mRNA_P-littoralis_Contig1285.1.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1285.1.2
Unique NamemRNA_P-littoralis_Contig1285.1.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig1285.1.2 vs. uniprot
Match: A0A6H5KV05_9PHAE (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KV05_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 1.020e-73
Identity = 128/167 (76.65%), Postives = 143/167 (85.63%), Query Frame = 2 
Query:  158 MRGVDAWTTGLAVLALMGVTQGFVPYGAPAVRSASRSWGSSSSSANTKRARATIKVPARRAVSGMQMHQVTIEHEGKSTVLEVDDNTSILDAALDNDIELPHDCKLGVCLTCPSIVVSGEIDQSDGTLEDSVTAQGYALTCCSFARSDVTIRSVEEDELVGAQFSDR 658
            MRGVDA T G A LALMGVT+GFVPYG PA+RSA+ + G S +S +T+RAR     P     S +QMHQVTIEHEG STVLEVD+NT+IL+AALDNDI+LPHDCKLGVCLTCPS VVSGE+DQSDGTLEDSVTA GYALTCC++ARSDVTIRSVEEDELVGAQFSDR
Sbjct:    1 MRGVDACTAG-AFLALMGVTRGFVPYGTPAIRSAAATLGGSRTSDSTRRARQETLRPT---FSALQMHQVTIEHEGTSTVLEVDENTTILEAALDNDIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTALGYALTCCTYARSDVTIRSVEEDELVGAQFSDR 163
[Close]
BLAST of mRNA_P-littoralis_Contig1285.1.2 vs. uniprot
Match: A0A7S3UW21_HETAK (Ferredoxin n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UW21_HETAK)

HSP 1 Score: 162 bits (409), Expect = 4.570e-44
Identity = 81/100 (81.00%), Postives = 87/100 (87.00%), Query Frame = 2 
Query:  359 HQVTIEHEGKSTVLEVDDNTSILDAALDNDIELPHDCKLGVCLTCPSIVVSGEIDQSDGTLEDSVTAQGYALTCCSFARSDVTIRSVEEDELVGAQFSDR 658
            HQVTIEHEG +TVLEV + TSILDAALD  I+LPHDCKLGVCLTCPS VVSGE+DQSDGTLEDSVTAQGYALTC +F RSD TI S+ EDELV AQFS R
Sbjct:   42 HQVTIEHEGTTTVLEVPEYTSILDAALDAGIDLPHDCKLGVCLTCPSKVVSGEVDQSDGTLEDSVTAQGYALTCMTFPRSDCTIMSITEDELVDAQFSGR 141
[Close]
BLAST of mRNA_P-littoralis_Contig1285.1.2 vs. uniprot
Match: A0A836CGC2_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC2_9STRA)

HSP 1 Score: 157 bits (397), Expect = 3.770e-42
Identity = 75/105 (71.43%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:  347 GMQMHQVTIEHEGKSTVLEVDDNTSILDAALDNDIELPHDCKLGVCLTCPSIVVSGEIDQSDGTLEDSVTAQGYALTCCSFARSDVTIRSVEEDELVGAQFSDRQ 661
            G+ MHQVTIE  GKS  LEVD+ TS+L+AALD  IELPHDCKLGVCLTCPS +VSGE+DQ   TL+DSV  QGYALTCCSF RSD+ IR+++EDELVGAQF  R+
Sbjct:   51 GLYMHQVTIEVAGKSHTLEVDEKTSVLEAALDAGIELPHDCKLGVCLTCPSKIVSGEVDQDGTTLDDSVVEQGYALTCCSFPRSDLVIRAIDEDELVGAQFEGRE 155
[Close]
BLAST of mRNA_P-littoralis_Contig1285.1.2 vs. uniprot
Match: A0A7S2V4F7_9STRA (Ferredoxin n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4F7_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.610e-41
Identity = 89/158 (56.33%), Postives = 110/158 (69.62%), Query Frame = 2 
