mRNA_P-littoralis_Contig129.123.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig129.123.1
Unique NamemRNA_P-littoralis_Contig129.123.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig129.123.1 vs. uniprot
Match: A0A6H5KG74_9PHAE (DUF4455 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG74_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.880e-52
Identity = 221/519 (42.58%), Postives = 240/519 (46.24%), Query Frame = 1 
Query:   31 MFECKEDFRLADEDREGAVKTSTGRVRMAADEDELEESFAKVMALLDEVEGSYREYHKISFNAAAVHPAEAAQEAQRMRAAVCSLVGLHPPSPQSPGAAESDDDRGRRAEPGDADGA-GEKVEAGQDVAKEENKDDDGPASTFEE--------GQEEASLSSGAAL----DNGGSADNEPKFFTYSV---PKGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGK*DRQRHRRGERGAXXXXXXXXXXXXXXXXXXXXXXXXXXTVGR*QQKTRIGGRKE----------------------EKGEGGSYSLRSR-------------------------------------------------------YRCRCDGEPSEVLEGEVRPPRGRRPASAGAREGAGRSGRVSRQEGPAVPRA--EVKREVERHRRFRKEEEERHRAEERLVPRDPTGEAVLEELSMPVEEASILFSSLRDDLMARTEAKAATRGAAANSDCLEAQEALTEELEERLRKH 1302
            MFECKEDFRLADED+E  VKTST RVRMAADE+ELE SFA+VM LLD+VE SYREYHK +F AAAVHPAEAAQEA+R+RA +CSLVGLHPP P      E+    GR     D DG  GE+ E      +         AS  EE        G EEA  S    +      GG  D       Y V   P  V                                 D         GA  XXXXXXXXXXXXXXXXXXXXXXXX              K                       EKGE G      R                                                               P EV   E+ P                        E P+V  A  EVKREVERHR FRKEE  R RAEERLVPRDPTGEAV+EELSMPVEEAS L SSLRDDL++RTE +AA R AAA S CLEAQE L+EELEERLRKH
Sbjct:    1 MFECKEDFRLADEDQEDDVKTSTSRVRMAADENELETSFARVMDLLDQVEKSYREYHKTAFTAAAVHPAEAAQEAERVRATICSLVGLHPPRPAM---TETPHAEGR-----DGDGRIGERTEEAVTEDEXXXXXXXXRASALEEEGAAPASDGPEEADNSDMKPVIYRAPGGGGGDASAGAIDYVVDRTPHEVAQDLLSFSVDEEGAEGDETGSATDEENEDHDGLDTTPQGEEGHGAATXXXXXXXXXXXXXXXXXXXXXXXXXPSMSAADVAAAAIKNLPRYWRGNFVPLEEEDLQALELEKGEEGLEEYFDRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPEEVAALEMSP------------------------EPPSVLEAYEEVKREVERHREFRKEEAARRRAEERLVPRDPTGEAVMEELSMPVEEASALLSSLRDDLVSRTETRAAVRVAAAESACLEAQEYLSEELEERLRKH 487
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BLAST of mRNA_P-littoralis_Contig129.123.1 vs. uniprot
Match: D7FNW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW1_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 3.600e-49
Identity = 196/526 (37.26%), Postives = 234/526 (44.49%), Query Frame = 1 
