTTTGTTGTTTGCTTTTTTTGTATGATACGAG
GAAAACGAATGAGGGAGTCCGAGAACGTCTCTGGAATTCTTTGTCTTTTT
TCTGGTTTTGATATGGCTGCTTTTCGTTGTTCTGGCTTGCGCTGTTTTTC
ACGTACGTGTATCCCACCTTTTCCAGACGCCGTTCAAGTTCCCGGATAAG
GACGGCATGTCTGACGTCATCGCCCGGACGGTCGTGGTGAGAGAGGAGTG
ATAAGAGAATGTCTCCCCCCAACTGGAAATTCCCGGTCACAGGGGCAAGT
CTGGTCCGGCATCGAGAGACGAGAGATGGAGAGAGAAAGAGAGACAGGGC
GGGTTATACAGCAAAAGTATGCAAACTGATGGGTATTCGTCAGTACTCGG
AACAGTACCATGGCGGTATGCTTGGCTTGACTTAGCCCTGCCCCCCCCCC
CCCCCAACTTCGATTCCCCGACGTGTTGGCGTTTCCCATCCCGTTCATTC
GCGTGCGCGCTCCCGAACAACTGCCGAAACGGCTTATAACGCGGAAACCC
TCGACATCACAGGCGGTGAACATCCCTGCTGAATCGACGGTGGAGTCTCT
GACGCCATTCTTTTCGGCCTGCGGAGTGGCCGAAGCGGTGCGCCTGATCC
ACAAGAACAAGCAGGACAGGTGAGCGAAACAAATCGTTGCATAGTACGGA
GCACGAAGTACGTTAAAACACAACTTACCCGCTCTTCAATTTTCGTGTCT
GCCACCGCGCTTTTACTATAAAACTATCGCATTGTGGATGAGTTTTTCGA
GGTCATTCGTGTCGCGGTCGAGGGGTGTATCACACCATGATGTTTCGTTT
ACTTTGTCTGAGGTTTCACCGACTGTCCTTGCTGGTCGGCTGCGTATGGC
CCGTTTGGGCTTGCCGGCACCAGAACGGCGGTGCACCCATTATTCCTCGC
TGATCGTTGTTGGTGTGATGTGTTAAACGCTCTTGTGTGCTGTTGCATGT
GCGAAGTGCGAATCGACGAACCCGGGCGGAAGCCTGAGCTTTCGCTCGCT
GCAAAATATATCACAACCACAAGCAGCGGCGTTAATTACCCTTCGGCCCT
TCTGAGTTTTGTCTCCGTGAAAGCTTTTTTCTCATCTCTCTTGTTCTGGT
TCTGGTTCTGGTTCTCGCAGCAGGGGTTCGCAAATCCAGGCGCCGGTTGG
CCCGAACCGCGACTTGTACGCGACCTGCCAGTTCTCCACCCTGGAAGAGG
CCATCAGGGTAAGTGGTGCCTGCTGCGAGGCTAGGATGAAGCGGCAGACA
GAAAGCAATTGAGAGAAGAGCTCAAGAGTTTCATCAGAAGGAAAAGCAAC
AGAAGTCGCGTCCTGTAAAATCAACGTGCTTTTGCGAACCCTGTGCGCTA
TGTGCAGCCGAGCAACTCTCGCGCTGTCGAAGGCGTGCTAAGTGCGTGTG
TGTGCGTGGACTTCTGAAGGTATCTCGGCTGCTTCGCGTGCGTGTGACCA
GCGGGTCCCATAGCTTGGTGTTTTAGTAGGATGTCGCCCGTACTAGCCAG
CCCGCATCGCATCGCATCGCATCGCATCGCACTGTCTGCGGTAGGTCGTT
CTCCGGAGGTGGCTTGACACGATTTGTGCCGCCTCGTGCTGCGCTTTGCT
GGCGCATCCCGGAGGGTGTGGCCCATCGCCTTATAAGTTGTTAGCGTAGT
GCTGTTGCTGTCGTCGTCGTCGTCGTCGCCTCTTTTGTTGGTGTTGATCC
CGTGACCCCTGATCCCCGTCTCCCTCGTCTTCACCCTTGTGTCGCGCGGC
GCGGCCCGGCCCTGCCAGGCTGTGAACGAGCTCACCGACAGAAACAGTTG
GCGGGGGGGGCTGCGAGTGTCGCTAGCTAACGGAGTGACGGTAGAAAAGG