Query:  188 LAVLALMGVT-QGFVPYGAPAVRSASRSWGSSSSSANTKRARATIKVPARRAVSGMQMHQVTIEHEGKSTVLEVDDNTSILDAALDNDIELPHDCKLGVCLTCPSIVVSGEIDQSDGTLEDSVTAQGYALTCCSFARSDVTIRSVEEDELVGAQFSDR 658
            L VLA +  T +GF  +    V     SW SS SS + +R      VP        + HQVTI+HEGK TVLEVD++T+IL+AALD  I+LPHDC+LGVCLTCPS +VSGE+DQ  GTL+DSV  QG+ALTC S+ RSD  +RSVEEDE+V AQF+DR
Sbjct:   11 LGVLAAIAATGEGFATHNLKPV-----SWRSSPSSLSRQRL-----VP--------KAHQVTIQHEGKDTVLEVDESTTILEAALDAGIDLPHDCQLGVCLTCPSRIVSGEVDQGMGTLDDSVVEQGFALTCISYPRSDCVVRSVEEDEMVNAQFADR 150
[Close]
BLAST of mRNA_P-littoralis_Contig1285.1.2 vs. uniprot
Match: A0A482SDV3_9ARCH (2Fe-2S iron-sulfur cluster binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SDV3_9ARCH)

HSP 1 Score: 146 bits (369), Expect = 2.850e-38
Identity = 70/98 (71.43%), Postives = 84/98 (85.71%), Query Frame = 2 
Query:  359 HQVTIEHEGKSTVLEVDDNTSILDAALDNDIELPHDCKLGVCLTCPSIVVSGEIDQSDGTLEDSVTAQGYALTCCSFARSDVTIRSVEEDELVGAQFS 652
            ++VTI+HEGK T+L+V D+ SIL+AALD  I+LPHDCKLGVCLTCPS +VSG++DQSDGTL  SV A+GYALTC SF  SDV +RS+EEDELV AQFS
Sbjct:   43 YKVTIQHEGKDTILDVQDDCSILNAALDAGIDLPHDCKLGVCLTCPSKIVSGKVDQSDGTLAKSVQAKGYALTCVSFPCSDVVVRSIEEDELVSAQFS 140
[Close]
BLAST of mRNA_P-littoralis_Contig1285.1.2 vs. uniprot
Match: A0A5K0VF29_9MAGN (Ferredoxin n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K0VF29_9MAGN)

HSP 1 Score: 128 bits (322), Expect = 1.830e-31
Identity = 64/117 (54.70%), Postives = 86/117 (73.50%), Query Frame = 2 
Query:  296 TKRARATIKVPARRAVSGMQMHQVTIEHEGKSTVLEVDDNTSILDAALDNDIELPHDCKLGVCLTCPSIVVSGEIDQSDGTLEDSVTAQGYALTCCSFARSDVTIRSVEEDELVGAQ 646
            T+R R T +V    AV+  + ++VTI+HEGKST LEV ++ SIL+ ALD  +E+PHDCKLGVC+TCP+ +VSGE+DQS G L D V  +GYAL C S+ RSD  IR++ E+EL+  Q
Sbjct:   33 TRRRRPTRQV----AVASTKNYKVTIDHEGKSTTLEVGEDESILERALDEGLEVPHDCKLGVCMTCPARLVSGEVDQSGGMLSDDVVERGYALLCASYPRSDCHIRTIPEEELLSLQ 145
[Close]
BLAST of mRNA_P-littoralis_Contig1285.1.2 vs. uniprot
Match: A0A8J5WV81_ZIZPA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WV81_ZIZPA)

HSP 1 Score: 126 bits (316), Expect = 1.050e-30
Identity = 57/98 (58.16%), Postives = 78/98 (79.59%), Query Frame = 2 
Query:  359 HQVTIEHEGKSTVLEVDDNTSILDAALDNDIELPHDCKLGVCLTCPSIVVSGEIDQSDGTLEDSVTAQGYALTCCSFARSDVTIRSVEEDELVGAQFS 652
            ++VTIEH G+S V+EV+++ +IL+ ALD  I++PHDCKLGVC+TCP+ +V+G++DQSDG L D V AQGYAL C S+ RSD TIR + EDEL+  Q +
Sbjct:   43 YKVTIEHAGESRVVEVEEHETILERALDEGIDVPHDCKLGVCMTCPARLVAGQVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQLA 140
[Close]
BLAST of mRNA_P-littoralis_Contig1285.1.2 vs. uniprot
Match: UPI001ADA50ED (ferredoxin C 1, chloroplastic n=1 Tax=Oryza brachyantha TaxID=4533 RepID=UPI001ADA50ED)

HSP 1 Score: 125 bits (315), Expect = 1.360e-30