Query:    1 AKIDESGEQRMFECKEDFRLADEDREGAVKTSTGRVRMAADEDELEESFAKVMALLDEVEGSYREYHKISFNAAAVHPAEAAQEAQRMRAAVCSLVGLHPPSPQSPGAAESDDDRGRRAEPGDADGAGEKVEAGQDVAKEENKDDDGPASTFEEGQEEASLSSGAALDNGG-----SADNEPKFFTYSVPKGVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGK*DRQRHRRGERGAXXXXXXXXXXXXXXXXXXXXXXXXXXTV--------------------------------------------GR*Q--QKTRIGGRKEEKGEGGSYSLRSRYRCRCDGEPSEVLEGEVRPPRGRRPASAGA-----------------------REGAGRSGRVSRQEGPAVPRAEVKREVERHRRFRKE------------------EEERHRAEERLVPRDPTGEAVLEELSMPVEEASILFSSLRDDLMARTEAKAATRGAAANSDCLEAQEALTEELEERLRKH 1302
            AKIDESGEQRMFECKEDFRLADEDRE  VKTST RVRMAADE+ELE SFA+V+ LLD+VE SYREYHK +F AAAVHPA+AAQEA+R+RAA+CSLVGLHPP P +    E+  + G   E G  +G  E V   ++ +  +++     AS  EE         GAAL + G     S+D +P   TY  P G G                                D +     E G+                                                                        GR    ++  +   + EKG  G       Y  R D    E+ E EV   R    A A                         ++ A R+   +    P  P      E                            E  R RAEERLVPRDPTGE V+EELSMPVEEAS L SSLRDDL++RTE +AA R AAA S CLEAQE L+EELEERLRKH
Sbjct:  774 AKIDESGEQRMFECKEDFRLADEDREDEVKTSTSRVRMAADENELETSFARVIDLLDQVEESYREYHKTAFTAAAVHPAKAAQEAERVRAAICSLVGLHPPRPPT---TETPHNEGGDGEGGIGEGTEEAVTEDEEESNTKHR----RASALEE--------EGAALASDGPEEADSSDTKP--VTYRAPGGGGGDASAGAIDYVVDRTPHEVAQDLLSSSV----DEEGTEGDETGSATDEENEEHDGPETTPQGGEGQGAETAAAVDAAXXXXXXXXXXXXXXXXXEPAMSAADVAAAAVKNLPRYWRGRFVPLEEEDLQALELEKGAEGLEE----YFDRRDRRFRELSEEEVEQFRTAADAEAAXXXXXXXXXXXXXXXXXXXXXXXXKKPAKRAAAAT----PPTPEEVAALETXXXXXXXXXXXXXXXXXXXXXXXXXXXEAARRRAEERLVPRDPTGEVVMEELSMPVEEASALLSSLRDDLVSRTETRAAVRVAAAESACLEAQEYLSEELEERLRKH 1270
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig129.123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG74_9PHAE1.880e-5242.58DUF4455 domain-containing protein n=1 Tax=Ectocarp... [more]
D7FNW1_ECTSI3.600e-4937.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig129contigP-littoralis_Contig129:507192..511154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FNW1
Preferred nameCCDC180
PFAMsDUF4455,DUF4456,RBP_receptor
Model size1302
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons8
Evalue3.53e-17
EggNOG OGs2CN0H@1|root,2QT47@2759|Eukaryota
DescriptionDomain of unknown function (DUF4455)
Cds size687
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig129.123.1prot_P-littoralis_Contig129.123.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig129 508250..510281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789573.8464682-UTR-P-littoralis_Contig129:507191..5072211680789573.8464682-UTR-P-littoralis_Contig129:507191..507221Pylaiella littoralis U1_48UTRP-littoralis_Contig129 507192..507221 +