CGTTGGCCAAGCTTAAGGCGGCGGCCGGTAAAAAGGCGAGGCAGGAACAG
AAGGACAGGTGAGCCGTTCGGCGGGGCGCACGCACCTGCATACGCCAAGG
CGACATCAAAAGCAGTTTTTTTTATTCGGAACCCTTTTTGGTGCCGAAGA
GGTCAGGTGATCGTGTTCTAACCTGTCGGGGATTGGCACAGGATTGGGAG
AACGGGGGCACGAGAAGGGATACATGGTAGCTGTACCGAGTAAACGATCG
TGAAAGCGAGGCATCCTTAGGTCCGAAACTTTGTGAGTTGCGTAGCGCCG
ATCCCGAGCCGCGTGCTCGACGTATACTAATCCGGCCTCGATGCAGGTTT
TCGCCTCGCTGAAAATCATCATGCCGGGGCCCGGGGGGCGGGGCTGTCGT
CCACACATACACGCACACGCACATCGTCGTCGTTGCCCCGATCTTTTCAA
AAGTGGCGTTCGGACGCTCAATGATTCGTCGCCAACGCTTTCCTTCCGTT
CTACGCCCGATTTTCCCGCGCCCCCCCCCCCCTCTTTTCTCTCCCTCGCA
CCTTGCCTACGTAATGCTCGGTCGGTGGCAAGGGTCAACTCGCGATCGCC
TTTCGAGCGCGCCGAACGCCGCGGAAACGCCGACGGCAACGTTCGGGATG
GGCAGATGCGCTCTCGGTCCCTGACGGAGCTGGAGCTGGAGAGCACGACG
GGGGCGAACGACGGGGCCGGGAGGCGAGGCAGAGAACAGCGCTCGCCCCC
CCCTGATCGTCGAATCCCGCGAGAGGATGAAGGCAGCAGCGGGGACGGGG
TGGAGGGGACGCCGACAAGGACGACGACGCCGACAACGACGCCGACGACG
ACGCCGACGACGACGCGCAAGCCACGGTCTGTATCGAACGTGGATGCTCT
GTATGACGGTGGCGGCGGCGGCGGAAGGATCCAAACCGGTTCTCTCTCCC
GGCATGACACGTGAGTAAGGGTTGGTGTAATTTTGGACGACATTTTTGGG
TATCTGTGATGAGAGGCGAGGGGGAGGTGGGTTTCCGGCTATGTGTCCAG
GTTTTGCTTGCGTGCAGGAATTAGCTAGAGCATCATTTCCGTGGCGTTTC
AATTGTCGGGAAGCGGGGGGAGGGAAACGATTTGTGTCGAGCGCCTCGAA
GAAGCGTGCGAGTATTTTTTTGTGTAACTTTAGGCCTTCGGATGGCCGGA
AACGCGTGCTCGTTGTGGGCTACGTCTTGATCTAGTCGGCATGTTGTGAT
CAGATCAGATCAGATGCTCTGGTTTCACAGGCGTCGCTCCGGCTATGGCG
ATCGCAGAATGTTATGTGCCGTCATTCATCCGGCTACGCACATCATTCCC
CTCCCCTAGAGCGCGTGCATGTACCAGCACGTCTTGCGACCGTGCATTCC
CGCACCCATTCCTTACATTTTTTCGCTTCTCGCGAAATTCCCCTCCTCGC
GCCCGCCCCTCTCGCCGACGGGCCGCACAGCGCTGGCGATGGTCTACCGC
GAAAGGGCGTGGTTCAGACGCTGTCATCAGAGGGGTGGTCGTGGATCAAG
AAGGACGGCAGCGGCTCTCGAAAGAGCGGCAATCGCATTCCGTTCGCGAT
GGGGGACGTCGTGATTAAGGTGGGCATTCTCTTCATAGTGTATCACTCTG
TGTTGTCGATGAGGCTCGTTCTCTCTCTCTCTCTCTCTCTCTTTTCCCAT
CTCCTCCCCTCTGTACCGCTGTCCCTTTCTCTTTGTCTCTTCGTCTCTCC
CTCTCTTTTTATGCTGTGACCGTGCCGAGTTTTCTTTTTTCGACTTCGCG
TTCATGCGGCGGTTCAGTTCGGGTTCTGATGCTTTGATGAGGCTGTCTGT
AGTGTGGTTTGTCGGTTGTAGCAATGTAAATATTTTTTGAAAAGCGCATC
