mRNA_P-littoralis_Contig1.367.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.367.1
Unique NamemRNA_P-littoralis_Contig1.367.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1606545..1607212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size668
Hectar predicted targeting categoryother localisation
Exons1
Cds size411
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789309.308753-UTR-P-littoralis_Contig1:1606544..16066021680789309.308753-UTR-P-littoralis_Contig1:1606544..1606602Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1606545..1606602 +
1680789309.3328767-UTR-P-littoralis_Contig1:1607013..16072121680789309.3328767-UTR-P-littoralis_Contig1:1607013..1607212Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1607014..1607212 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789309.3228884-CDS-P-littoralis_Contig1:1606602..16070131680789309.3228884-CDS-P-littoralis_Contig1:1606602..1607013Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1606603..1607013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.367.1prot_P-littoralis_Contig1.367.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1606603..1607013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.367.1

>prot_P-littoralis_Contig1.367.1 ID=prot_P-littoralis_Contig1.367.1|Name=mRNA_P-littoralis_Contig1.367.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=137bp
MAELAELTVSFLSLGPIAPSGDRTRLSSAARSAASSTSRGSSIRLTSEAR
RTLSSSSRMKSARGNGHTGWQRQQWQDLEGPLEGSQGNESDDRPHPQPHR
LSHPKFAPTKPFGSSSVEGRSPKQPAAAPRGPSELE*
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mRNA from alignment at P-littoralis_Contig1:1606545..1607212+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.367.1 ID=mRNA_P-littoralis_Contig1.367.1|Name=mRNA_P-littoralis_Contig1.367.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=668bp|location=Sequence derived from alignment at P-littoralis_Contig1:1606545..1607212+ (Pylaiella littoralis U1_48)
GGAGGCGGCAACGGCGGAGGAAAAGGCCGAAGAAGACGAAGACATTGCAG
CGGCATCAATGGCAGAGCTGGCGGAGCTCACCGTTTCCTTCCTTTCGCTG
GGTCCGATCGCTCCCAGCGGCGACAGGACGCGTCTCAGTAGCGCCGCGAG
GAGCGCCGCGAGCAGCACTTCCCGCGGCAGCAGCATTCGTCTCACTAGCG
AGGCGAGGAGGACACTGAGCAGCAGCAGCAGGATGAAAAGTGCGAGAGGA
AACGGGCACACAGGGTGGCAGCGCCAGCAGTGGCAGGACCTAGAGGGGCC
GCTGGAAGGCAGCCAAGGCAACGAGAGCGATGACCGGCCGCATCCGCAGC
CCCATCGGCTCTCGCACCCGAAGTTCGCACCGACAAAGCCTTTTGGCAGC
TCGTCGGTAGAAGGTCGGTCGCCGAAACAGCCAGCAGCCGCACCGCGCGG
GCCCAGCGAGCTGGAATAAAATATCATAGTGAAACAAACATCGCACTATT
TTCGGCGATCGGCCACATGAGACGTGCCGTCTGTGGTACGGCGCGGTAAC
GTGAAAAACATGTGGAATTTTGGTGTGTTTCAGTAAATGTTTTCATTTGC
TGACAATAATGTAGGACGGAGGAGCTGCCTGTGTCCCCGTGAAGACGTGC
GGTGCGGTGTTTTGGTGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1606545..1607212+

>mRNA_P-littoralis_Contig1.367.1 ID=mRNA_P-littoralis_Contig1.367.1|Name=mRNA_P-littoralis_Contig1.367.1|organism=Pylaiella littoralis U1_48|type=CDS|length=411bp|location=Sequence derived from alignment at P-littoralis_Contig1:1606545..1607212+ (Pylaiella littoralis U1_48)
ATGGCAGAGCTGGCGGAGCTCACCGTTTCCTTCCTTTCGCTGGGTCCGAT
CGCTCCCAGCGGCGACAGGACGCGTCTCAGTAGCGCCGCGAGGAGCGCCG
CGAGCAGCACTTCCCGCGGCAGCAGCATTCGTCTCACTAGCGAGGCGAGG
AGGACACTGAGCAGCAGCAGCAGGATGAAAAGTGCGAGAGGAAACGGGCA
CACAGGGTGGCAGCGCCAGCAGTGGCAGGACCTAGAGGGGCCGCTGGAAG
GCAGCCAAGGCAACGAGAGCGATGACCGGCCGCATCCGCAGCCCCATCGG
CTCTCGCACCCGAAGTTCGCACCGACAAAGCCTTTTGGCAGCTCGTCGGT
AGAAGGTCGGTCGCCGAAACAGCCAGCAGCCGCACCGCGCGGGCCCAGCG
AGCTGGAATAA
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