mRNA_P-littoralis_Contig129.89.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig129.89.1
Unique NamemRNA_P-littoralis_Contig129.89.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig129.89.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 1.100e-93
Identity = 147/212 (69.34%), Postives = 178/212 (83.96%), Query Frame = 2
Query:  338 YSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDNP 973
            +SGNFGRSEYAR+ GLDK+AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N R+  QDV+E+ FGHMR GLGSHRNPTA QAKER ARGD+ R LHG  RAN+NRNAR+G+D++ASGYRA +MLP+ EGERS  +R  + ++  AVL P YIS   P
Sbjct:  548 WSGNFGRSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFINQRNCGQDVIEHCFGHMRQGLGSHRNPTAAQAKERGARGDILRGLHGPCRANYNRNARKGRDFVASGYRAEVMLPVGEGERSVRIRARTKDSDEAVLSPWYISVAAP 759          
BLAST of mRNA_P-littoralis_Contig129.89.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 247 bits (630), Expect = 6.370e-78
Identity = 135/217 (62.21%), Postives = 159/217 (73.27%), Query Frame = 2
Query:  323 MCMCIYSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDNP 973
            +C+ I++GNFGRS+YARK GLDK  GY  SADDSKLE LMDILRFF++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+  L D P ++N R   QD+VE+R+GHM   LGSH NPTA QAKERAA+ DL RSLHG SRANH   AR+G+D+IASG R RIMLP      S   R   ++  A  L  RY+S D P
Sbjct:   30 VCVRIHAGNFGRSDYARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFINLRCIGQDIVEHRYGHMCQCLGSHCNPTAAQAKERAAQEDLQRSLHGISRANH---ARKGEDFIASGIRGRIMLP------SDRRRAVCYD--AGALEERYLSCDVP 233          
BLAST of mRNA_P-littoralis_Contig129.89.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.500e-52
Identity = 103/217 (47.47%), Postives = 144/217 (66.36%), Query Frame = 2
Query:  335 IYSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEK---TTLGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLR-DTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRN--ARRGQDYIASG--YRARIMLPITEGERSATMRPSSWNTPAAVLFPRYI 958
            I++GN+GRS+  RK G  K  G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++  L  +  R+++PR+  QD+ E+RF H+R  LG+HRNPTA +AK+R+A GDL R+ +G+ R N +RN  AR G D+   G   +  I+L +T+ E    +R    NTPA VL PRY+
Sbjct:   62 IFNGNYGRSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEHRFSHIRAALGTHRNPTAREAKKRSAVGDLCRATNGKRRRNASRNPNARSGGDFEEHGDSEKKAIILAVTKVETGKEVRAWCRNTPAEVLCPRYM 278          
BLAST of mRNA_P-littoralis_Contig129.89.1 vs. uniprot
Match: A0A6H5JS87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS87_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 1.230e-43
Identity = 97/196 (49.49%), Postives = 114/196 (58.16%), Query Frame = 2
Query:  398 GYITSADDSKLEELMDILRFFE----KWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDNP 973
            GYI SADDSKLEELMDILRFF+    +WR +    T  G  T         S    R S  G                                  D+VE+R+ HMR  LGS+ NPTA QAKERAARGDL RSLHG SRANHN+N R+G+++IASG R RIMLP+T+ ERSATMR  S N+ +AV+FPRYIS   P
Sbjct:    3 GYIRSADDSKLEELMDILRFFDDGGPRWRLDRRWATAPGRRT---------SSPTTRGSTSG---------------------------------PDIVEHRYAHMRQSLGSNSNPTAAQAKERAARGDLYRSLHGVSRANHNKNERKGEEFIASGIRGRIMLPVTDAERSATMRAPSRNSVSAVMFPRYISIHKP 156          
BLAST of mRNA_P-littoralis_Contig129.89.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 153 bits (386), Expect = 1.020e-37
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 2
Query:  347 NFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVEN 688
            NFGRS+YARK GLDK   YI SADDSKLEE+MDIL  F++WR +LE + TLGD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+  L D P ++N R+  Q   +N
Sbjct:  428 NFGRSDYARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFINLRYIGQASQKN 541          
BLAST of mRNA_P-littoralis_Contig129.89.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 150 bits (380), Expect = 3.380e-37
Identity = 83/193 (43.01%), Postives = 115/193 (59.59%), Query Frame = 2