ATACGATGCATGTGTTTGGTGTGGTTTGTCGCAGGCTCGGAACAAGGACT
GACTGGTGTGGTCGTGACTCCATGCTGTTTACGTCACCATGCCCCGCCTC
CGACTCCCGCTAGGTATCCGTGCACCGCCGCACACCCACCCCTCTGCTCA
ACTTTATGCACACTAGCGTCACTTCCTCTTTTCTCGCACGTTTGCTTTAT
AAGCGTGTTGGTAGCATATAAAAACATACTCCCCCTCCAACGACATTTGT
CACGCTTCCTCCTCATAGAGCTCTCCTTCCTTGGTGCACAAAAGTGCCGG
CCTGATGTTACAATCATTATACTGTTCTTTTCGAAGTATGCCACCGTTTT
GCGGTGTGTTTATCCCTTTAAAACTCCTACTCCTCCTCCTCCTCGTGGAA
TACGTGACGTGCATTCCTTTTATTTCATATGTATGATCTATTTCCTCACA
CAACCCTCGTTTTTTTTGTCTCCAAGCCTACAGACAGTTCTGAGATGCTT
TGTTGGTTTGCAATGTATTATCCTCTTGCGCCAACCCGCACTACCAATCA
TGCGACAGGACGGAGAGCAGCAGCAACCCCTGCAGAAGGGCGACCTCGTA
GAGTACCGCGCCTGGAAAGACAGCGAGGGCAGATTGATGGCCGTAAGAGT
CGAGCGCGCCAAGGAGAGGCCGCGGCCAAAGGGAGGCGGCGGCAGCGGCG
GTGGTACCCGCGCCACCCAGGCACACTTCCGGTGAGAGAGGGTGCCGATG
GTAAAAAATGACAAGAACCCAACCAGGGTTGGGGGCCTACACGTGGACTG
AGGGGGGGATGGGGGCGGAGGTATTAAAGGGTGGAAGCGATCATGTGCAA
GAGATCAAAGTCTCCTGTGGTAAACGATTCGCTCCTCTCCTCTCTCTCTC
ACGTGGTGCACAGCAGTTGTGCACTCGCGTTGCTCTGCCTGTCTACGGGG
ATACCAAAACTACAAATAAACGCTGGCGTTGGGGTTATTTCGAACACGCC
GTGTTGTCCGATTCGTTGCAGTCGTTGTGGAGGACGATCTTGTCTCTTCG
GTCGTGCTATGAAGCCAATGGTGGCCTCGTCATGGGTAACGCCCCACAGA
CGACAGCTCAGCAGCACGACAGCACGCTACGTGTATGTCCTGCGCAACCC
TCACGGCGCGGTGGCTGTGTGTTTCTTCCCCCCCTCCACCTCCTCGCATG
TGACTACTGCACCCCTATTCCTTCTCCCTCCCTTTGCTCCCCGTCTCGAA
CGGGATGCGCGATCGATCAACAATATCATGGCATTAAAAAAAAAAAAACT
CCCCACCCCCTGCCACTCCCCCCCCACATGATGTGAATCCTGACCACCGC
CTTTGGTGCTGCTGCCCCATCGCACCGACAGGATGGCCGTCGGGCCCGAA
GAAGGAAAGAGCGGCTTTGCGGCGGGGAGAGGCCGACCGATCGTCGTGGA
ACCCCCACCACCCGGAAGCGGAAGCGGTGGCGGTGGCGGCGGCGGTGGCG
TGGGAGCGCCGGCAGGAGGGGTGGGTGAAGTCTTGCGCCGACCGCGCGGT
TCCAGCATGGGAGGGGCGGACAGCAAGGTGTTCGTCCCGTCCACGGCGGG
CGCGGCTGCGGCGGGCGCGGCGGGGGAGGCGACGCCGGTCGTCGTTGTAG
CGCCCTCGCCCCAGCAGTTTGAGGATGCCGACTAAATACAGCAGCAGGAA
TCGGATATAATTTCGTATCATATCATAGCATACTTGTATCATTGTGGGAT
TTCAAATAGTTGTCATTTTTTTCGATTTGCAAAGCGTGGTTTTGGAGGAA
AAGGAAACAAGAAGTAAGACGTTTTTCGAAGGGATGAAAAGTTTTGTGTC
CATGTTGACATGTCGTTTTATCGTGTGCGTTTTATTGAAGCTGAAATCTT