Identity = 63/115 (54.78%), Postives = 82/115 (71.30%), Query Frame = 2 
Query:  308 RATIKVPARRAVSGMQMHQVTIEHEGKSTVLEVDDNTSILDAALDNDIELPHDCKLGVCLTCPSIVVSGEIDQSDGTLEDSVTAQGYALTCCSFARSDVTIRSVEEDELVGAQFS 652
            R    +PA RA      ++VTIEH G+S V+EV ++ +IL  ALD  I++PHDCKLGVC+TCP+ +V+GE+DQSDG L D V AQGYAL C S+ RSD TIR + EDEL+  Q +
Sbjct:   30 RVAAALPAPRA------YRVTIEHGGESRVVEVGEDETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQLA 138
[Close]
BLAST of mRNA_P-littoralis_Contig1285.1.2 vs. uniprot
Match: Q850T5_ORYSJ (Ferredoxin n=11 Tax=Oryza TaxID=4527 RepID=Q850T5_ORYSJ)

HSP 1 Score: 125 bits (315), Expect = 1.580e-30
Identity = 58/98 (59.18%), Postives = 76/98 (77.55%), Query Frame = 2 
Query:  359 HQVTIEHEGKSTVLEVDDNTSILDAALDNDIELPHDCKLGVCLTCPSIVVSGEIDQSDGTLEDSVTAQGYALTCCSFARSDVTIRSVEEDELVGAQFS 652
            ++VTIEH G+S V+EV++  +IL  ALD  I++PHDCKLGVC+TCP+ +V+GE+DQSDG L D V AQGYAL C S+ RSD TIR + EDEL+  Q +
Sbjct:   46 YKVTIEHGGESRVVEVEEGETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLKVQLA 143
[Close]
BLAST of mRNA_P-littoralis_Contig1285.1.2 vs. uniprot
Match: J3LRB4_ORYBR (Ferredoxin n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LRB4_ORYBR)

HSP 1 Score: 125 bits (313), Expect = 3.510e-30
Identity = 58/98 (59.18%), Postives = 76/98 (77.55%), Query Frame = 2 
Query:  359 HQVTIEHEGKSTVLEVDDNTSILDAALDNDIELPHDCKLGVCLTCPSIVVSGEIDQSDGTLEDSVTAQGYALTCCSFARSDVTIRSVEEDELVGAQFS 652
            ++VTIEH G+S V+EV ++ +IL  ALD  I++PHDCKLGVC+TCP+ +V+GE+DQSDG L D V AQGYAL C S+ RSD TIR + EDEL+  Q +
Sbjct:   51 YRVTIEHGGESRVVEVGEDETILSRALDEGIDVPHDCKLGVCMTCPARLVAGEVDQSDGMLSDDVVAQGYALLCASYPRSDCTIRVIPEDELLQVQLA 148
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1285.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV05_9PHAE1.020e-7376.652Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S3UW21_HETAK4.570e-4481.00Ferredoxin n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A836CGC2_9STRA3.770e-4271.432Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S2V4F7_9STRA2.610e-4156.33Ferredoxin n=1 Tax=Fibrocapsa japonica TaxID=94617... [more]
A0A482SDV3_9ARCH2.850e-3871.432Fe-2S iron-sulfur cluster binding domain-containi... [more]
A0A5K0VF29_9MAGN1.830e-3154.70Ferredoxin n=2 Tax=Nymphaea colorata TaxID=210225 ... [more]
A0A8J5WV81_ZIZPA1.050e-3058.162Fe-2S ferredoxin-type domain-containing protein n... [more]
UPI001ADA50ED1.360e-3054.78ferredoxin C 1, chloroplastic n=1 Tax=Oryza brachy... [more]
Q850T5_ORYSJ1.580e-3059.18Ferredoxin n=11 Tax=Oryza TaxID=4527 RepID=Q850T5_... [more]
