prot_P-littoralis_Contig129.111.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig129.111.1
Unique Name	prot_P-littoralis_Contig129.111.1
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	266

Homology

[Close]

BLAST of mRNA_P-littoralis_Contig129.111.1 vs. uniprot
Match: A0A6H5JT74_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JT74_9PHAE)

HSP 1 Score: 364 bits (935), Expect = 7.870e-125
Identity = 196/257 (76.26%), Postives = 219/257 (85.21%), Query Frame = 0

Query:    1 MATTRRRPASIIVSSLLLTSGFTLSQGFCFGGGALCSSNARPRCRGATSAERRATQQ---GGGLTMRRGLSYKGKNGPGLTNVRRIVTTRERISQSEEPCKVMISNLDYTLTEQDVEEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIENLNGKELKGRVVELKPAITTREKKMKKALREWEERCLEEDRRVAQGYPRRELPLPAKKKMADFGITVDEFLAMVGRTNSRSAKKPPTAAEYNEEVGHD 254
            M T RRR  +I+ S+L   +G T  QGFCF   AL  SN R  C GAT AER+ATQQ   GGGLTMRRGLSYKGKNGPGLTN+ R+VTTR+R+ +SEEPCKVMISNLDY+LTE DV EFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIE LNGKELKGRVVELKPAIT+REK+ K+ALR+WE+RCLEEDRRV QGYPRRE+PLP KKKMADFG+TVDEFL +VGRTNSR+AKK P   +Y EE+G+D
Sbjct:    1 MPTVRRRSFAIMASALCGAAGLTRVQGFCFVP-ALTGSNTR--CHGAT-AERQATQQAQQGGGLTMRRGLSYKGKNGPGLTNIGRVVTTRKRVLESEEPCKVMISNLDYSLTENDVAEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIETLNGKELKGRVVELKPAITSREKRRKQALRDWEQRCLEEDRRVEQGYPRREVPLPEKKKMADFGVTVDEFLEIVGRTNSRTAKKQP---KYAEEIGYD 250

[Close]

BLAST of mRNA_P-littoralis_Contig129.111.1 vs. uniprot
Match: W7TTT9_9STRA (Rnp-1 like rna-binding protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTT9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.500e-15
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = 0

Query:   83 IVTTRERISQSEEPCKVMISNLDYTLTEQDVEEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIENLNGKELKGRVVELKPAI 174
            I + RE I     P ++M+SNL +  + +++E F S AG V  VK++       SKGYGFV F +PL+AT A+E L+G EL GR ++++PAI
Sbjct:   52 INSMRENIEGEPNPTQIMVSNLPFDTSTEELEAFASQAGQVVNVKIILDRETGRSKGYGFVLFTEPLSATYALERLDGMELGGRPLKIRPAI 143

[Close]

BLAST of mRNA_P-littoralis_Contig129.111.1 vs. uniprot
Match: A0A7S2V4S3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4S3_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.660e-11
Identity = 35/77 (45.45%), Postives = 49/77 (63.64%), Query Frame = 0

Query:   97 CKVMISNLDYTLTEQDVEEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIENLNGKELKGRVVELKPA 173
            CKV +SN  YT TE+++ E+CS AG V  VK++K  + K S+GYG+V++     AT AI  LN  +L GR V +  A
Sbjct:   80 CKVHVSNFPYTTTEEELREWCSQAGEVFAVKIIKNQWTKKSQGYGYVEYTISPYATAAINFLNETQLGGRTVYIAEA 156

[Close]

BLAST of mRNA_P-littoralis_Contig129.111.1 vs. uniprot
Match: UPI0019E9B91D (RNA-binding protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019E9B91D)

HSP 1 Score: 65.1 bits (157), Expect = 6.410e-10
Identity = 30/75 (40.00%), Postives = 47/75 (62.67%), Query Frame = 0