GGAAAATTTTGGTTTTAATTTAAAAGTGCAATATGAAGGAGTTGCAAGTA
TCACGGTGACTGTTGGTGACACCGCATATGATACGATAATATTGAATGTA
AGGTTGAATAAACAAACGGAAATTGAAAATACTCTTGTACAATGGACGGG
TCCATACATCTATACGCACTTGTGCCATAGTTGCACAGCGGCGATCATAA
CGGCAACCACCTCTGTGTCGTGTTTTTTTGGCCTGACAATGTTTGTTGTC
CGACTATTATTGTTGTTTTGCTTTTGTCTTGCGTTGTTTCGTGTGTGTCG
CGTTGCAACCTCTGATGTCACTGCGTGTGAGAACGTGGGGGGCGAGAACG
CGAAAGCTTGAGGGTTTTCGTTATTGTTGCAGGTTTTTTGCGGCTTGGTT
GGGCGCGAAACGTTCGTTGTTGTGGTCTGGATTGAGTGGGAAATTTTATC
TGGGTGGAGAAGTTTGGTTGGAGTCGTGTATTGGCTGTTCCTTATCTTGG
CTACGCGATACGCGTCCCGTGCTTCGTCACCCACTCTCGTCTTTCTGAAC
TGAATAGACAACTTTTCCCTATGATATCCCCTTTACCCCGAACTTGTCCC
TGGTGACCTTTTGGCAGACTTTTGGGGTGCGGGATCGGGTGGGTTTAGAG
AGACGCTCAAGACCACAGTTGGTTTCGTGTGTTTCGTTCATGGGAAAAAT
GAGAAAAAAACATCAAAGAAAAATACCCCCACTCGAGGAGGGTCTCCGTG
GGATGTGTCGAGTTCCTTATAGAGAGGGTTTACGTATGTTTGCAGAGTGA
TCCACCACGACTTGAACAGCCCGCACTCCAATTCATTGTGTGTGTACGGC
CATTGGTGGGCGTTGGTTTATGTCATGATAGGAGGGGGTGGGTCGAAAAC
TCTCTTGATACTCATGTGACGAAAATTGTTTTTTTTCTCATATCGCGAAC
ATTGAACAATGCCCCATATCGAAAGTCTTCGAGCTCTCATGTCTGAGCTC
TCGAGGGTCCCCTGTGTTGCGTATGATCGTACACTCGTGTTTCTTGCTTC
ACTGTGAGCTCTTTTGGTAACTTTTCTGGTGTCTGATCGGGCCGGCCGGA
CGTAGACCTCTCTCTCCGAAACGCAAACCTGGTTTGATGTAAAGTACAAA
AAGCACTTCAAACTAAGCACTCACATTTGCACGTCAAGTAGTCCACCGGC
TGCCAGAGTTTGTTTAGTTGTTCCTCTTTATTGGATGTATTCAGTGGTCC
GAGGCTGACCGAGGTCGATGAGCATCGCCTAACCAAAGTGAGCGTCGGTC
CTTCTGCGAGGGGGCTCTTTTCACCTTAGCTCTCTCGCGTAGGGACTGCA
CTTTTATTTGTTCGCTCTCGGTTTTTCCTCGTGCTCTGGCAGTAGCAGTA
TCAGCAGCGTGAGAGGGCCCGCTGTACCGTACTGTAAGTTTCGCACGGAG
CGTGTTTAGCACGTGGAAAAGGAGGGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig129:460659..471585+

>mRNA_P-littoralis_Contig129.113.2 ID=mRNA_P-littoralis_Contig129.113.2|Name=mRNA_P-littoralis_Contig129.113.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1956bp|location=Sequence derived from alignment at P-littoralis_Contig129:460659..471585+ (Pylaiella littoralis U1_48)
ATGGACATGGGAGCTGAGACCGTCGCACCTGCTTCTCCTGAGGATGTGGT