J3LRB4_ORYBR3.510e-3059.18Ferredoxin n=1 Tax=Oryza brachyantha TaxID=4533 Re... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1285contigP-littoralis_Contig1285:7079..16207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G156
PFAMsFer2
Model size1584
Max annot lvl2759|Eukaryota
KEGG koko:K02639
KEGG Pathwayko00195,map00195
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009055,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009642,GO:0009644,GO:0009987,GO:0016491,GO:0022900,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0048037,GO:0050896,GO:0051536,GO:0051537,GO:0051540,GO:0055114
Exons4
Evalue1.14e-75
EggNOG OGsCOG0633@1|root,2RZRG@2759|Eukaryota
Ec32 ortholog description2Fe-2S ferredoxin-type domain
Ec32 orthologEc-08_005330.1
Description2 iron, 2 sulfur cluster binding
Cds size507
COG categoryC
BRITEko00000,ko00001,ko00194
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1285.1.2prot_P-littoralis_Contig1285.1.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1285 7999..16050 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789573.030005-UTR-P-littoralis_Contig1285:7078..79981680789573.030005-UTR-P-littoralis_Contig1285:7078..7998Pylaiella littoralis U1_48UTRP-littoralis_Contig1285 7079..7998 -
1680789573.0830212-UTR-P-littoralis_Contig1285:16050..162071680789573.0830212-UTR-P-littoralis_Contig1285:16050..16207Pylaiella littoralis U1_48UTRP-littoralis_Contig1285 16051..16207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789573.043391-CDS-P-littoralis_Contig1285:7998..81001680789573.043391-CDS-P-littoralis_Contig1285:7998..8100Pylaiella littoralis U1_48CDSP-littoralis_Contig1285 7999..8100 -
1680789573.0547578-CDS-P-littoralis_Contig1285:11115..113011680789573.0547578-CDS-P-littoralis_Contig1285:11115..11301Pylaiella littoralis U1_48CDSP-littoralis_Contig1285 11116..11301 -
1680789573.0630696-CDS-P-littoralis_Contig1285:12746..129011680789573.0630696-CDS-P-littoralis_Contig1285:12746..12901Pylaiella littoralis U1_48CDSP-littoralis_Contig1285 12747..12901 -
1680789573.0746315-CDS-P-littoralis_Contig1285:15986..160501680789573.0746315-CDS-P-littoralis_Contig1285:15986..16050Pylaiella littoralis U1_48CDSP-littoralis_Contig1285 15987..16050 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1285.1.2

>prot_P-littoralis_Contig1285.1.2 ID=prot_P-littoralis_Contig1285.1.2|Name=mRNA_P-littoralis_Contig1285.1.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=169bp
MRGVDAWTTGLAVLALMGVTQGFVPYGAPAVRSASRSWGSSSSSANTKRA
RATIKVPARRAVSGMQMHQVTIEHEGKSTVLEVDDNTSILDAALDNDIEL
PHDCKLGVCLTCPSIVVSGEIDQSDGTLEDSVTAQGYALTCCSFARSDVT
IRSVEEDELVGAQFSDRQ*
back to top

