mRNA_P-littoralis_Contig1286.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1286.3.1
Unique NamemRNA_P-littoralis_Contig1286.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1286.3.1 vs. uniprot
Match: Q6XM43_9PHYC (FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XM43_9PHYC)

HSP 1 Score: 86.3 bits (212), Expect = 3.270e-18
Identity = 56/136 (41.18%), Postives = 75/136 (55.15%), Query Frame = 3 
Query:   81 TDMGKQVR*EDAFH*SIFCKYTYR*SCYCIIHEAREHNIGTFNEAFGNIQSVLTLYHGVLSG----DEKSDLLIPTRMENCTIRASKAMEAIFIEILPKDAKKAAKVEKAMMGIQTSIEEFINAGREKVKDVLPKL 476
            T  GK+VR     H      +        +I + R  N   FNEAF NIQ+VL++YH   S     ++  D++  T+M N T+RASKAMEA+ + IL  D  KAA  E+AMM IQ ++EE IN  R K K  LP +
Sbjct:   42 THQGKKVRLVYLHHVPGLKDHL------TVIFQHRTRNERAFNEAFRNIQNVLSVYHLSSSSRTPDNDPPDIMAATKMTNYTVRASKAMEAVHVSILQSDFTKAAAFEEAMMKIQLTLEEKINEIRLKSKQSLPTI 171
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BLAST of mRNA_P-littoralis_Contig1286.3.1 vs. uniprot
Match: B5LWK7_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWK7_9PHYC)

HSP 1 Score: 79.7 bits (195), Expect = 8.300e-16
Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = 3 
Query:  144 TYR*SCYCIIHEAREHNIGTFNEAFGNIQSVLTLYHGVLSGDEKSDLLIPTRMENCTIRASKAMEAIFIEILPKDAKKAAKVEKAMMGIQTSIEEFINAGREKVKDVLP 470
            + R   Y + H  RE     FNEAF NIQ+V+++YH V      ++++  T+M N  +RASKA+ A+  EIL KD  KAA  EKAMM IQ S+EE I+  R K K  LP
Sbjct:   58 SLRDDLYTVFHH-REFKRDAFNEAFRNIQNVISVYHPVKEA-AVANMMSATKMTNFGVRASKALGAMHDEILAKDPMKAAAFEKAMMSIQLSLEESIDFVRLKSKKSLP 164
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1286.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q6XM43_9PHYC3.270e-1841.18FirrV-1-A44 n=1 Tax=Feldmannia irregularis virus a... [more]
B5LWK7_9PHYC8.300e-1645.87Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1286contigP-littoralis_Contig1286:39257..39735 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size479
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789573.253433-CDS-P-littoralis_Contig1286:39256..394361680789573.253433-CDS-P-littoralis_Contig1286:39256..39436Pylaiella littoralis U1_48CDSP-littoralis_Contig1286 39257..39436 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789573.2656167-UTR-P-littoralis_Contig1286:39436..397351680789573.2656167-UTR-P-littoralis_Contig1286:39436..39735Pylaiella littoralis U1_48UTRP-littoralis_Contig1286 39437..39735 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1286.3.1prot_P-littoralis_Contig1286.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1286 39257..39436 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1286.3.1

>prot_P-littoralis_Contig1286.3.1 ID=prot_P-littoralis_Contig1286.3.1|Name=mRNA_P-littoralis_Contig1286.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=60bp
MENCTIRASKAMEAIFIEILPKDAKKAAKVEKAMMGIQTSIEEFINAGRE
KVKDVLPKL*
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mRNA from alignment at P-littoralis_Contig1286:39257..39735-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1286.3.1 ID=mRNA_P-littoralis_Contig1286.3.1|Name=mRNA_P-littoralis_Contig1286.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=479bp|location=Sequence derived from alignment at P-littoralis_Contig1286:39257..39735- (Pylaiella littoralis U1_48)
CAAGCTCTTATTTCTCGCGCTGTTAAAGGGGGTCTGTTCGGTTTAAAGTT
GGGAGTTGTTCTGGGAGCTGCTGGTAATGCACTGACATGGGAAAACAGGT
TCGGTAAGAAGACGCGTTTCACTAATCTATTTTCTGTAAGTATACTTATA
GATGATCTTGTTACTGTATAATACACGAAGCGAGAGAGCACAACATTGGT
ACCTTCAACGAGGCTTTTGGAAATATACAGAGTGTTTTAACTTTGTACCA
CGGGGTCTTGTCTGGTGACGAAAAGTCCGACCTTCTTATACCAACTAGAA
TGGAAAATTGTACCATACGCGCGTCTAAGGCGATGGAGGCTATATTCATA
GAAATTTTGCCGAAAGATGCGAAGAAGGCCGCTAAAGTAGAGAAAGCCAT
GATGGGTATTCAAACGTCCATCGAGGAGTTTATCAATGCAGGTAGGGAGA
AAGTGAAGGACGTCCTCCCAAAGCTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1286:39257..39735-

>mRNA_P-littoralis_Contig1286.3.1 ID=mRNA_P-littoralis_Contig1286.3.1|Name=mRNA_P-littoralis_Contig1286.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=180bp|location=Sequence derived from alignment at P-littoralis_Contig1286:39257..39735- (Pylaiella littoralis U1_48)
ATGGAAAATTGTACCATACGCGCGTCTAAGGCGATGGAGGCTATATTCAT
AGAAATTTTGCCGAAAGATGCGAAGAAGGCCGCTAAAGTAGAGAAAGCCA
TGATGGGTATTCAAACGTCCATCGAGGAGTTTATCAATGCAGGTAGGGAG
AAAGTGAAGGACGTCCTCCCAAAGCTTTGA
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