Query:  335 IYSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDY-IASGYRARIMLPITEGERSATMR 910
            I +G +G +E  RK+G +K+ GYIT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+       L    R++ PR   QD++E+RF H+R G G+H+NPTA QA E A  GD  R  HG  R N +R+A  G  + +      R   P    ER+  +R
Sbjct:  471 IMNGVYGLNEVERKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDED------LVSGGRFLYPRMFSQDILEHRFAHIRSGRGTHKNPTAMQAIEAARAGDTARMFHGTRRRNSSRSA--GMAFQLEDSQGVRAAFPANASERAQVVR 653          
BLAST of mRNA_P-littoralis_Contig129.89.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 4.240e-37
Identity = 70/101 (69.31%), Postives = 82/101 (81.19%), Query Frame = 2
Query:  671 QDVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDNP 973
            +D VE+RFGH R GLGSHRNPTATQAKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+FPRY+S   P
Sbjct:   66 RDPVEHRFGHTRQGLGSHRNPTATQAKERAARGDLNRGLQGGSRANHNRTSRKGNDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFPRYLSVVKP 166          
BLAST of mRNA_P-littoralis_Contig129.89.1 vs. uniprot
Match: A0A6H5KB63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB63_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 6.390e-34
Identity = 65/91 (71.43%), Postives = 73/91 (80.22%), Query Frame = 2
Query:  701 MRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDNP 973
            MR  LGSH NP A QAKER ARGDL RSLHG SRANHN+NAR+G+D+IASG R RIMLP+T+ ERSATMR  S N  +AV+FPRYIS D P
Sbjct:    1 MRQSLGSHSNPIAAQAKERTARGDLQRSLHGVSRANHNKNARKGEDFIASGIRGRIMLPVTDAERSATMRAPSRNPVSAVMFPRYISIDKP 91          
BLAST of mRNA_P-littoralis_Contig129.89.1 vs. uniprot
Match: A0A6H5K5X1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X1_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.740e-33
Identity = 67/101 (66.34%), Postives = 81/101 (80.20%), Query Frame = 2
Query:  674 DVVENRFGHMRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDNPY 976
            D+ E+R+GHM  GLGSH NPT  +AKERA RGDL RSLHG SRA HN+NAR+G+D+IASG R RI+LP+T+ ERSATMR  S N  +AV+FPRYIS D P+
Sbjct:  530 DIEEHRYGHMHQGLGSHSNPTCAEAKERAERGDLQRSLHGVSRAKHNQNARKGEDFIASGIRGRIILPVTDAERSATMRAPSKNPASAVMFPRYISIDKPH 630          
BLAST of mRNA_P-littoralis_Contig129.89.1 vs. uniprot
Match: A0A6H5K630_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K630_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 2.090e-31
Identity = 63/91 (69.23%), Postives = 73/91 (80.22%), Query Frame = 2
Query:  701 MRDGLGSHRNPTATQAKERAARGDLNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSWNTPAAVLFPRYISYDNP 973
            MR GLGSHRNPTATQAKERAARGDLNR L G SRANHNR +R+G D+IASG R +I+LP+T+ ERSATMR  S N  +AV+F RY+S   P
Sbjct:    1 MRQGLGSHRNPTATQAKERAARGDLNRGLRGGSRANHNRTSRKGSDFIASGVRGQIILPVTDEERSATMRAPSRNPASAVMFSRYLSVVKP 91          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig129.89.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JR14_9PHAE1.100e-9369.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTX6_9PHAE6.370e-7862.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5I6_9PHAE1.500e-5247.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS87_9PHAE1.230e-4349.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRH8_9PHAE1.020e-3763.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7Z3_9PHAE3.380e-3743.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2C2_9PHAE4.240e-3769.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB63_9PHAE6.390e-3471.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X1_9PHAE3.740e-3366.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K630_9PHAE2.090e-3169.23Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig129contigP-littoralis_Contig129:326098..327230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size985
Hectar predicted targeting categoryother localisation
Exons2
Cds size663