mRNA from alignment at P-littoralis_Contig1285:7079..16207-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1285.1.2 ID=mRNA_P-littoralis_Contig1285.1.2|Name=mRNA_P-littoralis_Contig1285.1.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=9129bp|location=Sequence derived from alignment at P-littoralis_Contig1285:7079..16207- (Pylaiella littoralis U1_48)
ACACAGCACACCAGACACGCAGCACAACATCCAAACGGAAGAACGCTGGA
CGTGGGACTCAAAGAAAGCATATATTTCGGTCGGCTGTGGTGAAAGGGAA
AGCACCCGTTCTGCGTTACTTGTGGGCGTGCATTTTTGATCGAGGGCGGC
CGAGAAAATGAGGGGTGTTGACGCGTGGACAACGGGATTAGCTGTGCTGG
CTCTGATGGGCGTCACTCAAGGTGCTCAGAGAGGAAGGGAAAGCGTTGCT
TTGGTTACTCGCGACAAGCTGCTTCAGTTAAAAGACATGGCTGCTGCACT
TATGGTTTGTGTCAGAGAGGATGACCAGTGCTGCCGTACGTGGCTGCAAT
TGTTCATGTGATTAGATTGTTGTCGTTGTGTGTATACTATGTGTATTTCT
TGGCTGCCTCACTGCTCTACTTCTGTAGATCGAAGCACATACAGTATGAT
ATGATATGAGAGCTTCATGTGTCATTCATACATGGGCCGTCATACATCCC
ACTTATATCATATGATATCATATGATACATCAAGTACCAGGGCATCAAGA
TGCAGACGATACTTGTACCAAATTTCTCGAACAAGGAGGACGTCGTCAAG
TCTCTTGCCTCTGCTGGCAGAGTACTTCAGCAACTCACGCACCGCGTGCC
GACATCTAGTCGTCCACCGTGCGGGATTACGTAGCGTTGAAAAGTCCTCA
CCGCCACCGCAGTCTAAACCGAACTTCTCCGCCTCTGGCGAGGCATCATG
AACACTGCGCTGAATCCATTATTCCAATCTACAGCACACAACCGCCGTCT
CCCCCTTTCTACCTTCATTTTTCGCTGCCAGCCGGTTATGCTTCGTCACC
CCCCGTCGCGTACATGAACACCACGATATAATCGCTCGGGTCGTCCTTGC
TGTAGCCTCTGCTGCCCGCAGATCGCACGCAATGTACAAGTATTGCTATG
ATACGTCGCGCGTACAAGCGCTACTCTCTAGTTGTTGTGTATTTTCGGTG
CTTGCTCTGTCCGAGCTGCAATTCCAACGTATACGCCGTCAGGCAACACG
GCACTTCTGTGTCGTTCGCAATTCTGCCGCGAGTGTTGGTTAGTGCTGAG
GGTGGTTCTTGTCTCAAAGCGTTTTGGACCCATTCAAAAAGCAAAAAGCA
AAAAGCAAAAATCAAACTCAGAATATGTCACTGATAGGTCAACAATCGAT
CCGCCCGCACCACGTTTTGGATTTCAGTTTTATTCTTCCGAAACGGGAAG
GAAAGTAAGGGTGGCTCTTGTCAATTTGTTTACCGTACAGTATTCAAAAT
CAAAAACAAAATTGGATTTTGATTTTGATTTCGTGTTGGGTCCGATCTGC
TGCAGCTTGCGTTTGTTTAAAGTCAAAAGCCTATAAAATAAAAATAAAAA
CAGGGGTCACAAGACAGATGGTGTGTGATATGAGCATGCCGTGTCTCGAT
TCCAAGACAAGTGCTGGAGCTGTCGTGCCTCAAACGAAGAGCACGATGGT
GCCCCACGTCGCCCTGACTCAGGCGCTTTGGTAGTTCTTTGTTTGGGATC
GATAACCGAAAAACTCGGTAAGAGATGAGTAAGTACGTGTTGCACATCTG
CCCTATGTGGAGGTAGCGGCCGTGTCGGCCACACAAACAGCAGTTGAGCA
ACAAACTTCCTGCACACTTCTACACACTTGAGTGCTCTCCGGATTCTGAT
CGGAATTCGCTCAAACAAAGTGATCTGTATTCTGCTTGATACCAGCTTTC
TCCGGAGTTAGCACATGTGTACAGCTGGGGTCTACACGTTGTTCTGTGAT
CAGCTAAGCAAACATATGTAGTGTGCACCATGTGCTCCCGGAATGCACAG
CAAACACCTCTCTGTCTCGTATTCTAGGTCTATTCGTTTTTGAGCCGCGT
TTTTGATCTATTGGCGGGAAGGAAAGTGTTTTTTACTTTACTTCCCGTTT
CGGAAGAAAAAAACTGAAATCCAAAACGTGGTTCGGGCGGATGAATTGTT
GACCTATCAGTGACATATTCTGAGTTTGATTTTTGCTCTTTGATTTTTGA
ATGGGCCCAAAACGCTTTGACAAGAGCCACCCTAAAAACACTTTCCTTCC
CGCCGATAGGTGCTCGTGTCGCAAGATAAGGGCGTTAGCGTCGAATTAGA
TTGCCAGTCGTCGGCAGCACCTCGAAAATCTGCCGCCGTTGGCAAAAAAA
AAGAATCCTGCCTGCGCATACGTTGGCGATATTTTAAAACTCCAAAAGAA
TTATAGACTCAAATCTACTTCAAGTACACTTCGCAAGCAGGCTCAAATCT