Query:   99 VMISNLDYTLTEQDVEEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIENLNGKELKGRVVELKPA 173
            + + NL Y +TE+D+++     G V  + ++K  Y+  SKG+GFV+      A  AIE LNGKELKGR++++  A
Sbjct:    3 IYVGNLSYEVTEEDLKQAFGAFGQVESINIIKDKYSGESKGFGFVEMPAKAEAQSAIEGLNGKELKGRMLKVSEA 77

[Close]

BLAST of mRNA_P-littoralis_Contig129.111.1 vs. uniprot
Match: B8LC97_THAPS (RNA binding protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LC97_THAPS)

HSP 1 Score: 65.1 bits (157), Expect = 8.780e-10
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 0

Query:   95 EPCKVMISNLDYTLTEQDVEEFCSTA-GAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIENLN---GKELKGRVVEL 170
            +P KV I NL +  TE+DV +  +T  G +  VK+V+ W +  SKGYGF+ F +P+ AT A++++N   G  +KGR + L
Sbjct:   13 DPNKVFIGNLPFDATEEDVNQLFATHWGRIESVKIVRDWKSGKSKGYGFIQFYEPMVATSAMKSVNEGKGLRIKGRPIRL 92

[Close]

BLAST of mRNA_P-littoralis_Contig129.111.1 vs. uniprot
Match: A0A661LRS4_9DELT (RNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661LRS4_9DELT)

HSP 1 Score: 64.3 bits (155), Expect = 1.090e-9
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0

Query:   99 VMISNLDYTLTEQDVEEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIENLNGKELKGRVVELKPA 173
            + + NL Y +TE+D+ +    +G V  V+++   Y+  SKG+GFV+      A  AI+ LNGKELKGRV+ L  A
Sbjct:    3 IYVGNLSYEVTEEDLRQAFEQSGQVESVRIIMDKYSGRSKGFGFVEMPSNHEAQAAIKGLNGKELKGRVLNLNEA 77

[Close]

BLAST of mRNA_P-littoralis_Contig129.111.1 vs. uniprot
Match: A0A8J6P332_9DELT (RNA-binding protein n=1 Tax=Candidatus Desulfatibia vada TaxID=2841696 RepID=A0A8J6P332_9DELT)

HSP 1 Score: 64.7 bits (156), Expect = 1.160e-9
Identity = 33/75 (44.00%), Postives = 45/75 (60.00%), Query Frame = 0

Query:   99 VMISNLDYTLTEQDVEEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIENLNGKELKGRVVELKPA 173
            + + NL Y +TE+D++E     G V  VK++K  Y   SKG+GFV+      A  AIE LNGKELKGR + +  A
Sbjct:    3 IYVGNLSYEVTEEDLKEAFEVFGEVDTVKVIKDNYTGRSKGFGFVEMSVKAEAQSAIEGLNGKELKGRSLNVNEA 77

[Close]

BLAST of mRNA_P-littoralis_Contig129.111.1 vs. uniprot
Match: A0A2H0RA58_9BACT (RNA-binding protein n=1 Tax=candidate division WWE3 bacterium CG10_big_fil_rev_8_21_14_0_10_32_10 TaxID=1975090 RepID=A0A2H0RA58_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.940e-9
Identity = 31/71 (43.66%), Postives = 45/71 (63.38%), Query Frame = 0

Query:   98 KVMISNLDYTLTEQDVEEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIENLNGKELKGRVV 168
            K+ + NLDYTLT+ D+E+  S  G V   K++    ++ SKG+GFV F++   A  AI+ LN KEL GR +
Sbjct:    4 KLFVGNLDYTLTDADLEKAFSKFGTVLEAKVITDMQSRRSKGFGFVTFEKAEDAAEAIKELNEKELNGRKI 74

[Close]

BLAST of mRNA_P-littoralis_Contig129.111.1 vs. uniprot
Match: A0A3C1A1Y7_9CHLR (RNA-binding protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3C1A1Y7_9CHLR)

HSP 1 Score: 63.2 bits (152), Expect = 2.620e-9
Identity = 37/91 (40.66%), Postives = 54/91 (59.34%), Query Frame = 0