1680789573.8569736-UTR-P-littoralis_Contig129:507545..5076891680789573.8569736-UTR-P-littoralis_Contig129:507545..507689Pylaiella littoralis U1_48UTRP-littoralis_Contig129 507546..507689 +
1680789573.8657384-UTR-P-littoralis_Contig129:508086..5082491680789573.8657384-UTR-P-littoralis_Contig129:508086..508249Pylaiella littoralis U1_48UTRP-littoralis_Contig129 508087..508249 +
1680789573.939863-UTR-P-littoralis_Contig129:510281..5103911680789573.939863-UTR-P-littoralis_Contig129:510281..510391Pylaiella littoralis U1_48UTRP-littoralis_Contig129 510282..510391 +
1680789573.9505906-UTR-P-littoralis_Contig129:510986..5111541680789573.9505906-UTR-P-littoralis_Contig129:510986..511154Pylaiella littoralis U1_48UTRP-littoralis_Contig129 510987..511154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789573.8800776-CDS-P-littoralis_Contig129:508249..5083351680789573.8800776-CDS-P-littoralis_Contig129:508249..508335Pylaiella littoralis U1_48CDSP-littoralis_Contig129 508250..508335 +
1680789573.894356-CDS-P-littoralis_Contig129:509186..5093941680789573.894356-CDS-P-littoralis_Contig129:509186..509394Pylaiella littoralis U1_48CDSP-littoralis_Contig129 509187..509394 +
1680789573.906829-CDS-P-littoralis_Contig129:509417..5097821680789573.906829-CDS-P-littoralis_Contig129:509417..509782Pylaiella littoralis U1_48CDSP-littoralis_Contig129 509418..509782 +
1680789573.919914-CDS-P-littoralis_Contig129:510021..5100421680789573.919914-CDS-P-littoralis_Contig129:510021..510042Pylaiella littoralis U1_48CDSP-littoralis_Contig129 510022..510042 +
1680789573.9320667-CDS-P-littoralis_Contig129:510274..5102811680789573.9320667-CDS-P-littoralis_Contig129:510274..510281Pylaiella littoralis U1_48CDSP-littoralis_Contig129 510275..510281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig129.123.1

>prot_P-littoralis_Contig129.123.1 ID=prot_P-littoralis_Contig129.123.1|Name=mRNA_P-littoralis_Contig129.123.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=229bp
MIVADGQSLGTQTAQGRRWRRGKMWLKRRTKTTTDPPRRSKKDKKRRHYH
PEQRWTTGEAPTTNQSFSPTAFRKVSAAAAAAVVALPTSLPAPRKRSRED
EGDVGEENETGSATDEENEERDEEEERKQQEAADGTGALAPAAPAPAPSG
GDSKKPGSAGGKKRKGKGAATLSAADIAAAAMANLPRYWRGRFDPLADDD
LRALELEKGQEDLEEYLDKRDRRFRELR*
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mRNA from alignment at P-littoralis_Contig129:507192..511154+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig129.123.1 ID=mRNA_P-littoralis_Contig129.123.1|Name=mRNA_P-littoralis_Contig129.123.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3963bp|location=Sequence derived from alignment at P-littoralis_Contig129:507192..511154+ (Pylaiella littoralis U1_48)