TGATTCCCCTTCCGATCGTCCCTCAAAGGAGCCGGAGAAGCCAGAGAGCA
CGCCTGTGGCCGTCGAGGCCGTGGCTGCACCGGCGGCCGAGGAGGGGTCT
TCGTCCAGCGTCGTCGACAGTGGGGACGATGGGTCGGTGTCGCCCCAACC
CGGCGCCTCCGCTCCTGCGGAAGTGAGCTCCGACGACACGAGCGGAAAAG
AGGACACTCCCGAAGGAGAAATAGCGGCAGCGGCAGCGGCAGCGGCAGCG
GCAGTGCCCGTGGAGGAGCTATCGGACGAGACCAAAGCGGCCCTGGTGAA
GCAGGTGGAGTTTTACTTCAGTGACGAGAACCTGCCCACGGACGCCTTCA
TGAAGAAGCGAGTCAAGGCCGGAGGAGCACAAGGCTGGGTGCCGCTGAAG
GTGATATGTAGCTTCCCGAAGGTGAAGAAGCTGTCGAAGGACATTCGCGC
GGTCGCGCAAGCCCTCAAGGGATCTGAGCTGCTTGTCGTGACGAAAGCGA
CCCGCGTGCGGCGCAAGACGCCGTTCAAGTTCCCGGATAAGGACGGCATG
TCTGACGTCATCGCCCGGACGGTCGTGGCGGTGAACATCCCTGCTGAATC
GACGGTGGAGTCTCTGACGCCATTCTTTTCGGCCTGCGGAGTGGCCGAAG
CGGTGCGCCTGATCCACAAGAACAAGCAGGACAGCAGGGGTTCGCAAATC
CAGGCGCCGGTTGGCCCGAACCGCGACTTGTACGCGACCTGCCAGTTCTC
CACCCTGGAAGAGGCCATCAGGGCTGTGAACGAGCTCACCGACAGAAACA
GTTGGCGGGGGGGGCTGCGAGTGTCGCTAGCTAACGGAGTGACGGTAGAA
AAGGCGTTGGCCAAGCTTAAGGCGGCGGCCGGTAAAAAGGCGAGGCAGGA
ACAGAAGGACAGGGTCAACTCGCGATCGCCTTTCGAGCGCGCCGAACGCC
GCGGAAACGCCGACGGCAACGTTCGGGATGGGCAGATGCGCTCTCGGTCC
CTGACGGAGCTGGAGCTGGAGAGCACGACGGGGGCGAACGACGGGGCCGG
GAGGCGAGGCAGAGAACAGCGCTCGCCCCCCCCTGATCGTCGAATCCCGC
GAGAGGATGAAGGCAGCAGCGGGGACGGGGTGGAGGGGACGCCGACAAGG
ACGACGACGCCGACAACGACGCCGACGACGACGCCGACGACGACGCGCAA
GCCACGGTCTGTATCGAACGTGGATGCTCTGTATGACGGTGGCGGCGGCG
GCGGAAGGATCCAAACCGGTTCTCTCTCCCGGCATGACACCGCTGGCGAT
GGTCTACCGCGAAAGGGCGTGGTTCAGACGCTGTCATCAGAGGGGTGGTC
GTGGATCAAGAAGGACGGCAGCGGCTCTCGAAAGAGCGGCAATCGCATTC
CGTTCGCGATGGGGGACGTCGTGATTAAGGACGGAGAGCAGCAGCAACCC
CTGCAGAAGGGCGACCTCGTAGAGTACCGCGCCTGGAAAGACAGCGAGGG
CAGATTGATGGCCGTAAGAGTCGAGCGCGCCAAGGAGAGGCCGCGGCCAA
AGGGAGGCGGCGGCAGCGGCGGTGGTACCCGCGCCACCCAGGCACACTTC
CGGATGGCCGTCGGGCCCGAAGAAGGAAAGAGCGGCTTTGCGGCGGGGAG
AGGCCGACCGATCGTCGTGGAACCCCCACCACCCGGAAGCGGAAGCGGTG
GCGGTGGCGGCGGCGGTGGCGTGGGAGCGCCGGCAGGAGGGGTGGGTGAA
GTCTTGCGCCGACCGCGCGGTTCCAGCATGGGAGGGGCGGACAGCAAGGT
GTTCGTCCCGTCCACGGCGGGCGCGGCTGCGGCGGGCGCGGCGGGGGAGG
CGACGCCGGTCGTCGTTGTAGCGCCCTCGCCCCAGCAGTTTGAGGATGCC
GACTAA
back to top