mRNA_P-littoralis_Contig1283.5.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1283.5.1
Unique NamemRNA_P-littoralis_Contig1283.5.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1283.5.1 vs. uniprot
Match: A0A6H5KQZ5_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ5_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 2.750e-29
Identity = 63/122 (51.64%), Postives = 72/122 (59.02%), Query Frame = 1 
Query:   16 DLTVAELEELSAGLARMIKTERVDWDTRLACILMAKCGVGHKNKGGRRTYKEVPLYDSNGAKSVKVCRGGTCVKGDDPTARYKSKRTRGVCWCSICSNGLGKIRAVHLCKQCRASTQGHVAA 381
            DLTVAEL E    L + +K ERVDWD RLA  LM+ C VGH   G RR  K    Y  NGA S +VC G  C     P + Y   RTRG CWC IC+NGLGK RA+ LC +C    + HVAA
Sbjct:  356 DLTVAELREFQTLLKKAMKMERVDWDRRLANHLMSLCNVGHTENGARRATKPSESYLVNGACSSRVCHGRGCKT--PPGSPYAGTRTRGACWCDICTNGLGKDRALILCTKCHKVPEAHVAA 475
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BLAST of mRNA_P-littoralis_Contig1283.5.1 vs. uniprot
Match: A0A6H5KC21_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC21_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 3.460e-29
Identity = 62/121 (51.24%), Postives = 70/121 (57.85%), Query Frame = 1 
Query:   19 LTVAELEELSAGLARMIKTERVDWDTRLACILMAKCGVGHKNKGGRRTYKEVPLYDSNGAKSVKVCRGGTCVKGDDPTARYKSKRTRGVCWCSICSNGLGKIRAVHLCKQCRASTQGHVAA 381
            LTVAEL E  + L + +K ERVDWD RLA  LM+ C VGH   G RR  K V  Y    AKS  VC GG C K     +RY   RTRGVCWC  C++GLGK RA+ LC  C      HV A
Sbjct:  128 LTVAELREFQS-LKKAMKVERVDWDRRLANHLMSLCSVGHTETGARRATKAVETYSVKDAKSSLVCYGGICEK-TAKASRYTGSRTRGVCWCDACTDGLGKDRALILCTMCHRVPAAHVTA 246
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BLAST of mRNA_P-littoralis_Contig1283.5.1 vs. uniprot
Match: A0A6H5JDZ7_9PHAE (DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDZ7_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 1.140e-23
Identity = 57/122 (46.72%), Postives = 69/122 (56.56%), Query Frame = 1 
Query:   16 DLTVAELEELSAGLARMIKTERVDWDTRLACILMAKCGVGHKNKGGRRTYKEVPLYDSNGAKSVKVCRGGTCVKGDDPTARYKSKRTRGVCWCSICSNGLGKIRAVHLCKQCRASTQGHVAA 381
            DLTVAEL E  + + + +K ERVDWD RLA  LM+ C V H      RT K V  Y   GAKS  VC GG C +     +R    RTR VCWC  C++GLGK RA+ LC +C      +V A
Sbjct:  473 DLTVAELREFQSLVKKAMKVERVDWDRRLANHLMSLCSVCHTETRASRTTKPVETYSVKGAKSSLVCYGGICEE-TAKASRCTGSRTRVVCWCDTCTDGLGKDRALILCTKCNKVPAANVTA 593
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1283.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KQZ5_9PHAE2.750e-2951.64DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5KC21_9PHAE3.460e-2951.24DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JDZ7_9PHAE1.140e-2346.72DDE_Tnp_1_7 domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1283contigP-littoralis_Contig1283:24411..24812 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size403
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789572.6609087-CDS-P-littoralis_Contig1283:24410..248121680789572.6609087-CDS-P-littoralis_Contig1283:24410..24812Pylaiella littoralis U1_48CDSP-littoralis_Contig1283 24411..24812 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1283.5.1prot_P-littoralis_Contig1283.5.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1283 24411..24812 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1283.5.1

>prot_P-littoralis_Contig1283.5.1 ID=prot_P-littoralis_Contig1283.5.1|Name=mRNA_P-littoralis_Contig1283.5.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
MGGGGDLTVAELEELSAGLARMIKTERVDWDTRLACILMAKCGVGHKNKG
GRRTYKEVPLYDSNGAKSVKVCRGGTCVKGDDPTARYKSKRTRGVCWCSI
CSNGLGKIRAVHLCKQCRASTQGHVAAALEADRH
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mRNA from alignment at P-littoralis_Contig1283:24411..24812-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1283.5.1 ID=mRNA_P-littoralis_Contig1283.5.1|Name=mRNA_P-littoralis_Contig1283.5.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig1283:24411..24812- (Pylaiella littoralis U1_48)
ATGGGGGGTGGGGGTGACCTTACCGTGGCAGAGCTTGAGGAACTCAGTGC
TGGGTTGGCAAGAATGATCAAGACAGAGCGCGTAGACTGGGACACCAGAC
TGGCATGCATCCTCATGGCCAAGTGCGGTGTCGGCCATAAGAACAAGGGG
GGGAGGCGTACGTATAAGGAGGTCCCTTTGTATGACAGCAACGGCGCAAA
ATCGGTGAAGGTGTGTAGGGGAGGGACGTGCGTGAAGGGTGACGACCCCA
CAGCCCGCTACAAATCGAAGAGGACACGTGGGGTTTGTTGGTGCAGTATC
TGTAGTAACGGACTAGGGAAGATAAGGGCCGTCCACCTCTGCAAGCAGTG
CCGCGCGTCCACACAAGGGCACGTGGCAGCCGCACTGGAGGCCGACCGTC
AT
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Coding sequence (CDS) from alignment at P-littoralis_Contig1283:24411..24812-

>mRNA_P-littoralis_Contig1283.5.1 ID=mRNA_P-littoralis_Contig1283.5.1|Name=mRNA_P-littoralis_Contig1283.5.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig1283:24411..24812- (Pylaiella littoralis U1_48)
ATGGGGGGTGGGGGTGACCTTACCGTGGCAGAGCTTGAGGAACTCAGTGC
TGGGTTGGCAAGAATGATCAAGACAGAGCGCGTAGACTGGGACACCAGAC
TGGCATGCATCCTCATGGCCAAGTGCGGTGTCGGCCATAAGAACAAGGGG
GGGAGGCGTACGTATAAGGAGGTCCCTTTGTATGACAGCAACGGCGCAAA
ATCGGTGAAGGTGTGTAGGGGAGGGACGTGCGTGAAGGGTGACGACCCCA
CAGCCCGCTACAAATCGAAGAGGACACGTGGGGTTTGTTGGTGCAGTATC
TGTAGTAACGGACTAGGGAAGATAAGGGCCGTCCACCTCTGCAAGCAGTG
CCGCGCGTCCACACAAGGGCACGTGGCAGCCGCACTGGAGGCCGACCGTC
AT
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