Query:   98 KVMISNLDYTLTEQDVEEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIENLNGKELKGRVVELKPAITTREKKMKKALREW 188
            K+ + NLDYT+TEQD+E   S  G V    +VK  Y+  SKG+ FV+F     A  A + LNG++LKGR + +  A   RE+K  +  R++
Sbjct:    4 KLYVGNLDYTVTEQDLETLFSEHGEVLSTTVVKDRYSGRSKGFAFVEFANNEDAQKAKQALNGQDLKGRALRVDDA---REQKRDRGPRDY 91

[Close]

BLAST of mRNA_P-littoralis_Contig129.111.1 vs. uniprot
Match: A0A661LIA6_9DELT (RNA-binding protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661LIA6_9DELT)

HSP 1 Score: 63.2 bits (152), Expect = 2.620e-9
Identity = 32/75 (42.67%), Postives = 45/75 (60.00%), Query Frame = 0

Query:   99 VMISNLDYTLTEQDVEEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLTATIAIENLNGKELKGRVVELKPA 173
            + I +L Y  TE+D+++     G V  VK++K  Y+  SKG+GFV+      A  AIE LNGKELKGR + +  A
Sbjct:    3 IYIGSLSYKATEEDLKQAFEAFGQVESVKIIKDNYSGQSKGFGFVEMPDKAEAQSAIEGLNGKELKGRRLNVNEA 77

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig129.111.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig129.111.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JT74_9PHAE	7.870e-125	76.26	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
W7TTT9_9STRA	6.500e-15	43.48	Rnp-1 like rna-binding protein n=2 Tax=Monodopsida...	[more]
A0A7S2V4S3_9STRA	5.660e-11	45.45	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
UPI0019E9B91D	6.410e-10	40.00	RNA-binding protein n=1 Tax=Proteobacteria bacteri...	[more]
B8LC97_THAPS	8.780e-10	41.25	RNA binding protein (Fragment) n=1 Tax=Thalassiosi...	[more]
A0A661LRS4_9DELT	1.090e-9	41.33	RNA-binding protein n=1 Tax=Deltaproteobacteria ba...	[more]
A0A8J6P332_9DELT	1.160e-9	44.00	RNA-binding protein n=1 Tax=Candidatus Desulfatibi...	[more]
A0A2H0RA58_9BACT	1.940e-9	43.66	RNA-binding protein n=1 Tax=candidate division WWE...	[more]
A0A3C1A1Y7_9CHLR	2.620e-9	40.66	RNA-binding protein n=1 Tax=Chloroflexi bacterium ...	[more]
A0A661LIA6_9DELT	2.620e-9	42.67	RNA-binding protein n=1 Tax=Deltaproteobacteria ba...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 98..171 e-value: 1.5E-17 score: 74.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 99..168 e-value: 1.8E-17 score: 63.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 97..175 score: 15.76675
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 45..187 e-value: 1.6E-22 score: 82.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 232..265
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..265
None	No IPR available	PANTHER	PTHR23003	RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN	coord: 84..227
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 94..178

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig129	contig	P-littoralis_Contig129:456097..460479 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig129.111.1	mRNA_P-littoralis_Contig129.111.1	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig129 455356..460543 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig129.111.1 ID=prot_P-littoralis_Contig129.111.1|Name=mRNA_P-littoralis_Contig129.111.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=266bp
MATTRRRPASIIVSSLLLTSGFTLSQGFCFGGGALCSSNARPRCRGATSA
ERRATQQGGGLTMRRGLSYKGKNGPGLTNVRRIVTTRERISQSEEPCKVM
ISNLDYTLTEQDVEEFCSTAGAVAGVKLVKKWYAKTSKGYGFVDFDQPLT
ATIAIENLNGKELKGRVVELKPAITTREKKMKKALREWEERCLEEDRRVA
QGYPRRELPLPAKKKMADFGITVDEFLAMVGRTNSRSAKKPPTAAEYNEE
VGHDDDDGDDDEDLF*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf