mRNA_P-littoralis_Contig1282.16.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE) HSP 1 Score: 171 bits (434), Expect = 7.390e-46 Identity = 87/134 (64.93%), Postives = 101/134 (75.37%), Query Frame = 2
Query: 449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
+D +G R+EAE LVSKCLLQ +GG G+RVHDLVLEFV + I+A+ E+ E+A LQAQYL R DV++ Y +PEHGAG QGLFFLDALWRSVEKLSGD +LEV SYR SL E ESC AT A Y V L IQ
Sbjct: 301 EDAEGTREEAEGLVSKCLLQAVGGSGYRVHDLVLEFVKTSIRAEEEMVEKATALQAQYLGRVDVLKSYGDPEHGAGNQGLFFLDALWRSVEKLSGDPELEVASYRASLGELESCEATEDVASSYRWVGFLFNIQ 434
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI) HSP 1 Score: 172 bits (435), Expect = 1.100e-44 Identity = 87/134 (64.93%), Postives = 101/134 (75.37%), Query Frame = 2
Query: 449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
+D +G RD+AE LVSKCLL +GGGG+RVHDLVLEF + I+A+ E ++A LQAQYL R DV+EGY +PEHGAG QGLFFLDALWRSVEKLSGD +LEV SY SL E ESC AT A+ Y SV L IQ
Sbjct: 560 EDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLEGYGDPEHGAGGQGLFFLDALWRSVEKLSGDPELEVASYHNSLGELESCEATKAVARSYWSVGFLFNIQ 693
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: A0A6H5KU94_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU94_9PHAE) HSP 1 Score: 171 bits (433), Expect = 1.980e-44 Identity = 86/135 (63.70%), Postives = 105/135 (77.78%), Query Frame = 2
Query: 446 SQDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
++DT G R++AE LVSKCLLQD+GGGG+RVHDLVL+FV +IKAD+E+A++ LQAQ+L R +V++ Y +PEHGAG QGLF LDALWRSVE+LSGD +LEV SY TSL ESC AT A YSSV L IQ
Sbjct: 436 TEDTGGTREDAEGLVSKCLLQDVGGGGYRVHDLVLDFVKIKIKADMEMAKKIAALQAQFLGRLNVLKSYEHPEHGAGNQGLFVLDALWRSVEQLSGDPKLEVPSYSTSLAALESCEATTVVASSYSSVGFLFSIQ 570
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI) HSP 1 Score: 171 bits (432), Expect = 2.870e-44 Identity = 86/134 (64.18%), Postives = 99/134 (73.88%), Query Frame = 2
Query: 449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
+D +G RD+AE LVSKCLL +GGGG+RVHDLVLEF + I+A+ E ++A LQAQYL R DV+E Y +PEHG G+QGLFFLDALWRSVEKLSGD LEV SYR SL E ESC AT A Y SV L IQ
Sbjct: 543 EDAEGTRDDAEGLVSKCLLHAVGGGGYRVHDLVLEFAKTSIRAEEETVKKATALQAQYLGRLDVLESYGDPEHGTGDQGLFFLDALWRSVEKLSGDPGLEVASYRASLEELESCEATEAVATSYGSVGFLFNIQ 676
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI) HSP 1 Score: 171 bits (432), Expect = 3.010e-44 Identity = 83/134 (61.94%), Postives = 103/134 (76.87%), Query Frame = 2
Query: 449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
+D +G RDEAE LV+KCLL +G GG+RVHD+VLEF + I+AD E E+A LQAQ+L R DV++ YR+PEHGAG++GLFFLD+LWRSVEKLSGD +LEV +YR SLRE ESC AT A YS+V L + Q
Sbjct: 518 EDAEGTRDEAEGLVNKCLLHAVGDGGYRVHDMVLEFAKTSIRADEETVEKATALQAQFLGRLDVLKSYRDPEHGAGDRGLFFLDSLWRSVEKLSGDPELEVTTYRASLRELESCKATEDMASSYSAVGFLFDAQ 651
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE) HSP 1 Score: 154 bits (388), Expect = 1.020e-38 Identity = 79/134 (58.96%), Postives = 94/134 (70.15%), Query Frame = 2
Query: 449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
+D +G RDEAE LVSKCLL +GGGG+RVHDLVLE+ +RI+AD E+ + LQA +L R DV++ YR+PEHGAG Q LFFLDALWRSVEKLSGD +LEV ESC AT A+ Y SV L IQ
Sbjct: 535 EDAEGTRDEAEGLVSKCLLHAVGGGGYRVHDLVLEYAKTRIRADAEMVRKVTALQAHFLGRLDVLKSYRDPEHGAGNQSLFFLDALWRSVEKLSGDPELEVAL--------ESCEATEAVARSYWSVGFLFNIQ 660