GCGAAGATCGACGAGTCGGGCGAACAGCGGGTGAGGGAATCGTCTAAGTG
CCCCCCTGCCCCTGCCCCCCCCACGGACGTTGCGCGCCCGCCCGCCCACC
CACCCACCCACCCACCCACCCACCCACCCACCCTTGTGCTTCCCCTGTGT
TTTTGTACATGGATCTCGCTCTCATTTCCGCCACGCCTGCGTTGTAATAC
GATACAATCCTACGACAACACATCACCAACTCAACCTCGAAAACAATATC
GGTGATTCGGTAACGTAGCCGATAATGCAATGCGTTCGCTAAGAAACTCA
ATGAACGATTTTTTCACTGCGCCGTCTGTACTTCCTGGTGAACGTTGCAC
AAAGATGTTTGAGTGCAAGGAGGACTTTAGGCTCGCGGACGAGGACCGAG
AGGGAGCGGTGAAGACATCGACCGGCAGGGTGAGGATGGCGGCGGACGAG
GACGAGCTGGAGGAGTCGTTCGCGAAGGTCATGGCCCTTCTTGATGAGGT
CAGCCCTTTCGACAGAGAGAGCGAGGGAGAGAGAGAGAGAGGCAGAGGGA
ATGCGAGAAAGTGAAGGGGGGATCAGAGAGAAATAGAGACAGAAAATACA
CACAAAGCGAGGGTAGGGAAGGAGGGAGAGGGAGAGAGAGAAAAAGATAA
ATAGTGCTCTCTCACGGATTCCCAACCCCGCTATCTGCTGCGTTTTATGG
AAATGGTGTAAATACGCAAAGTCTGCCCCAACGTTTGGAGCATTGACTCT
CAATGCTCTCCCTCCCTCCCTCCCTCTCTCTCTCCCTCGTTGACTCGCTA
ACCCCCTTCCCCGAACGAAAAACGAAACTGCGAAATTGCGACGGGGACGT
TTCCGACAACACACCCAAACGGAAAACGAACGAAACCCCCAACAGGTGGA
AGGGTCTTACCGCGAGTATCACAAAATCTCATTTAACGCCGCCGCCGTAC
ACCCCGCCGAAGCCGCGCAAGAGGCGCAGAGGATGCGCGCCGCCGTTTGC
TCCCTAGTGGGGCTGCATCCGCCCTCGCCTCAGAGCCCAGGAGCTGCGGA
GAGCGACGATGATCGTGGCCGACGGGCAGAGCCTGGGGACGCAGACGGCG
CAGGGGAGAAGGTGGAGGCGGGGCAAGATGTGGCTAAAGAGGAGGTGCGT
ACAGAAGGACGAGCACCGAATGGATAGCACCGAAGGTGCGCTCAATAAGG
TTGATTGTTGAAAGGTTGAGGTCGTCCCAAAAATGTGGAGAGGGTCATGC
GTGTGTGTTTTGACCTGTTCATTGCAGTATACCAAGAAATGCAGAACGTA
TCATAGACACTCGCTGTGAGCGAACCGCACAGGAACGGTCTCTTGAGCAA
TGTTCCTCGTCGCTGTTTGACAACGCGGCCAAAAGGTTAACGGCTTCGAT
TGGCTGATCAGAATATTACCTCAACGGTAGATAATTGTGGATCGATCGTA
ATTGAAACAAGAGAGTCTGTCTGGACGGAAAATGTTTGTTTGGGTGACCC
GTTTCGTTTGGCGATCGATGGCGCTGCATACTCTCGGCCGGGGGTGAGGT
TGGTCATAGGTCGGGTAGTCACGCAGGGCAATGCACTTTCATCACGTTGT
GTGAGGAATGAGTTGCTGCTCCAGGCGCTTTCGTTTCATCTTGTCCGTAT
ATTCTTGATGCTCGCTCGGGTGGTCGTAAGTCGGGACCGCGGGGGATAGC
GGGACCGAAACGGCCCTGGTGATGACGCCGTTGGCGCTCATCAGTAAGCG
GCCGCTACCTCGGTTTGATTTTTGAAGGTACGTCTTCGTCCACTTTTCTT
TTTGCACCCTCTGCCTTTTGCACAACTTTGTTCGTGATACATTCGAAAAC
CGGTCAACTCCATACTGGACATTCACAACCGACCAACCCCGTTGGTGATA
GTTGGTGATAACAAAGCACGTTTCAAGGCCCTCTACTCGATGTGTCGCCA
CCCACCCCCCCGGCGCGCCTCAAAACTCACCGCCACCCCCGAAAGAACAA
AGACGACGACGGACCCGCCTCGACGTTCGAAGAAGGACAAGAAGAGGCGT
CACTATCATCCGGAGCAGCGTTGGACAACGGGGGAAGCGCCGACAACGAA
CCAAAGTTTTTCACCTACAGCGTTCCGAAAGGTGTCGGCGGCGGCAGCGG
CGGCGGTGGTAGCACTACCTACATCGTTACCCGCACCACGGAAGAGATCG
CGGGGGATATCCTGTCCTCGGGTAACGAGGATGAAGGCGACGTCGGAGAG
GAAAATGAGACCGGCAGCGCCACCGACGAGGAGAACGAGGAGCGGGACGA
GGAAGAGGAGCGGAAACAGCAGGAAGCCGCCGACGGTACGGGAGCGCTAG
CACCAGCAGCACCAGCACCAGCACCGTCGGGCGGTGACAGCAAAAAACCC
GGATCGGCGGGAGGAAAGAAGAGAAAGGGGAAGGGGGCAGCTACTCTCTC
CGCAGCCGATATCGCTGCCGCTGCGATGGCGAACCTTCCGAGGTATTGGA
GGGGGAGGTTCGACCCCCTCGCGGACGACGACCTGCGAGCGCTGGAGCTC