ACTACTGCTGTAATTCGAAGTATTACAATGGAATACGGTTCCGCACACTC
TGAATATAACGCGAAAACGAGCCAAGGTAATGCAGTTGCATGTTTTCCAA
AAGAACAAGCCGGTTGGACGGGCGGAGGGAGCAATTCCGTACACAAATTG
AAACGCATTTCCTCACTGCAGAGGTTTGCCGTGGGTTGCAATGCTGGACA
AGGTTCCTGAGATGGCGGTTCCCCTGGCAGTTTTCTCTAGTCCCCTCATT
CGGAGGTTCTCCAGCACACTCAACCGGGATCACAAGAGAACCTACCGTGG
GTGTCGGAAGGTGTACCTACTGAACCACCGAGGCGACCGATTGGGTGTGC
GACAAACGTTGAGGTAGACACGTCACGATGCCTGTTGCTCAAACGCCCCG
ACTACTGCACTGCAGTCTCCGAACCATTTTTTCTCCGGCCGTCTACGTAC
TGTTCAAAATGGCTCTGCGTGATGTGTTTGGCGCTTATTTTATACCGCGA
GATACTGCTGTAGCGAACAAGCGTTCTGGGGCTTCGCGCGTGGTAGGTTG
CGTCTCCTGATGTGCTGATAAACCGAACTGGTTCTTCTCGAAACGCAAGG
ATTACAATGTCAACCGACCCTCCATGCACGGAGATCTTTCGTTGTGCAGC
AACTCGCGCATGAGCGAAGAAACACACGAAGACGTCCCAACACGCAACAC
ACAAAGATACGCCGGCGAGAGCTTCCGATACGTATGCCTCAACGACAAGT
CACGGATAGACAAAGAAGACACATACTGACAGCGGACAACGATGGGCTGT
CGTAAAGAAGTCGAAGGCCTCGCAAGTACAGCAGCACACTGCGGGGGTTT
GAAAAGTACCGGATGCAGTAAGAAGTGTCCATCGTTGGTGCTGCACGATT
CTGTACGAGACGAGGTTCTTTTTTGGTCTATGTTACCGAAATCCTTACAC
CAACTGCTGCTGTATTTTGCCACTTTTTTTTTTCCACTGCCGTCGTACTC
TGGAAGGTTTTGTTCCGTACGGGGCCCCCGCCGTCCGATCGGCCTCCCGA
AGCTGGGGTAGCAGCAGCAGCAGCGCGAACACCAAGCGGGCGAGAGCAAC
AATAAAAGTACCCGCCCGGCGAGCTGTATCAGGCATGCAGATGCACCAGG
TTACCATTGAGGTATGGCATGCACGCCGTGCTCTTTGCGTGGGAGGGCAG
CATTTGAAGTGCGGACTATCAACAGCAGAGCCACGTGAATGTTACGCCAG
CTTCGGGCGGCAAGTGGTGTCGCCTTCGCTTCAAGTTTCCCCGCGGCCGT
CGTTTGTACTTTTACTTTTCATATTGCTTCCTTCGCATTTTGTCATCCGG
GGGTGCCCACAATCCGCGATCGATATGGTACTTTGATAGTCGAAATATAT
GTGAAAAAAATCGCCCACGTGTCACCGCTTCGAGTCCATCGCTTCGAAAA
GAGTCGCCCCCTCGTACCACGTTTGTGTACGAATGCACTCCCTCAGTCTT
TGTGCCCTCCCTGTATCTCCTTTTTTATTTTATTTTTGTCTTTCGTCTGT
TGATCATGTAGTTACTGGGCCATCGCCCTGGTTTGCGTCTGCTTTGGTCT
GTCATGGCCCTGGGCCCTGGTTCGATGCACGAAGTACTTCGAAGTATATG
GTTATGGTTGAGGTTTGTCTTGGTTATTTTTTGTTTGTCGGACTGTTTCC
AATTTTTGTTTTTCTTTCGAGCCTGTTATTATTTTTTCTGTATTTGTTTG
GTATCCTGGCCACCACAGATGGTACCCCAACGGTACCACGTCTGATCTGA
CTGTGGGTGATCATAGTCCATATATTTTATTTTTTTATTTTTTTTTTCCT
CCTAGCACGATATGTGCCTGGTTTGTGACCACGGGCTAGACTGCGGCGGT
AGTGAGCTAATGTGAGAATCAACAACAACAACAACCACGACTCCGCAAAG
CGGTCGCCCTCTTGAAGAGTTCAGGTGGTTTGTTCGACCGTCCGGTAGGG
CTGGCTCTGTATGAATTATGTTTCAATTTTCGAGAGTGGAAAGACAAGTG
CCGCAGAACAAGATACCGTCAGTACCGCAAGTACAGCAGCGTCAGTAACT
TCACGGGGAAGGAAAGATGTTGGGTAAAGTGTGGGTCAGATTCGGCCTTT
CTCGAAGTCGTTCGTCGACCGAAGGCCGCCGTTTGCGTATTGGGGATCGG
ACATGCTATGATGGCATCGTACCAGTGGTCACTCACTGCCAGTGACGTTC
ATCTTTGCACCTTGTTCTTTCGAGTTTTGCCTTTTCGTAGCCTGTTTTTT
TATTTCCCTTGATTTTCCTCCAATGTAAACAAACCTCACAGCGGCATCTG
TACACCGCGTAGGTATTTCTAGGAAAATGCTGTACTTCTCGACGCGGCAC
AACCCCGAGTAATAAACGGGCTGTTGCGATCACACGCCCGACTTTTTTTT
GTTTCCTCTTTTGGCAACGACTAGTTTTAACAACGGAGCCCTCGGCTTGG
CAGCGCCATGAAATGGGTACGTGAAACCCACTTTTATCCTTTCTCTTGGT