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: D7FUD7_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD7_ECTSI) HSP 1 Score: 154 bits (389), Expect = 1.530e-38 Identity = 80/134 (59.70%), Postives = 95/134 (70.90%), Query Frame = 2
Query: 449 QDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
+D +G EAE LVSK LL +GGGG+R+HDLVL+F + I+A+ E + A LQAQYL R DVVE Y +PEHGAG+QG+FFLDALWRSVEKLSGD QLEV SYR SL E AT A+ Y SV L +Q
Sbjct: 344 EDAEGTHAEAEGLVSKYLLHAVGGGGYRMHDLVLDFAKTSIRAEEETVKRATALQAQYLGRLDVVESYGDPEHGAGDQGIFFLDALWRSVEKLSGDPQLEVASYRASLGALEWGEATEAAARSYFSVGFLFNVQ 477
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: A0A6H5KFQ0_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFQ0_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.410e-26 Identity = 64/99 (64.65%), Postives = 76/99 (76.77%), Query Frame = 3
Query: 3 VIELCGRLPLVLAIAGSMPVVKGKGLTADAWKQLTKDLENVAKKMRISGEQLTSLSVVLETSFVALAQERQEELLKMAVLAAGAVAPIEMLRNLWQTEV 299
V+ CGR PL L +A SMP+VKGKGLTA AW +L K+LENVAKKMR GEQ TSL +V+ETSF AL ++EE M+V+AAGAVAPIEML NLW +V
Sbjct: 322 VVTRCGRPPLGLGMAVSMPIVKGKGLTAGAWTKLFKELENVAKKMRARGEQSTSLKLVIETSFDALLARKREE---MSVMAAGAVAPIEMLLNLWGIQV 417
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: A0A6H5JY23_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY23_9PHAE) HSP 1 Score: 106 bits (265), Expect = 3.170e-25 Identity = 55/88 (62.50%), Postives = 61/88 (69.32%), Query Frame = 2
Query: 587 VAEEAIMLQAQYLARADVVEGYRNPEHGAGEQGLFFLDALWRSVEKLSGDSQLEVRSYRTSLRESESCGATFHTAKFYSSVARLLEIQ 850
+ E+A LQA +L DV++ Y NPEHGA QGLF LDALWRSVEKLSGDS+LEV SY TSL E ESC AT A YS V L IQ
Sbjct: 1 MVEKATTLQAHFLGTLDVLKDYENPEHGADNQGLFVLDALWRSVEKLSGDSELEVASYSTSLGELESCKATTDVASSYSFVGFLFNIQ 88
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Match: D8LPV9_ECTSI (NB-ARC and TPR repeat-containig protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPV9_ECTSI) HSP 1 Score: 115 bits (288), Expect = 3.620e-25 Identity = 60/98 (61.22%), Postives = 74/98 (75.51%), Query Frame = 3
Query: 3 VIELCGRLPLVLAIAGSMPVVKGKGLTADAWKQLTKDLENVAKKMRISGEQLTSLSVVLETSFVALAQERQEELLKMAVLAAGAVAPIEMLRNLWQTE 296
V++ CGRLPLVLAIAGSMPVVKGKGL AW++L ++ ENV M GE+ +L +VL SF ALA ++EE L+MAVLA GAVAP EMLRNLW+ +
Sbjct: 440 VVDRCGRLPLVLAIAGSMPVVKGKGLKDGAWEELIEEFENVTTIMWEPGEESRNLDMVLGASFNALAARKREEFLRMAVLAPGAVAPFEMLRNLWEIQ 537 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1282.16.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1282.16.1 >prot_P-littoralis_Contig1282.16.1 ID=prot_P-littoralis_Contig1282.16.1|Name=mRNA_P-littoralis_Contig1282.16.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp MVSQDTQGARDEAECLVSKCLLQDMGGGGHRVHDLVLEFVTSRIKADVEVback to top mRNA from alignment at P-littoralis_Contig1282:27273..28134+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1282.16.1 ID=mRNA_P-littoralis_Contig1282.16.1|Name=mRNA_P-littoralis_Contig1282.16.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=862bp|location=Sequence derived from alignment at P-littoralis_Contig1282:27273..28134+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1282:27273..28134+ >mRNA_P-littoralis_Contig1282.16.1 ID=mRNA_P-littoralis_Contig1282.16.1|Name=mRNA_P-littoralis_Contig1282.16.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig1282:27273..28134+ (Pylaiella littoralis U1_48)back to top |