GAGAAGGGGCAGGAAGATCTGGAAGAGTATCTCGACAAGAGGTACGCCGC
TGCGGCGGATGGATAAATCCTCTTCACACGAGAAAAAAGAGGAGTTCAGC
AAATTCGTTCGTATGTGCTGGATTGGATAACTGCCGTTTCCACCGCCTTT
CGGAGAGGTACTTTTCAGGCAGTCAAAATAGAGTCACAGGCTGATTTTTG
CTCCGCCGCTCAAACACTAATGTAGCTCCCGCCTCGCTTCTCTCCCCCGG
CGGCTCCACCTCCACCTCCACTCCAACCAGGGACCGGCGGTTCCGAGAGC
TGTCCAAAGAGCAGGTAGAACGGCTGCGCGAGGCCTCCGAGGCCGCAGCG
GCGGCGCGCGCACAGGCCAAGGAAGAGGCGGACAAGGCCGCCAAGAAGGC
CAGCAAGCAGGGCGGCGGCAAGGCAAAGAAGCCTGCCAAGGGCGCCGCGG
CGCCGCCGCCCCCCACCCCGGAAGAAGAAGCGGCAGCGCTGGAGGAGGCC
GTCGAGCCCCCGTCGGTGCTGGAGGTGTACGAGGAGGTGAAACGTGAGGT
GGAGCGGCATCGAAGGTTCAGGAAGGAGGAGGAGGAGCGGCACCGCGCAG
AAGAAAGGCTTGTGCCAAGGGACCCCACCGGAGAGGCGGTTTTGGAAGAG
GTCGGTGTTCATCTAGCCAGTCACCACGTGGCGTGTTCATGTGGTCCTTG
TTGCTTTGATGTTGATGGGGGTTTCTTGCGGTCTTTATGATAAATATTTC
CTGATCTCGACCCAGGCCATTTACGATCCGCACTGATCCGTCCGCAGAGA
CGACCCCTGTGGTTGGCCACAGGCTGCCAAAAATGCCTAATATATTCAAC
TTGGTGGTGAAGTGACATTTACTTCTGCCTTGGAAGGGGGTCAAGATATA
CTACGGGCTCAGCGAGGGTGTAGGGAGCTCGATCGTTTGAAGACGGCTTT
AGAGAAATCGCACGACCCTAGCCCCCAAGGGTCGCCACCGACGATGGTTC
CCTCGCCCCATCGCACAAAATATCCGACCCGCAACCAAAACAATAAAGGT
CGGGTCAAAACGTAAAAGACATGAGATATTCTGTGCCTCTCAGTATTTTC
ATGCAGTACAAGCAGACTTGCCTTCGTTTGCTCGGATGCTCAAGGCACCA
TTTACGGTACTCCCCGCGGAAGCTCTAAGCTTTGTCGGTGTGTCCCAACC
TAGTTCTTCCACGAACAACGATTGATTGCGTCCGATCGTCCGCAGCTGTC
GATGCCCGTGGAAGAAGCCTCGATACTGTTTTCGTCGCTCAGAGACGACC
TGATGGCAAGGACGGAGGCCAAGGCCGCGACCAGGGGTGCGGCCGCGAAT
AGCGACTGCCTTGAGGCGCAGGAGGCTCTCACGGAAGAGCTCGAGGAGAG
GCTGCGGAAGCAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig129:507192..511154+

>mRNA_P-littoralis_Contig129.123.1 ID=mRNA_P-littoralis_Contig129.123.1|Name=mRNA_P-littoralis_Contig129.123.1|organism=Pylaiella littoralis U1_48|type=CDS|length=687bp|location=Sequence derived from alignment at P-littoralis_Contig129:507192..511154+ (Pylaiella littoralis U1_48)
ATGATCGTGGCCGACGGGCAGAGCCTGGGGACGCAGACGGCGCAGGGGAG
AAGGTGGAGGCGGGGCAAGATGTGGCTAAAGAGGAGAACAAAGACGACGA
CGGACCCGCCTCGACGTTCGAAGAAGGACAAGAAGAGGCGTCACTATCAT
CCGGAGCAGCGTTGGACAACGGGGGAAGCGCCGACAACGAACCAAAGTTT
TTCACCTACAGCGTTCCGAAAGGTGTCGGCGGCGGCAGCGGCGGCGGTGG
TAGCACTACCTACATCGTTACCCGCACCACGGAAGAGATCGCGGGAGGAT
GAAGGCGACGTCGGAGAGGAAAATGAGACCGGCAGCGCCACCGACGAGGA
GAACGAGGAGCGGGACGAGGAAGAGGAGCGGAAACAGCAGGAAGCCGCCG
ACGGTACGGGAGCGCTAGCACCAGCAGCACCAGCACCAGCACCGTCGGGC
GGTGACAGCAAAAAACCCGGATCGGCGGGAGGAAAGAAGAGAAAGGGGAA
GGGGGCAGCTACTCTCTCCGCAGCCGATATCGCTGCCGCTGCGATGGCGA
ACCTTCCGAGGTATTGGAGGGGGAGGTTCGACCCCCTCGCGGACGACGAC
CTGCGAGCGCTGGAGCTCGAGAAGGGGCAGGAAGATCTGGAAGAGTATCT
CGACAAGAGGGACCGGCGGTTCCGAGAGCTGAGGTGA
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