CACCTTTTCTTTTCCCTCGGCGTTTGTGTGTGCACGCACTGCTGTCTGCT
GCGCAGCACGAGGGCAAGTCGACCGTGCTGGAGGTGGACGACAACACGTC
TATCCTAGATGCGGCGCTGGACAACGATATCGAGCTCCCGCACGACTGTA
AGCTCGGCGTGTGCCTGACGTGCCCCTCCATCGTCGTGAGCGGGGAGATA
GACCAGAGCGACGGGACCCTTGAGGACAGCGTAACGGCGCAGGTGGGTTA
GGCCGGGGTCGGAAACGAGACACTTCTCGTCTTCTGTATGTACGAGTTTT
TTCACGTCTTATTTTTTTTATACAAGTATTGAGAAGCAGTCCACGAGCGC
AGCGAGGTGTACCCTCGTTGTAAACTCATACCAACCAGGTCGTGAATAAA
AAAAATAATAATGAAGTGTCACAGGGTGCCTATATTGTTGAGAAGGTTTT
TTTATTTCTGCGTTTGTTCGAAAAATTAGCCACGTTGTTTGTTTTTCTTA
CCAAGACATCAGTGTGTTCGCCTCTCCCGACACAGTTCAACACAGATCGC
TTAGACCAAGGGCTTGAAGTAATGACATGAGGAGCATCTACCCATCGCAG
CTGGGTTCACCACAACCAGTACTCTCTTCGCTCACTTACCTTTTCAAACG
AGGAGGTAGCACTTGTTTGTTCCCACAACGTCCAACACCAAGTCACACGG
CTTAACGCAGGTATTTGAGAAGCTGCAACACTGACGCACACACTGGTTTT
CAACATTGACCAATCCCCTAGTATTTTGTGGCCAATGAATGAAATGAACA
AGTTGGTGTTGTTGACGGGGCGGTGGTGGTGATGGCGGTTGTGCGAAATT
TTCTCGTTTTCAGGACGGCTTTCTTATGGCCCGCACAGAACACAGGAAGA
GGAGACGCGTGGCGTGTTGTGTAGTTTTTGATGAATGCGACGGCAGTGGG
TGTTGTACTGGCTACACGTTGTTTCGATATGGATTCATATTTTCGAGGGT
GTGTTCTGCAGGGTAAGGGTATGTTCTGTAGGGTATTTGAATTGTCACAG
AGTCACAGACATTCTCTGTAGGGTATTGCGGTGTCCACAGAACTCACAGA
AGTTCGGCGGTATTGTGCTGGCCTGTCACAGAAGTTTTCTGTAGGGTATT
TGGAAAGTTACAGATCCTACAGAGATTCTCTGTAAGGTATTGAGGTGTCC
ACAGAAGTCGCAGAGATTCTCTGTAGGGTATTGATGTGTCCACAGAACTC
ACAGAGATTCTCTGTAGGGTTTCGAGGTGTCCACAGAACTCACAAAGATT
CTCTGTAGGGTATTGAGGTGTCCACAGAACTTTCTGTACGGTATTCAAAG
CGCACAGAGCCACAGAAGTTCTCTATAGGGTATCGAGGTGTCCACAGAAC
TCACAGAGATTCTCTGTAGGGTATTGATGTTTCACAGAGGGTAACGACCC
CGGGTACTCCCCTTGATACATACCTACCCGCATGACCACATATCGCACTG
ACGGTGCCCCCTTTAGCGCTGTGCTCGACACAGCACAACAGCACACATCA
TCAGCAGCAGCACCACCACCAGGGCATAACACACAGAACCAGCAACACAG
CACCAGCGAACTGCTGGAATCGGCAGCAGGGTCAGCGCTGCCGGGATCGG
CAGCAGAGTCAGCACTCAGTTCTCTCTGTAGCTTCGCACAGAAGCACAGA
GCCCTTTCTCAACAGATGTGGTTTTACGGCTCGGGCGAGCGTCTGTATGT
ATGAAAATCCCACAGCAGTACCTGTACCTTCAAATCACTTTGTAGTTTCG
TTCGTGGGCCTGACGTCAGCCACAACCTGGCGGGGTATTCCACAGATGTT
TACCCGTACCTCGCGTATTGTTCCACCGCAGTGCACACAAAAGCTCTGTC
TGTAGGGTATTGGAATTGTCACAAACCTCACAGAAGTTCTCTGTAGGGTA
TGGACGCGTCACAGAACTCACAGAAGTTCTCTGTCGGGTATGGACGTGTC
ACAGAACTCACAGAAGTTCTCTGTAGGGTATTGAGGTGTCCACAGAACTC
ACAGACGTTCGGGGGTATTGTGCAGGCCTGTCACAGAAGTTTTCTGTAGG
GTATTTGGAAAGTTACAGATCCTACAGAGATTCTCTGTAGGGTATTGAGG
TGTCCACAGAAGTCACAGAGATTCTCTGTAGGGTATTGAGGTGTCCACAG
AACTCGCAGAAATTCTCTGTAGGGTATTTACAGAGGGTACCTACCGCCGG
TCGGTTCTGTGCGTACCCTACAGAATACACCCTTTGCATATTTTGGCGGC
ACAACTGTCAGTTGGTGTTGCTCTTGAGCAAAGCATCAGTGAGTAGAATC
TGGACTTAGGTTCGGGTGAGGCTGCTCTGGAGACGTGCCGTCCGGGCGAA
ACTAGCGTCGTTTTGGAAATGGATTCGAGAAGGCCGAAACGTGACTTGTA
GCCCCGACTTGGGCTCTAGTCGGTGCGCTCAGCAAGCGCACCGACAAATC
CACGCGGTGTACTCGCAGCGTACCTGGTATGGTTTTACTGGGTCAACACC