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789576.2650652-UTR-P-littoralis_Contig129:326097..3264191680789576.2650652-UTR-P-littoralis_Contig129:326097..326419Pylaiella littoralis U1_48UTRP-littoralis_Contig129 326098..326419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789576.2746105-CDS-P-littoralis_Contig129:326419..3267701680789576.2746105-CDS-P-littoralis_Contig129:326419..326770Pylaiella littoralis U1_48CDSP-littoralis_Contig129 326420..326770 +
1680789576.2859845-CDS-P-littoralis_Contig129:326918..3272301680789576.2859845-CDS-P-littoralis_Contig129:326918..327230Pylaiella littoralis U1_48CDSP-littoralis_Contig129 326919..327230 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig129.89.1prot_P-littoralis_Contig129.89.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig129 326420..327230 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig129.89.1

>prot_P-littoralis_Contig129.89.1 ID=prot_P-littoralis_Contig129.89.1|Name=mRNA_P-littoralis_Contig129.89.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=221bp
MCMCIYSGNFGRSEYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWR
CNLEEKTTLGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKV
SRLRDTPRYVNPRHHCQDVVENRFGHMRDGLGSHRNPTATQAKERAARGD
LNRSLHGRSRANHNRNARRGQDYIASGYRARIMLPITEGERSATMRPSSW
NTPAAVLFPRYISYDNPYTR*
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mRNA from alignment at P-littoralis_Contig129:326098..327230+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig129.89.1 ID=mRNA_P-littoralis_Contig129.89.1|Name=mRNA_P-littoralis_Contig129.89.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1133bp|location=Sequence derived from alignment at P-littoralis_Contig129:326098..327230+ (Pylaiella littoralis U1_48)
AATGGCTGCAACGGATAGATTTCGTGACATATTATGCGGATGCCGGGGTG CGGAGTGCAGGATGGGGGCTCAGTGGTGAGTTTTGGGGCCCCGTGGAACG ATTTTTGCAACAACTGATGCAATTAGCCAAAAACATAAATAACTCTGCAG CTATGTATCGACATATCTCGACGAGGCGATCACTAATATTGTTGTTTCAC GTCCCAACGCGATTGAACAAAAAGGAGAGCACGGACCTACTTGTTTTTTT TATATATATATTTCCTCGCGCAATGTACACACTCTGTGCGCGTCGTTTGT CTCTTCCCACACGGCCCCATGTATGTGTATGTGTATATATTCAGGAAACT TCGGCCGCTCGGAGTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGC TACATTACATCGGCCGACGACTCCAAACTAGAAGAACTCATGGACATCTT GCGTTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGCTGG GCGACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGAC ATCCGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGA GGATGATTCGAGGTTCAAGGTCTCCCGCCTGCGCGACACGCCCCGCTACG TCAACCCGCGGCACCATTGCCAGGTATCATGTGCACACAGCGTACTATGT TGTGGCTGATTCTGCCTGTGGATCTCGTGTGCGTCCGGTCCGACTCCGAG GAGCATTTTCTGAAATTGCGTCGACCTCTcCCCCCCCCTATTTTCCACCG CTTCGCCTTGTAACCCCACAGGATGTCGTGGAGAACCGCTTCGGGCACAT GCGCGACGGCCTTGGGTCGCACAGAAACCCGACGGCTACGCAAGCGAAGG AGAGGGCAGCACGGGGGGACCTGAATCGTAGTCTGCACGGGCGTTCCCGC GCAAACCACAATCGGAATGCGCGGAGAGGACAGGACTACATCGCGTCCGG ATACCGGGCACGGATCATGCTCCCAATAACGGAAGGAGAGCGGTCTGCTA CCATGCGGCCTAGCTCCTGGAACACTCCCGCAGCTGTTCTGTTCCCGCGG TACATCAGCTACGACAACCCATACACTCGTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig129:326098..327230+

>mRNA_P-littoralis_Contig129.89.1 ID=mRNA_P-littoralis_Contig129.89.1|Name=mRNA_P-littoralis_Contig129.89.1|organism=Pylaiella littoralis U1_48|type=CDS|length=663bp|location=Sequence derived from alignment at P-littoralis_Contig129:326098..327230+ (Pylaiella littoralis U1_48)
ATGTGTATGTGTATATATTCAGGAAACTTCGGCCGCTCGGAGTACGCGCG
CAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATCGGCCGACGACT
CCAAACTAGAAGAACTCATGGACATCTTGCGTTTTTTCGAGAAGTGGCGG
TGCAATCTGGAGGAGAAGACGACGCTGGGCGACGTCACCTGGAAGAAGCA
CTTCATCACGGAGTACTCGTGGACCGACATCCGGGTGTCCATCCTTGGCT
TCGTCAGTATGTGCCGATACTTGTTCGAGGATGATTCGAGGTTCAAGGTC
TCCCGCCTGCGCGACACGCCCCGCTACGTCAACCCGCGGCACCATTGCCA
GGATGTCGTGGAGAACCGCTTCGGGCACATGCGCGACGGCCTTGGGTCGC
ACAGAAACCCGACGGCTACGCAAGCGAAGGAGAGGGCAGCACGGGGGGAC
CTGAATCGTAGTCTGCACGGGCGTTCCCGCGCAAACCACAATCGGAATGC
GCGGAGAGGACAGGACTACATCGCGTCCGGATACCGGGCACGGATCATGC
TCCCAATAACGGAAGGAGAGCGGTCTGCTACCATGCGGCCTAGCTCCTGG
AACACTCCCGCAGCTGTTCTGTTCCCGCGGTACATCAGCTACGACAACCC
ATACACTCGTTAA
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