GTTTCCTGCCTGGCGAGCCAAACACGATTTCCTCCTTGTCGGCAGATGGC
GCTGTATCCATCATGTTCCTCATTGAGTAGCACGCCCAGAAGGCTGAGCG
CAGACGTACGCATGGTGGCACCCCTTTCCGGCCGCTATCACACCGTAATT
TTTTCGAACATGCGTAACCGACTCTCGCTCTTCGAAGGCGGGTCAGGTTC
TGCCTCCACTGTTGTGTCTGTAGAGCTACCGCTCTGACAGCTTTCTGTTT
TCCCGTCCCGCTATCGAGAGAGAAACGTGTCAGTGTCGTCAATTCCCACG
CGCCACCTCTGGAAGTGCTGCTCGCCATTTAGCTTCGTCAGCTACACAAA
CAGATGGGAGGAAGGTGTTCGTTGTTTCTAACGGCGATGACAAGGAGGTG
GCAGCGCCGTTCTCACGAAGCAAAGATTTTGGTTGAAGAGCGCCATCGAT
CGCGCAAGAACAGCATTGATGCCCCTATCCTTATCATCACCGCAAAGTCC
CAAATCTGTCCGTGTAAAAAAGTTTAATATCTTCTGAAACTCCCTTGACA
TGAACTGGTTCTAGTTTGGATTATTCCCACGCCGAATTAATAGTCCACTC
TGAATTTGGTCAAAGTGGTGGTTAATGTGCTCAGATATCATATATCCCAT
CCCCCCCCCCCCCTCCCCTTTCCCGCTCTCGCTGTTTCGTTCTCAATATT
GCTTCAGGGATACGCGCTGACGTGCTGTTCGTTCGCCAGGTCAGACGTGA
CCATTCGATCTGTTGAGGAGGACGAGCTTGTGGGCGCCCAGTTCAGCGAT
CGACAGTAGTGATCGATGCCATATCGTTTTTTCCCTACAGCAGCAGCAGT
AGCCTTAGAATAAGGTAAAGGATTACAGGCAACGCTTGGAGGAGAGCGGG
GCTTTTGAGGTCTTGGTAGACGAGCCGCAACCCATCGGTAACTTTTACCC
TCTTGAGTACTCGTACGCACTTTTAGCGTATAACACGCATACCCTTCCTT
GGTCGAAAACGGATCGTCGCTCGTGTTCCCGCCAGAGGCACTTGGAACTC
GTGAGTTTGTTTTTCTCGAAGGGGTTCTGGGGAGGGGTTGGTAAGGCGGT
GAAATGCGGTCCTCGCGTGTGCCTTGTCTCGTGTGACAGAATGACACACC
CAGAGAGAGGGGAGTCAGTGTTCCTCACGCGGCGTGCGTGCGGACTCTAA
ACCCTTGTGTGCTGAAACGGAAGGCCCGGCGCTTACTTTCGTGGAATCTT
TCACGTCAACAGATATGTTTACCACAGAAGTGGGGTCATGGGACAACATA
AACCAGCTCGGCGGACAATCAAGACCCATTCAGCACAATGGTACTTGTAG
GCATTTGTTGTTCCTGATGTCGGGGCAAGCGTAGATAGAGTTGTCCCATC
GTTGGTTCGTTTCTTGTATCCTGTTCTGTTCCGTTTTTTCGTATTTGTTT
GTTTTTGAAAATGAAAAAACAGTATGTTGTGGTACTTGTGCGTGGTGTCC
AGGGCCGCGCTTGTCGATTGGTTTATCATCGCTGATGATCCTGTCAAATT
CTTCGGCGCCGACTCCCTTAAGCAAGCCGAAACGCAAACGCCGTGTATGA
TCTAGAACTGGTTTTGGAGCAGCCGCGCTGAACTAGAGCGGAATTTTTCC
CCGGACGATGTCTCGAGTAAAGCATATTAGCCTGGGCAACTATGTACGAG
CAGCACGGTTCACACCGCCACTGACTGCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1285:7079..16207-

>mRNA_P-littoralis_Contig1285.1.2 ID=mRNA_P-littoralis_Contig1285.1.2|Name=mRNA_P-littoralis_Contig1285.1.2|organism=Pylaiella littoralis U1_48|type=CDS|length=507bp|location=Sequence derived from alignment at P-littoralis_Contig1285:7079..16207- (Pylaiella littoralis U1_48)
ATGAGGGGTGTTGACGCGTGGACAACGGGATTAGCTGTGCTGGCTCTGAT
GGGCGTCACTCAAGGTTTTGTTCCGTACGGGGCCCCCGCCGTCCGATCGG
CCTCCCGAAGCTGGGGTAGCAGCAGCAGCAGCGCGAACACCAAGCGGGCG
AGAGCAACAATAAAAGTACCCGCCCGGCGAGCTGTATCAGGCATGCAGAT
GCACCAGGTTACCATTGAGCACGAGGGCAAGTCGACCGTGCTGGAGGTGG
ACGACAACACGTCTATCCTAGATGCGGCGCTGGACAACGATATCGAGCTC
CCGCACGACTGTAAGCTCGGCGTGTGCCTGACGTGCCCCTCCATCGTCGT
GAGCGGGGAGATAGACCAGAGCGACGGGACCCTTGAGGACAGCGTAACGG
CGCAGGGATACGCGCTGACGTGCTGTTCGTTCGCCAGGTCAGACGTGACC
ATTCGATCTGTTGAGGAGGACGAGCTTGTGGGCGCCCAGTTCAGCGATCG
ACAGTAG
back to top